Wall clock time and date at job start Tue Mar 31 2020 06:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42900 * 109.46905 * 2 1 4 4 C 1.42899 * 114.00028 * 180.02562 * 3 2 1 5 5 H 1.08998 * 112.84847 * 339.66709 * 4 3 2 6 6 C 1.53781 * 113.61519 * 110.85896 * 4 3 2 7 7 C 1.54052 * 86.98363 * 89.16401 * 6 4 3 8 8 N 1.46506 * 113.61197 * 270.88072 * 7 6 4 9 9 C 1.34771 * 120.00148 * 283.98740 * 8 7 6 10 10 O 1.21681 * 120.00171 * 4.08635 * 9 8 7 11 11 C 1.46375 * 119.99760 * 184.09210 * 9 8 7 12 12 H 1.08001 * 120.00101 * 359.97438 * 11 9 8 13 13 C 1.40051 * 120.00226 * 179.97438 * 11 9 8 14 14 N 1.30674 * 119.99637 * 359.97438 * 13 11 9 15 15 Si 1.86792 * 120.00419 * 179.97438 * 13 11 9 16 16 H 1.48509 * 109.46891 * 90.00115 * 15 13 11 17 17 H 1.48496 * 109.47484 * 209.99986 * 15 13 11 18 18 H 1.48505 * 109.47355 * 330.00485 * 15 13 11 19 19 C 1.50703 * 113.61918 * 139.98236 * 7 6 4 20 20 O 1.20827 * 119.99633 * 293.89159 * 19 7 6 21 21 O 1.34230 * 120.00090 * 113.90013 * 19 7 6 22 22 C 1.53774 * 87.07760 * 25.42850 * 7 6 4 23 23 C 1.53002 * 113.61712 * 220.01956 * 22 7 6 24 24 C 1.53008 * 113.68773 * 89.13215 * 22 7 6 25 25 H 1.08998 * 109.47444 * 60.00285 * 1 2 3 26 26 H 1.09004 * 109.47160 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46861 * 299.99879 * 1 2 3 28 28 H 1.08997 * 109.47066 * 239.99929 * 2 1 3 29 29 H 1.08998 * 109.47444 * 119.99715 * 2 1 3 30 30 H 1.09001 * 113.61330 * 203.66409 * 6 4 3 31 31 H 1.09002 * 113.61665 * 334.57206 * 6 4 3 32 32 H 0.96999 * 119.99498 * 103.98412 * 8 7 6 33 33 H 0.97001 * 119.99834 * 179.97438 * 14 13 11 34 34 H 0.96698 * 116.99373 * 179.97438 * 21 19 7 35 35 H 1.08995 * 109.47219 * 177.00443 * 23 22 7 36 36 H 1.08998 * 109.47404 * 297.00951 * 23 22 7 37 37 H 1.08997 * 109.46819 * 57.00383 * 23 22 7 38 38 H 1.09002 * 109.47073 * 302.96102 * 24 22 7 39 39 H 1.09004 * 109.46969 * 62.95864 * 24 22 7 40 40 H 1.08999 * 109.46919 * 182.95769 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.9273 0.5546 0.3481 6 6 4.0047 2.0092 -1.3174 7 6 3.8404 3.4146 -0.7084 8 7 2.5304 4.0172 -0.9680 9 6 2.2512 4.5244 -2.1850 10 8 3.0582 4.4158 -3.0892 11 6 0.9772 5.2060 -2.4191 12 1 0.2608 5.3021 -1.6166 13 6 0.6872 5.7336 -3.6836 14 7 1.5542 5.6178 -4.6543 15 14 -0.9389 6.6028 -3.9825 16 1 -0.7880 8.0504 -3.6873 17 1 -1.3412 6.4263 -5.4010 18 1 -1.9804 6.0231 -3.0967 19 6 4.9853 4.3444 -1.0179 20 8 6.0847 4.1187 -0.5703 21 8 4.7837 5.4234 -1.7905 22 6 3.9473 2.7435 0.6710 23 6 2.9846 3.3216 1.7102 24 6 5.3823 2.6291 1.1894 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 5.0432 1.7278 -1.4920 31 1 3.3651 1.8286 -2.1814 32 1 1.8641 4.0509 -0.2639 33 1 1.3532 5.9829 -5.5302 34 1 5.5483 5.9904 -1.9608 35 1 3.0789 2.7647 2.6423 36 1 3.2270 4.3695 1.8868 37 1 1.9619 3.2425 1.3416 38 1 5.9868 2.0801 0.4673 39 1 5.7991 3.6267 1.3282 40 1 5.3833 2.0991 2.1418 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605603811.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:50 Heat of formation + Delta-G solvation = -166.513502 kcal Electronic energy + Delta-G solvation = -24758.521261 eV Core-core repulsion = 21152.770249 eV Total energy + Delta-G solvation = -3605.751012 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.49269 -40.15326 -38.75517 -37.61838 -36.68019 -34.59227 -33.47307 -32.04264 -31.36205 -28.69278 -27.96123 -26.78695 -23.96735 -23.38515 -23.10606 -21.63738 -19.60468 -19.16364 -18.89374 -17.91580 -17.34927 -17.09268 -16.87332 -16.37038 -16.22638 -15.66608 -15.18162 -14.67549 -14.59077 -14.33059 -14.03066 -13.88371 -13.64786 -13.32200 -13.24455 -13.07444 -13.02429 -12.88544 -12.73583 -12.50599 -12.32511 -12.20419 -12.13645 -12.06269 -11.97955 -11.55863 -11.35093 -10.91803 -10.77949 -10.33170 -9.62735 -9.36842 -8.18734 -6.72793 1.20840 1.41359 1.42736 1.56574 2.27193 2.31840 2.56169 2.64540 2.96419 3.31716 3.46747 3.62885 3.94548 4.06650 4.19033 4.27271 4.30033 4.40932 4.47253 4.57066 4.63432 4.69880 4.85625 4.87163 4.99175 5.00573 5.08389 5.11402 5.17955 5.32724 5.36483 5.39594 5.50826 5.72789 5.98485 6.24214 6.33501 6.42453 6.97566 7.17152 7.65405 8.63241 8.82880 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.014818 B = 0.007284 C = 0.005486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.164292 B = 3842.915821 C = 5103.125193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.050 3.950 3 O -0.372 6.372 4 C 0.097 3.903 5 H 0.113 0.887 6 C -0.155 4.155 7 C 0.165 3.835 8 N -0.720 5.720 9 C 0.554 3.446 10 O -0.595 6.595 11 C -0.572 4.572 12 H 0.077 0.923 13 C 0.034 3.966 14 N -0.818 5.818 15 Si 0.988 3.012 16 H -0.264 1.264 17 H -0.275 1.275 18 H -0.252 1.252 19 C 0.484 3.516 20 O -0.539 6.539 21 O -0.491 6.491 22 C -0.058 4.058 23 C -0.132 4.132 24 C -0.111 4.111 25 H 0.041 0.959 26 H 0.092 0.908 27 H 0.065 0.935 28 H 0.043 0.957 29 H 0.074 0.926 30 H 0.100 0.900 31 H 0.052 0.948 32 H 0.396 0.604 33 H 0.270 0.730 34 H 0.401 0.599 35 H 0.090 0.910 36 H 0.051 0.949 37 H 0.064 0.936 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.588 -9.202 13.245 16.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.026 4.026 3 O -0.291 6.291 4 C 0.038 3.962 5 H 0.131 0.869 6 C -0.194 4.194 7 C 0.074 3.926 8 N -0.376 5.376 9 C 0.357 3.643 10 O -0.479 6.479 11 C -0.609 4.609 12 H 0.095 0.905 13 C -0.180 4.180 14 N -0.448 5.448 15 Si 0.808 3.192 16 H -0.189 1.189 17 H -0.200 1.200 18 H -0.176 1.176 19 C 0.328 3.672 20 O -0.431 6.431 21 O -0.300 6.300 22 C -0.059 4.059 23 C -0.189 4.189 24 C -0.168 4.168 25 H 0.060 0.940 26 H 0.111 0.889 27 H 0.084 0.916 28 H 0.061 0.939 29 H 0.092 0.908 30 H 0.118 0.882 31 H 0.071 0.929 32 H 0.233 0.767 33 H 0.080 0.920 34 H 0.258 0.742 35 H 0.108 0.892 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.022 -9.377 12.590 15.731 hybrid contribution -0.066 0.923 -0.798 1.222 sum 0.956 -8.454 11.792 14.541 Atomic orbital electron populations 1.21741 0.93306 1.03164 1.02340 1.22729 0.96076 0.82951 1.00819 1.87954 1.19181 1.27782 1.94195 1.22894 0.82263 0.97928 0.93068 0.86931 1.23884 1.01878 0.94202 0.99447 1.21103 0.82719 0.89429 0.99373 1.45587 1.13112 1.64308 1.14608 1.18296 0.87603 0.77970 0.80414 1.90548 1.51055 1.62573 1.43751 1.21307 1.02599 1.39018 0.97957 0.90524 1.26766 1.01395 0.94930 0.94944 1.70187 1.35924 1.36363 1.02300 0.85170 0.77285 0.78668 0.78080 1.18922 1.19967 1.17554 1.24219 0.90050 0.79797 0.73175 1.90589 1.26773 1.74062 1.51650 1.85044 1.44510 1.36780 1.63629 1.22391 0.98797 0.93590 0.91149 1.21587 0.98664 1.00550 0.98126 1.21666 0.90894 1.03008 1.01262 0.94014 0.88907 0.91606 0.93886 0.90789 0.88205 0.92913 0.76719 0.92029 0.74157 0.89150 0.92989 0.91749 0.92316 0.92106 0.89459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.11 10.28 71.98 0.74 -2.37 16 2 C 0.05 1.13 6.50 71.98 0.47 1.59 16 3 O -0.37 -11.07 8.35 -148.98 -1.24 -12.31 16 4 C 0.10 2.72 3.79 31.12 0.12 2.84 16 5 H 0.11 2.36 7.84 -2.39 -0.02 2.34 16 6 C -0.15 -5.76 6.73 31.21 0.21 -5.55 16 7 C 0.16 6.53 0.85 3.47 0.00 6.53 16 8 N -0.72 -32.87 4.54 -427.75 -1.94 -34.81 16 9 C 0.55 31.76 6.76 86.36 0.58 32.34 16 10 O -0.60 -38.28 12.57 18.05 0.23 -38.06 16 11 C -0.57 -32.83 9.54 24.83 0.24 -32.59 16 12 H 0.08 4.04 7.85 -2.91 -0.02 4.02 16 13 C 0.03 1.94 5.50 85.30 0.47 2.41 16 14 N -0.82 -50.12 11.83 21.84 0.26 -49.86 16 15 Si 0.99 41.87 29.56 68.60 2.03 43.90 16 16 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 17 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 18 H -0.25 -10.02 7.11 99.48 0.71 -9.31 16 19 C 0.48 20.73 7.21 71.24 0.51 21.24 16 20 O -0.54 -21.72 13.53 21.96 0.30 -21.42 16 21 O -0.49 -22.88 10.12 -44.02 -0.45 -23.33 16 22 C -0.06 -1.69 1.26 -51.66 -0.07 -1.76 16 23 C -0.13 -3.36 8.25 71.98 0.59 -2.77 16 24 C -0.11 -2.83 7.41 71.98 0.53 -2.30 16 25 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 26 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 27 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 28 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.10 3.43 7.59 -2.39 -0.02 3.42 16 31 H 0.05 2.36 8.14 -2.39 -0.02 2.35 16 32 H 0.40 16.55 6.33 -92.71 -0.59 15.96 16 33 H 0.27 15.12 8.29 -92.71 -0.77 14.35 16 34 H 0.40 14.56 9.10 -74.06 -0.67 13.89 16 35 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.06 1.79 5.53 -2.39 -0.01 1.78 16 38 H 0.06 1.56 6.80 -2.39 -0.02 1.55 16 39 H 0.06 1.78 6.39 -2.39 -0.02 1.77 16 40 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -77.59 324.92 3.39 -74.19 By element: Atomic # 1 Polarization: 42.27 SS G_CDS: -0.19 Total: 42.08 kcal Atomic # 6 Polarization: 15.21 SS G_CDS: 4.41 Total: 19.62 kcal Atomic # 7 Polarization: -82.99 SS G_CDS: -1.68 Total: -84.67 kcal Atomic # 8 Polarization: -93.95 SS G_CDS: -1.17 Total: -95.12 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Total: -77.59 3.39 -74.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605603811.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.321 kcal (2) G-P(sol) polarization free energy of solvation -77.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds