Wall clock time and date at job start Tue Mar 31 2020 06:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42898 * 109.46816 * 2 1 4 4 C 1.42904 * 113.99675 * 184.28903 * 3 2 1 5 5 C 1.53000 * 109.47118 * 178.62182 * 4 3 2 6 6 C 1.50700 * 115.55160 * 303.49030 * 5 4 3 7 7 O 1.21289 * 120.00389 * 110.99557 * 6 5 4 8 8 N 1.34774 * 119.99748 * 290.72341 * 6 5 4 9 9 C 1.37104 * 120.00247 * 355.18011 * 8 6 5 10 10 H 1.08007 * 119.99715 * 324.05070 * 9 8 6 11 11 C 1.38944 * 119.99949 * 144.04899 * 9 8 6 12 12 N 1.31409 * 120.00224 * 339.23232 * 11 9 8 13 13 Si 1.86807 * 120.00024 * 159.23528 * 11 9 8 14 14 H 1.48502 * 109.46675 * 5.00749 * 13 11 9 15 15 H 1.48502 * 109.46966 * 125.00767 * 13 11 9 16 16 H 1.48495 * 109.47023 * 245.00824 * 13 11 9 17 17 C 1.46505 * 120.00017 * 175.18275 * 8 6 5 18 18 C 1.52993 * 109.47085 * 88.13022 * 17 8 6 19 19 C 1.50703 * 109.47337 * 180.02562 * 18 17 8 20 20 O 1.20826 * 119.99411 * 359.97438 * 19 18 17 21 21 O 1.34225 * 120.00090 * 179.97438 * 19 18 17 22 22 C 1.52999 * 117.49446 * 89.15675 * 5 4 3 23 23 C 1.53002 * 117.49823 * 157.81811 * 5 4 3 24 24 H 1.08995 * 109.47711 * 304.83288 * 1 2 3 25 25 H 1.09003 * 109.47124 * 64.83754 * 1 2 3 26 26 H 1.09006 * 109.47218 * 184.83516 * 1 2 3 27 27 H 1.08992 * 109.47292 * 239.99280 * 2 1 3 28 28 H 1.09003 * 109.46828 * 119.99654 * 2 1 3 29 29 H 1.09007 * 109.47024 * 58.62947 * 4 3 2 30 30 H 1.08990 * 109.47277 * 298.62853 * 4 3 2 31 31 H 0.97007 * 120.00447 * 179.97438 * 12 11 9 32 32 H 1.09007 * 109.47167 * 208.12654 * 17 8 6 33 33 H 1.08993 * 109.46693 * 328.12854 * 17 8 6 34 34 H 1.09007 * 109.47560 * 299.99828 * 18 17 8 35 35 H 1.09002 * 109.47738 * 60.00184 * 18 17 8 36 36 H 0.96706 * 116.99708 * 180.02562 * 21 19 18 37 37 H 1.09005 * 117.49443 * 215.00117 * 22 5 4 38 38 H 1.08996 * 117.50546 * 0.02562 * 22 5 4 39 39 H 1.08996 * 117.49795 * 359.97248 * 23 5 4 40 40 H 1.09000 * 117.49943 * 144.97558 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4274 1.4613 -0.0976 5 6 3.8198 2.9399 -0.1232 6 6 3.1854 3.7620 -1.2154 7 8 2.3615 4.6075 -0.9373 8 7 3.5376 3.5614 -2.5007 9 6 4.5428 2.6806 -2.8067 10 1 5.3981 2.5893 -2.1535 11 6 4.4610 1.9055 -3.9569 12 7 3.2956 1.6967 -4.5270 13 14 6.0077 1.1601 -4.6928 14 1 7.1635 1.4398 -3.8033 15 1 5.8326 -0.3082 -4.8302 16 1 6.2566 1.7561 -6.0300 17 6 2.8465 4.2847 -3.5711 18 6 3.5437 5.6248 -3.8137 19 6 2.8324 6.3691 -4.9143 20 8 1.8672 5.8777 -5.4499 21 8 3.2712 7.5777 -5.2995 22 6 4.0748 3.6264 1.2201 23 6 5.2478 3.2991 0.2925 24 1 -0.3634 0.5869 0.8435 25 1 -0.3633 0.4370 -0.9302 26 1 -0.3634 -1.0241 0.0866 27 1 1.8933 -0.5139 -0.8898 28 1 1.8933 -0.5138 0.8901 29 1 3.7685 0.9791 -1.0138 30 1 3.8906 0.9772 0.7620 31 1 3.2385 1.1558 -5.3303 32 1 2.8713 3.6915 -4.4852 33 1 1.8110 4.4612 -3.2803 34 1 3.5190 6.2181 -2.8996 35 1 4.5793 5.4483 -4.1044 36 1 2.7822 8.0166 -6.0091 37 1 3.7838 4.6727 1.3139 38 1 3.9635 3.0246 2.1221 39 1 5.9075 2.4822 0.5847 40 1 5.7285 4.1298 -0.2242 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605623902.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:41 Heat of formation + Delta-G solvation = -147.519160 kcal Electronic energy + Delta-G solvation = -23860.018043 eV Core-core repulsion = 20255.090687 eV Total energy + Delta-G solvation = -3604.927356 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.82282 -39.17422 -37.27371 -35.96081 -35.58479 -34.74817 -31.91560 -30.89862 -30.48257 -26.44600 -25.20215 -24.35221 -22.39162 -21.87109 -21.62275 -20.12545 -18.74707 -17.72952 -16.90916 -16.27941 -15.91110 -15.64900 -15.49266 -15.25619 -14.86882 -14.37235 -14.28300 -13.49001 -13.34829 -12.91518 -12.76685 -12.60073 -12.37287 -12.17434 -11.72359 -11.49583 -11.29279 -11.13198 -11.11557 -11.04550 -11.00527 -10.76511 -10.64717 -10.40286 -10.11530 -10.03966 -9.86250 -9.53509 -9.15809 -8.92440 -8.39801 -7.57946 -6.38418 -4.09531 2.70144 3.06174 3.18610 3.20695 3.44803 3.77343 4.02760 4.08811 4.54311 4.75206 4.93827 5.29819 5.41470 5.48144 5.58779 5.62209 5.63206 5.75889 5.82921 5.86827 6.03365 6.04505 6.07415 6.11007 6.26631 6.35903 6.38439 6.46432 6.52459 6.57884 6.63779 6.85216 6.94013 7.33069 7.48661 7.81697 7.87307 8.32372 8.36716 9.05447 9.49799 9.92308 10.62139 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.011985 B = 0.006791 C = 0.005841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2335.761153 B = 4121.904597 C = 4792.913086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.060 3.940 3 O -0.376 6.376 4 C 0.111 3.889 5 C -0.112 4.112 6 C 0.516 3.484 7 O -0.594 6.594 8 N -0.435 5.435 9 C -0.338 4.338 10 H 0.095 0.905 11 C 0.042 3.958 12 N -0.851 5.851 13 Si 0.907 3.093 14 H -0.266 1.266 15 H -0.282 1.282 16 H -0.279 1.279 17 C 0.127 3.873 18 C -0.124 4.124 19 C 0.483 3.517 20 O -0.514 6.514 21 O -0.525 6.525 22 C -0.158 4.158 23 C -0.154 4.154 24 H 0.059 0.941 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.048 0.952 28 H 0.038 0.962 29 H 0.076 0.924 30 H 0.038 0.962 31 H 0.270 0.730 32 H 0.118 0.882 33 H 0.062 0.938 34 H 0.097 0.903 35 H 0.104 0.896 36 H 0.400 0.600 37 H 0.097 0.903 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.213 0.201 4.143 5.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.017 4.017 3 O -0.296 6.296 4 C 0.035 3.965 5 C -0.115 4.115 6 C 0.305 3.695 7 O -0.479 6.479 8 N -0.153 5.153 9 C -0.466 4.466 10 H 0.112 0.888 11 C -0.164 4.164 12 N -0.487 5.487 13 Si 0.733 3.267 14 H -0.191 1.191 15 H -0.208 1.208 16 H -0.205 1.205 17 C 0.003 3.997 18 C -0.163 4.163 19 C 0.325 3.675 20 O -0.402 6.402 21 O -0.337 6.337 22 C -0.195 4.195 23 C -0.191 4.191 24 H 0.078 0.922 25 H 0.082 0.918 26 H 0.082 0.918 27 H 0.066 0.934 28 H 0.056 0.944 29 H 0.094 0.906 30 H 0.056 0.944 31 H 0.080 0.920 32 H 0.136 0.864 33 H 0.081 0.919 34 H 0.115 0.885 35 H 0.122 0.878 36 H 0.258 0.742 37 H 0.115 0.885 38 H 0.110 0.890 39 H 0.113 0.887 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.544 0.319 4.264 4.975 hybrid contribution 0.649 -0.472 -1.070 1.338 sum 3.193 -0.153 3.193 4.518 Atomic orbital electron populations 1.21701 0.94333 1.01344 1.03181 1.22336 0.95287 0.84666 0.99388 1.87964 1.21517 1.25245 1.94839 1.21811 0.81252 0.93092 1.00362 1.20942 0.99239 0.95186 0.96133 1.19236 0.82458 0.84213 0.83620 1.90522 1.36439 1.37630 1.83307 1.43313 1.32584 1.36422 1.02949 1.19504 0.99087 1.18142 1.09864 0.88759 1.25386 0.96908 0.95776 0.98365 1.69934 1.22866 1.35704 1.20201 0.86196 0.82316 0.78644 0.79526 1.19051 1.20814 1.20482 1.21198 0.94422 0.88806 0.95319 1.21874 1.01590 0.98034 0.94847 1.23820 0.82290 0.78536 0.82867 1.90701 1.27122 1.67514 1.54820 1.84595 1.60094 1.33537 1.55445 1.22967 1.01682 1.01837 0.93061 1.22920 0.90179 1.03207 1.02793 0.92162 0.91753 0.91777 0.93369 0.94424 0.90566 0.94359 0.91998 0.86412 0.91924 0.88492 0.87828 0.74200 0.88480 0.88991 0.88742 0.88416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 10.28 37.16 0.38 -1.82 16 2 C 0.06 1.00 6.66 37.16 0.25 1.25 16 3 O -0.38 -7.91 10.11 -35.23 -0.36 -8.26 16 4 C 0.11 2.18 5.65 37.16 0.21 2.39 16 5 C -0.11 -2.28 1.24 -155.66 -0.19 -2.47 16 6 C 0.52 12.64 6.63 -10.99 -0.07 12.57 16 7 O -0.59 -16.12 16.45 5.55 0.09 -16.03 16 8 N -0.44 -10.65 2.53 -114.81 -0.29 -10.94 16 9 C -0.34 -8.05 7.44 -14.93 -0.11 -8.16 16 10 H 0.09 2.13 6.43 -52.48 -0.34 1.79 16 11 C 0.04 1.02 4.97 -17.47 -0.09 0.93 16 12 N -0.85 -22.04 11.33 55.50 0.63 -21.41 16 13 Si 0.91 18.60 29.60 -169.99 -5.03 13.57 16 14 H -0.27 -5.27 7.11 56.52 0.40 -4.86 16 15 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 16 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 17 C 0.13 3.07 4.22 -4.04 -0.02 3.05 16 18 C -0.12 -2.49 6.13 -27.89 -0.17 -2.67 16 19 C 0.48 9.08 8.33 36.01 0.30 9.38 16 20 O -0.51 -11.22 16.74 -18.75 -0.31 -11.53 16 21 O -0.53 -7.69 13.42 -39.25 -0.53 -8.21 16 22 C -0.16 -2.72 9.76 -26.69 -0.26 -2.98 16 23 C -0.15 -2.54 8.74 -26.69 -0.23 -2.78 16 24 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.08 1.61 7.02 -51.92 -0.36 1.25 16 30 H 0.04 0.63 8.10 -51.93 -0.42 0.21 16 31 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 32 H 0.12 3.08 5.35 -51.93 -0.28 2.80 16 33 H 0.06 1.65 7.51 -51.93 -0.39 1.26 16 34 H 0.10 1.92 8.14 -51.92 -0.42 1.50 16 35 H 0.10 1.95 8.14 -51.93 -0.42 1.53 16 36 H 0.40 3.91 9.10 45.56 0.41 4.33 16 37 H 0.10 1.75 8.06 -51.93 -0.42 1.33 16 38 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 39 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 40 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 LS Contribution 342.87 15.07 5.17 5.17 Total: -1.00 -31.61 342.87 -5.80 -37.41 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -5.16 Total: 11.55 kcal Atomic # 6 Polarization: 8.70 SS G_CDS: -0.01 Total: 8.69 kcal Atomic # 7 Polarization: -32.69 SS G_CDS: 0.34 Total: -32.35 kcal Atomic # 8 Polarization: -42.93 SS G_CDS: -1.11 Total: -44.04 kcal Atomic # 14 Polarization: 18.60 SS G_CDS: -5.03 Total: 13.57 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.61 -5.80 -37.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605623902.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.113 kcal (2) G-P(sol) polarization free energy of solvation -31.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds