Wall clock time and date at job start Tue Mar 31 2020 06:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42898 * 109.46816 * 2 1 4 4 C 1.42904 * 113.99675 * 184.28903 * 3 2 1 5 5 C 1.53000 * 109.47118 * 178.62182 * 4 3 2 6 6 C 1.50700 * 115.55160 * 303.49030 * 5 4 3 7 7 O 1.21289 * 120.00389 * 110.99557 * 6 5 4 8 8 N 1.34774 * 119.99748 * 290.72341 * 6 5 4 9 9 C 1.37104 * 120.00247 * 355.18011 * 8 6 5 10 10 H 1.08007 * 119.99715 * 324.05070 * 9 8 6 11 11 C 1.38944 * 119.99949 * 144.04899 * 9 8 6 12 12 N 1.31409 * 120.00224 * 339.23232 * 11 9 8 13 13 Si 1.86807 * 120.00024 * 159.23528 * 11 9 8 14 14 H 1.48502 * 109.46675 * 5.00749 * 13 11 9 15 15 H 1.48502 * 109.46966 * 125.00767 * 13 11 9 16 16 H 1.48495 * 109.47023 * 245.00824 * 13 11 9 17 17 C 1.46505 * 120.00017 * 175.18275 * 8 6 5 18 18 C 1.52993 * 109.47085 * 88.13022 * 17 8 6 19 19 C 1.50703 * 109.47337 * 180.02562 * 18 17 8 20 20 O 1.20826 * 119.99411 * 359.97438 * 19 18 17 21 21 O 1.34225 * 120.00090 * 179.97438 * 19 18 17 22 22 C 1.52999 * 117.49446 * 89.15675 * 5 4 3 23 23 C 1.53002 * 117.49823 * 157.81811 * 5 4 3 24 24 H 1.08995 * 109.47711 * 304.83288 * 1 2 3 25 25 H 1.09003 * 109.47124 * 64.83754 * 1 2 3 26 26 H 1.09006 * 109.47218 * 184.83516 * 1 2 3 27 27 H 1.08992 * 109.47292 * 239.99280 * 2 1 3 28 28 H 1.09003 * 109.46828 * 119.99654 * 2 1 3 29 29 H 1.09007 * 109.47024 * 58.62947 * 4 3 2 30 30 H 1.08990 * 109.47277 * 298.62853 * 4 3 2 31 31 H 0.97007 * 120.00447 * 179.97438 * 12 11 9 32 32 H 1.09007 * 109.47167 * 208.12654 * 17 8 6 33 33 H 1.08993 * 109.46693 * 328.12854 * 17 8 6 34 34 H 1.09007 * 109.47560 * 299.99828 * 18 17 8 35 35 H 1.09002 * 109.47738 * 60.00184 * 18 17 8 36 36 H 0.96706 * 116.99708 * 180.02562 * 21 19 18 37 37 H 1.09005 * 117.49443 * 215.00117 * 22 5 4 38 38 H 1.08996 * 117.50546 * 0.02562 * 22 5 4 39 39 H 1.08996 * 117.49795 * 359.97248 * 23 5 4 40 40 H 1.09000 * 117.49943 * 144.97558 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4274 1.4613 -0.0976 5 6 3.8198 2.9399 -0.1232 6 6 3.1854 3.7620 -1.2154 7 8 2.3615 4.6075 -0.9373 8 7 3.5376 3.5614 -2.5007 9 6 4.5428 2.6806 -2.8067 10 1 5.3981 2.5893 -2.1535 11 6 4.4610 1.9055 -3.9569 12 7 3.2956 1.6967 -4.5270 13 14 6.0077 1.1601 -4.6928 14 1 7.1635 1.4398 -3.8033 15 1 5.8326 -0.3082 -4.8302 16 1 6.2566 1.7561 -6.0300 17 6 2.8465 4.2847 -3.5711 18 6 3.5437 5.6248 -3.8137 19 6 2.8324 6.3691 -4.9143 20 8 1.8672 5.8777 -5.4499 21 8 3.2712 7.5777 -5.2995 22 6 4.0748 3.6264 1.2201 23 6 5.2478 3.2991 0.2925 24 1 -0.3634 0.5869 0.8435 25 1 -0.3633 0.4370 -0.9302 26 1 -0.3634 -1.0241 0.0866 27 1 1.8933 -0.5139 -0.8898 28 1 1.8933 -0.5138 0.8901 29 1 3.7685 0.9791 -1.0138 30 1 3.8906 0.9772 0.7620 31 1 3.2385 1.1558 -5.3303 32 1 2.8713 3.6915 -4.4852 33 1 1.8110 4.4612 -3.2803 34 1 3.5190 6.2181 -2.8996 35 1 4.5793 5.4483 -4.1044 36 1 2.7822 8.0166 -6.0091 37 1 3.7838 4.6727 1.3139 38 1 3.9635 3.0246 2.1221 39 1 5.9075 2.4822 0.5847 40 1 5.7285 4.1298 -0.2242 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605623902.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:40 Heat of formation + Delta-G solvation = -169.087801 kcal Electronic energy + Delta-G solvation = -23860.953330 eV Core-core repulsion = 20255.090687 eV Total energy + Delta-G solvation = -3605.862642 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.39937 -40.82679 -38.83764 -37.46151 -37.06060 -36.61427 -33.76505 -32.31081 -32.13867 -27.91415 -27.05602 -26.09941 -23.70751 -23.21770 -23.18398 -21.76076 -20.56319 -19.23928 -18.51622 -17.90204 -17.53491 -17.21091 -16.97986 -16.83860 -16.43955 -16.12982 -15.87217 -15.12533 -15.00384 -14.37243 -14.32827 -14.15865 -13.95881 -13.46459 -13.37340 -13.12910 -12.94607 -12.77250 -12.58553 -12.51837 -12.42359 -12.30438 -12.07042 -12.01359 -11.90604 -11.68183 -11.31034 -11.01621 -10.95986 -10.42737 -10.22045 -9.50151 -8.23426 -6.00209 1.16732 1.43157 1.51673 1.63135 1.95132 2.04613 2.38370 2.60288 3.04251 3.11124 3.20603 3.90001 3.97299 4.07760 4.12505 4.16217 4.17628 4.35904 4.38364 4.48967 4.49313 4.60613 4.72896 4.79816 4.84836 4.90244 4.95194 5.04030 5.08899 5.14874 5.23268 5.31405 5.37081 5.54458 5.59745 6.00423 6.42485 6.47145 6.98222 7.18177 7.62534 8.05763 8.78723 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.011985 B = 0.006791 C = 0.005841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2335.761153 B = 4121.904597 C = 4792.913086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.053 3.947 3 O -0.413 6.413 4 C 0.116 3.884 5 C -0.150 4.150 6 C 0.502 3.498 7 O -0.635 6.635 8 N -0.443 5.443 9 C -0.339 4.339 10 H 0.111 0.889 11 C 0.000 4.000 12 N -0.893 5.893 13 Si 0.974 3.026 14 H -0.246 1.246 15 H -0.286 1.286 16 H -0.284 1.284 17 C 0.131 3.869 18 C -0.115 4.115 19 C 0.494 3.506 20 O -0.550 6.550 21 O -0.506 6.506 22 C -0.145 4.145 23 C -0.127 4.127 24 H 0.061 0.939 25 H 0.036 0.964 26 H 0.098 0.902 27 H 0.036 0.964 28 H 0.071 0.929 29 H 0.051 0.949 30 H 0.078 0.922 31 H 0.268 0.732 32 H 0.098 0.902 33 H 0.024 0.976 34 H 0.099 0.901 35 H 0.120 0.880 36 H 0.427 0.573 37 H 0.082 0.918 38 H 0.120 0.880 39 H 0.129 0.871 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.704 -0.299 5.314 7.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.023 4.023 3 O -0.334 6.334 4 C 0.040 3.960 5 C -0.153 4.153 6 C 0.292 3.708 7 O -0.523 6.523 8 N -0.159 5.159 9 C -0.466 4.466 10 H 0.128 0.872 11 C -0.203 4.203 12 N -0.530 5.530 13 Si 0.798 3.202 14 H -0.168 1.168 15 H -0.212 1.212 16 H -0.210 1.210 17 C 0.006 3.994 18 C -0.154 4.154 19 C 0.338 3.662 20 O -0.441 6.441 21 O -0.320 6.320 22 C -0.183 4.183 23 C -0.164 4.164 24 H 0.080 0.920 25 H 0.056 0.944 26 H 0.117 0.883 27 H 0.055 0.945 28 H 0.089 0.911 29 H 0.069 0.931 30 H 0.096 0.904 31 H 0.078 0.922 32 H 0.116 0.884 33 H 0.043 0.957 34 H 0.117 0.883 35 H 0.138 0.862 36 H 0.288 0.712 37 H 0.101 0.899 38 H 0.139 0.861 39 H 0.147 0.853 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 5.065 -0.155 5.432 7.429 hybrid contribution -0.198 -0.259 -1.440 1.476 sum 4.867 -0.414 3.993 6.309 Atomic orbital electron populations 1.21732 0.93364 1.03352 1.01794 1.22582 0.96206 0.83192 1.00347 1.87932 1.22630 1.27786 1.95014 1.21806 0.80862 0.92554 1.00761 1.20992 1.02483 0.95369 0.96472 1.20042 0.82149 0.84108 0.84477 1.90473 1.38275 1.39550 1.84015 1.43558 1.32619 1.36609 1.03158 1.19853 0.98991 1.17683 1.10059 0.87159 1.26220 0.99414 0.96107 0.98522 1.70076 1.25251 1.36996 1.20719 0.85154 0.79207 0.77259 0.78546 1.16847 1.21187 1.20959 1.20950 0.93169 0.90832 0.94443 1.21611 1.01906 0.96107 0.95748 1.23401 0.81344 0.79345 0.82127 1.90702 1.28642 1.68745 1.56030 1.84504 1.59768 1.31429 1.56254 1.23042 1.01281 1.01184 0.92764 1.23069 0.88842 1.03742 1.00776 0.91962 0.94429 0.88294 0.94525 0.91100 0.93083 0.90408 0.92235 0.88433 0.95714 0.88269 0.86188 0.71181 0.89897 0.86137 0.85286 0.88631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.26 10.28 71.98 0.74 -3.52 16 2 C 0.05 1.73 6.66 71.98 0.48 2.21 16 3 O -0.41 -17.40 10.11 -148.98 -1.51 -18.91 16 4 C 0.12 4.41 5.65 71.98 0.41 4.82 16 5 C -0.15 -5.97 1.24 -52.93 -0.07 -6.03 16 6 C 0.50 25.15 6.63 87.66 0.58 25.73 16 7 O -0.64 -35.91 16.45 -3.06 -0.05 -35.96 16 8 N -0.44 -22.22 2.53 -635.54 -1.61 -23.84 16 9 C -0.34 -16.06 7.44 84.04 0.62 -15.44 16 10 H 0.11 4.79 6.43 -2.91 -0.02 4.77 16 11 C 0.00 0.00 4.97 84.93 0.42 0.43 16 12 N -0.89 -47.76 11.33 21.66 0.25 -47.51 16 13 Si 0.97 37.56 29.60 68.60 2.03 39.59 16 14 H -0.25 -8.58 7.11 99.48 0.71 -7.87 16 15 H -0.29 -11.12 7.11 99.48 0.71 -10.41 16 16 H -0.28 -11.08 7.11 99.48 0.71 -10.38 16 17 C 0.13 6.63 4.22 86.38 0.36 6.99 16 18 C -0.12 -4.67 6.13 29.85 0.18 -4.49 16 19 C 0.49 18.57 8.33 71.24 0.59 19.16 16 20 O -0.55 -24.63 16.74 21.96 0.37 -24.26 16 21 O -0.51 -13.84 13.42 -51.37 -0.69 -14.53 16 22 C -0.15 -4.69 9.76 30.62 0.30 -4.39 16 23 C -0.13 -3.82 8.74 30.62 0.27 -3.55 16 24 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.10 2.15 8.14 -2.38 -0.02 2.13 16 27 H 0.04 1.25 8.14 -2.39 -0.02 1.24 16 28 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.05 2.15 7.02 -2.38 -0.02 2.13 16 30 H 0.08 2.28 8.10 -2.39 -0.02 2.26 16 31 H 0.27 13.67 8.31 -92.70 -0.77 12.90 16 32 H 0.10 5.37 5.35 -2.38 -0.01 5.36 16 33 H 0.02 1.39 7.51 -2.39 -0.02 1.37 16 34 H 0.10 3.98 8.14 -2.38 -0.02 3.97 16 35 H 0.12 4.45 8.14 -2.39 -0.02 4.43 16 36 H 0.43 7.29 9.10 -74.05 -0.67 6.61 16 37 H 0.08 2.90 8.06 -2.38 -0.02 2.88 16 38 H 0.12 3.16 8.14 -2.39 -0.02 3.14 16 39 H 0.13 2.99 8.14 -2.39 -0.02 2.98 16 40 H 0.10 2.92 8.14 -2.39 -0.02 2.90 16 Total: -1.00 -72.32 342.87 4.06 -68.26 By element: Atomic # 1 Polarization: 34.85 SS G_CDS: 0.38 Total: 35.23 kcal Atomic # 6 Polarization: 17.04 SS G_CDS: 4.90 Total: 21.93 kcal Atomic # 7 Polarization: -69.98 SS G_CDS: -1.37 Total: -71.35 kcal Atomic # 8 Polarization: -91.78 SS G_CDS: -1.88 Total: -93.66 kcal Atomic # 14 Polarization: 37.56 SS G_CDS: 2.03 Total: 39.59 kcal Total: -72.32 4.06 -68.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605623902.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.828 kcal (2) G-P(sol) polarization free energy of solvation -72.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds