Wall clock time and date at job start Tue Mar 31 2020 05:25:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99897 * 2 1 4 4 H 1.48496 * 109.47208 * 270.00211 * 3 2 1 5 5 H 1.48506 * 109.47050 * 30.00259 * 3 2 1 6 6 H 1.48493 * 109.47273 * 149.99942 * 3 2 1 7 7 C 1.37877 * 120.00134 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99813 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99866 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47064 * 179.97438 * 9 7 2 11 11 N 1.46895 * 109.47331 * 179.97438 * 10 9 7 12 12 C 1.47915 * 110.99752 * 290.12624 * 11 10 9 13 13 C 1.54607 * 102.77063 * 265.36393 * 12 11 10 14 14 C 1.51855 * 102.68306 * 334.71531 * 13 12 11 15 15 C 1.38802 * 108.07752 * 15.68383 * 14 13 12 16 16 C 1.39459 * 119.15866 * 180.94304 * 15 14 13 17 17 C 1.38021 * 120.44509 * 359.71572 * 16 15 14 18 18 C 1.38050 * 120.40210 * 359.97438 * 17 16 15 19 19 C 1.38941 * 131.51526 * 196.26576 * 14 13 12 20 20 C 1.48479 * 120.07860 * 359.09831 * 19 14 13 21 21 N 1.34045 * 126.67058 * 359.64130 * 20 19 14 22 22 N 1.28987 * 107.26156 * 179.87208 * 21 20 19 23 23 N 1.28721 * 108.94832 * 0.39799 * 22 21 20 24 24 H 0.97004 * 125.34567 * 179.76436 * 23 22 21 25 25 N 1.28873 * 109.31419 * 359.74804 * 23 22 21 26 26 H 0.97003 * 120.00683 * 359.97438 * 1 2 3 27 27 H 1.08994 * 109.47460 * 60.00072 * 9 7 2 28 28 H 1.08997 * 109.46985 * 299.99397 * 9 7 2 29 29 H 1.09007 * 109.46975 * 59.99780 * 10 9 7 30 30 H 1.09004 * 109.47107 * 300.00096 * 10 9 7 31 31 H 1.09002 * 110.78499 * 23.73908 * 12 11 10 32 32 H 1.09002 * 110.78383 * 146.99669 * 12 11 10 33 33 H 1.08999 * 110.73968 * 92.92392 * 13 12 11 34 34 H 1.09002 * 110.74221 * 216.25300 * 13 12 11 35 35 H 1.07996 * 119.77750 * 179.69900 * 16 15 14 36 36 H 1.08002 * 119.79740 * 179.97438 * 17 16 15 37 37 H 1.08003 * 120.12994 * 180.11594 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5109 -4.9343 0.0012 12 6 0.8348 -5.1553 1.2981 13 6 1.8570 -6.0178 2.0737 14 6 2.6373 -6.6928 0.9594 15 6 2.3758 -6.0133 -0.2223 16 6 2.9652 -6.4567 -1.4059 17 6 3.8028 -7.5537 -1.4018 18 6 4.0681 -8.2257 -0.2255 19 6 3.4829 -7.7952 0.9643 20 6 3.7622 -8.5132 2.2335 21 7 3.2790 -8.2117 3.4469 22 7 3.7583 -9.0762 4.2755 23 7 4.5205 -9.8917 3.6344 24 1 5.0053 -10.6339 4.0281 25 7 4.5380 -9.5676 2.3872 26 1 -0.4851 0.8400 0.0004 27 1 0.6247 -2.5571 -0.8896 28 1 0.6241 -2.5567 0.8903 29 1 2.8720 -3.6043 0.8906 30 1 2.8720 -3.6043 -0.8895 31 1 0.6603 -4.2088 1.8096 32 1 -0.1011 -5.6964 1.1590 33 1 2.5124 -5.3901 2.6774 34 1 1.3478 -6.7553 2.6942 35 1 2.7648 -5.9384 -2.3319 36 1 4.2534 -7.8883 -2.3245 37 1 4.7257 -9.0825 -0.2270 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606347761.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:45 Heat of formation + Delta-G solvation = 160.379904 kcal Electronic energy + Delta-G solvation = -21484.595084 eV Core-core repulsion = 18264.913655 eV Total energy + Delta-G solvation = -3219.681428 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -44.56184 -40.52829 -36.93911 -34.54612 -33.62845 -33.42868 -31.76469 -30.33171 -28.81990 -28.09086 -24.97009 -24.38450 -24.31376 -22.58001 -21.23129 -21.06296 -19.77121 -19.08905 -17.26082 -16.80892 -16.04559 -15.82076 -15.34610 -15.10845 -14.54492 -14.31804 -13.88732 -13.52213 -13.21521 -12.78128 -12.58139 -12.29605 -12.22207 -12.02960 -11.60593 -11.48585 -11.24701 -11.19743 -11.02587 -10.98217 -10.92853 -10.63368 -10.59036 -10.06420 -9.63909 -9.17034 -8.92656 -8.57482 -8.34703 -7.52103 -6.00710 -4.03571 0.67958 1.12368 1.43224 2.09171 2.34097 3.32417 3.38707 3.41859 3.60379 3.79820 4.07194 4.15564 4.46942 4.79209 5.00606 5.10106 5.22383 5.33691 5.35325 5.42262 5.51312 5.55222 5.66593 5.88503 6.13015 6.14955 6.19316 6.22054 6.29545 6.37228 6.45782 6.48594 6.60976 6.80326 6.89111 7.30656 7.56118 7.78293 7.83487 8.03641 8.04477 8.39535 9.03110 9.60355 11.10508 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.024409 B = 0.003631 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.839580 B = 7709.714986 C = 8183.501529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.028 3.972 10 C 0.066 3.934 11 N -0.492 5.492 12 C 0.046 3.954 13 C -0.103 4.103 14 C -0.098 4.098 15 C 0.107 3.893 16 C -0.096 4.096 17 C -0.108 4.108 18 C -0.105 4.105 19 C 0.001 3.999 20 C 0.229 3.771 21 N -0.262 5.262 22 N -0.054 5.054 23 N -0.232 5.232 24 H 0.473 0.527 25 N -0.299 5.299 26 H 0.261 0.739 27 H 0.026 0.974 28 H 0.020 0.980 29 H 0.031 0.969 30 H 0.065 0.935 31 H 0.097 0.903 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.130 0.870 36 H 0.131 0.869 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.335 -20.767 3.425 22.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.010 4.010 10 C -0.057 4.057 11 N -0.209 5.209 12 C -0.080 4.080 13 C -0.141 4.141 14 C -0.103 4.103 15 C 0.010 3.990 16 C -0.117 4.117 17 C -0.126 4.126 18 C -0.126 4.126 19 C -0.003 4.003 20 C -0.051 4.051 21 N -0.135 5.135 22 N -0.049 5.049 23 N -0.077 5.077 24 H 0.327 0.673 25 N -0.151 5.151 26 H 0.071 0.929 27 H 0.044 0.956 28 H 0.038 0.962 29 H 0.049 0.951 30 H 0.083 0.917 31 H 0.116 0.884 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.109 0.891 35 H 0.148 0.852 36 H 0.149 0.851 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 7.713 -20.629 3.698 22.332 hybrid contribution 1.370 0.422 0.395 1.486 sum 9.082 -20.208 4.092 22.530 Atomic orbital electron populations 1.69966 1.06013 1.26660 1.50447 1.24979 0.94827 0.99178 0.95215 0.86591 0.79830 0.83440 0.78129 1.20624 1.21204 1.19898 1.21148 0.93007 0.90889 1.51166 0.92720 1.19140 0.93869 0.89889 0.98067 1.22512 0.96714 0.86654 0.99859 1.60333 1.26636 1.01803 1.32087 1.23250 0.96670 1.00762 0.87367 1.21787 0.97362 0.98791 0.96190 1.21126 0.97017 0.95775 0.96430 1.19748 0.92862 0.93668 0.92741 1.20727 0.97280 0.96779 0.96958 1.20781 0.98523 0.95512 0.97812 1.20930 1.00193 1.00490 0.90996 1.16560 1.01027 0.95261 0.87420 1.23799 0.94466 0.92156 0.94669 1.76176 1.20620 1.17818 0.98922 1.78923 1.04725 0.98835 1.22449 1.47709 1.32074 1.24562 1.03402 0.67290 1.74910 1.22931 1.17125 1.00139 0.92938 0.95558 0.96207 0.95067 0.91672 0.88424 0.89919 0.89711 0.89073 0.85203 0.85073 0.85170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.57 13.29 55.43 0.74 -25.83 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.53 29.54 -169.99 -5.02 16.50 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 7 C -0.52 -14.64 9.11 -34.44 -0.31 -14.96 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.03 0.71 5.01 -27.88 -0.14 0.57 16 10 C 0.07 1.40 4.69 -3.82 -0.02 1.38 16 11 N -0.49 -9.16 5.04 -169.02 -0.85 -10.01 16 12 C 0.05 0.78 6.71 -2.42 -0.02 0.76 16 13 C -0.10 -1.58 5.93 -26.47 -0.16 -1.74 16 14 C -0.10 -1.53 6.10 -103.58 -0.63 -2.16 16 15 C 0.11 1.77 5.53 -83.42 -0.46 1.31 16 16 C -0.10 -1.36 10.06 -39.21 -0.39 -1.75 16 17 C -0.11 -1.25 10.01 -39.73 -0.40 -1.64 16 18 C -0.11 -1.27 9.71 -39.22 -0.38 -1.65 16 19 C 0.00 0.02 5.87 -104.98 -0.62 -0.60 16 20 C 0.23 3.10 7.93 -156.31 -1.24 1.86 16 21 N -0.26 -3.68 10.88 32.16 0.35 -3.33 16 22 N -0.05 -0.62 13.47 60.35 0.81 0.19 16 23 N -0.23 -1.97 7.90 60.35 0.48 -1.50 16 24 H 0.47 1.55 8.96 -340.37 -3.05 -1.50 16 25 N -0.30 -3.34 12.08 32.17 0.39 -2.95 16 26 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 27 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.02 0.53 6.59 -51.93 -0.34 0.18 16 29 H 0.03 0.66 8.04 -51.93 -0.42 0.24 16 30 H 0.06 1.36 8.06 -51.93 -0.42 0.94 16 31 H 0.10 1.75 6.26 -51.93 -0.32 1.42 16 32 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 33 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 34 H 0.09 1.31 7.55 -51.93 -0.39 0.91 16 35 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 36 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 37 H 0.13 1.31 7.89 -52.48 -0.41 0.90 16 LS Contribution 315.57 15.07 4.76 4.76 Total: -1.00 -32.54 315.57 -10.23 -42.77 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: -7.02 Total: -3.56 kcal Atomic # 6 Polarization: -12.16 SS G_CDS: -4.86 Total: -17.03 kcal Atomic # 7 Polarization: -45.36 SS G_CDS: 1.91 Total: -43.44 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -32.54 -10.23 -42.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606347761.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 203.153 kcal (2) G-P(sol) polarization free energy of solvation -32.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 170.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 160.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds