Wall clock time and date at job start Tue Mar 31 2020 05:25:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99897 * 2 1 4 4 H 1.48496 * 109.47208 * 270.00211 * 3 2 1 5 5 H 1.48506 * 109.47050 * 30.00259 * 3 2 1 6 6 H 1.48493 * 109.47273 * 149.99942 * 3 2 1 7 7 C 1.37877 * 120.00134 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99813 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99866 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47064 * 179.97438 * 9 7 2 11 11 N 1.46895 * 109.47331 * 179.97438 * 10 9 7 12 12 C 1.47915 * 110.99752 * 290.12624 * 11 10 9 13 13 C 1.54607 * 102.77063 * 265.36393 * 12 11 10 14 14 C 1.51855 * 102.68306 * 334.71531 * 13 12 11 15 15 C 1.38802 * 108.07752 * 15.68383 * 14 13 12 16 16 C 1.39459 * 119.15866 * 180.94304 * 15 14 13 17 17 C 1.38021 * 120.44509 * 359.71572 * 16 15 14 18 18 C 1.38050 * 120.40210 * 359.97438 * 17 16 15 19 19 C 1.38941 * 131.51526 * 196.26576 * 14 13 12 20 20 C 1.48479 * 120.07860 * 359.09831 * 19 14 13 21 21 N 1.34045 * 126.67058 * 359.64130 * 20 19 14 22 22 N 1.28987 * 107.26156 * 179.87208 * 21 20 19 23 23 N 1.28721 * 108.94832 * 0.39799 * 22 21 20 24 24 H 0.97004 * 125.34567 * 179.76436 * 23 22 21 25 25 N 1.28873 * 109.31419 * 359.74804 * 23 22 21 26 26 H 0.97003 * 120.00683 * 359.97438 * 1 2 3 27 27 H 1.08994 * 109.47460 * 60.00072 * 9 7 2 28 28 H 1.08997 * 109.46985 * 299.99397 * 9 7 2 29 29 H 1.09007 * 109.46975 * 59.99780 * 10 9 7 30 30 H 1.09004 * 109.47107 * 300.00096 * 10 9 7 31 31 H 1.09002 * 110.78499 * 23.73908 * 12 11 10 32 32 H 1.09002 * 110.78383 * 146.99669 * 12 11 10 33 33 H 1.08999 * 110.73968 * 92.92392 * 13 12 11 34 34 H 1.09002 * 110.74221 * 216.25300 * 13 12 11 35 35 H 1.07996 * 119.77750 * 179.69900 * 16 15 14 36 36 H 1.08002 * 119.79740 * 179.97438 * 17 16 15 37 37 H 1.08003 * 120.12994 * 180.11594 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 7 1.5109 -4.9343 0.0012 12 6 0.8348 -5.1553 1.2981 13 6 1.8570 -6.0178 2.0737 14 6 2.6373 -6.6928 0.9594 15 6 2.3758 -6.0133 -0.2223 16 6 2.9652 -6.4567 -1.4059 17 6 3.8028 -7.5537 -1.4018 18 6 4.0681 -8.2257 -0.2255 19 6 3.4829 -7.7952 0.9643 20 6 3.7622 -8.5132 2.2335 21 7 3.2790 -8.2117 3.4469 22 7 3.7583 -9.0762 4.2755 23 7 4.5205 -9.8917 3.6344 24 1 5.0053 -10.6339 4.0281 25 7 4.5380 -9.5676 2.3872 26 1 -0.4851 0.8400 0.0004 27 1 0.6247 -2.5571 -0.8896 28 1 0.6241 -2.5567 0.8903 29 1 2.8720 -3.6043 0.8906 30 1 2.8720 -3.6043 -0.8895 31 1 0.6603 -4.2088 1.8096 32 1 -0.1011 -5.6964 1.1590 33 1 2.5124 -5.3901 2.6774 34 1 1.3478 -6.7553 2.6942 35 1 2.7648 -5.9384 -2.3319 36 1 4.2534 -7.8883 -2.3245 37 1 4.7257 -9.0825 -0.2270 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606347761.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:44 Heat of formation + Delta-G solvation = 138.940568 kcal Electronic energy + Delta-G solvation = -21485.524763 eV Core-core repulsion = 18264.913655 eV Total energy + Delta-G solvation = -3220.611108 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -45.45517 -41.74597 -38.15867 -35.47980 -35.41004 -34.57535 -33.30279 -31.70456 -30.00262 -29.60232 -26.50952 -25.62059 -25.36032 -23.96415 -22.62871 -22.19191 -21.13510 -20.03718 -18.65475 -18.14355 -17.48959 -17.02443 -16.64673 -16.39079 -16.31777 -15.50374 -15.06655 -14.92381 -14.54849 -14.21979 -14.03567 -13.76780 -13.28609 -13.26452 -13.12524 -12.85217 -12.72456 -12.47969 -12.38906 -12.28622 -12.07511 -12.00262 -11.94058 -11.86464 -11.47530 -11.29105 -10.54752 -10.28483 -9.60639 -8.83120 -8.18854 -6.30291 -0.29305 0.19313 0.35167 1.32534 1.41800 1.43079 1.43328 1.54065 2.40797 2.65737 2.70279 2.86961 3.14621 3.19713 3.63952 3.82654 4.08004 4.12587 4.23863 4.28450 4.43017 4.49654 4.52228 4.57492 4.65107 4.78216 4.81016 4.99265 5.04964 5.12211 5.36945 5.39645 5.46209 5.47785 5.63004 5.63798 5.74895 5.82837 6.02274 6.26641 6.37973 6.85600 7.12899 7.38681 8.93055 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.024409 B = 0.003631 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.839580 B = 7709.714986 C = 8183.501529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.004 3.996 3 Si 0.965 3.035 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.264 1.264 7 C -0.545 4.545 8 H 0.059 0.941 9 C 0.037 3.963 10 C 0.087 3.913 11 N -0.505 5.505 12 C 0.045 3.955 13 C -0.091 4.091 14 C -0.111 4.111 15 C 0.074 3.926 16 C -0.102 4.102 17 C -0.093 4.093 18 C -0.092 4.092 19 C -0.007 4.007 20 C 0.212 3.788 21 N -0.293 5.293 22 N -0.060 5.060 23 N -0.199 5.199 24 H 0.495 0.505 25 N -0.289 5.289 26 H 0.264 0.736 27 H -0.004 1.004 28 H -0.001 1.001 29 H 0.025 0.975 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.073 0.927 34 H 0.099 0.901 35 H 0.135 0.865 36 H 0.171 0.829 37 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.665 -22.503 2.995 25.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.789 3.211 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.189 1.189 7 C -0.583 4.583 8 H 0.077 0.923 9 C 0.000 4.000 10 C -0.038 4.038 11 N -0.221 5.221 12 C -0.081 4.081 13 C -0.129 4.129 14 C -0.116 4.116 15 C -0.022 4.022 16 C -0.123 4.123 17 C -0.112 4.112 18 C -0.113 4.113 19 C -0.011 4.011 20 C -0.068 4.068 21 N -0.165 5.165 22 N -0.055 5.055 23 N -0.050 5.050 24 H 0.354 0.646 25 N -0.142 5.142 26 H 0.073 0.927 27 H 0.014 0.986 28 H 0.017 0.983 29 H 0.043 0.957 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.111 0.889 33 H 0.092 0.908 34 H 0.117 0.883 35 H 0.153 0.847 36 H 0.189 0.811 37 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 10.060 -22.408 3.285 24.781 hybrid contribution 0.707 0.766 0.550 1.179 sum 10.768 -21.642 3.835 24.475 Atomic orbital electron populations 1.70101 1.07754 1.27810 1.51279 1.25924 0.95729 1.03199 0.94586 0.85449 0.78617 0.78442 0.78545 1.19659 1.20718 1.18857 1.21569 0.93477 0.92140 1.51111 0.92253 1.18944 0.94056 0.91512 0.95499 1.22066 0.95289 0.86907 0.99509 1.60260 1.27327 1.01534 1.33028 1.23225 0.97612 1.00194 0.87109 1.21613 0.96770 0.98419 0.96086 1.21098 0.97965 0.96694 0.95803 1.19866 0.94486 0.93628 0.94226 1.21001 0.97329 0.97613 0.96308 1.21192 0.96881 0.93820 0.99261 1.21307 0.99209 1.00601 0.90177 1.16762 1.00780 0.94897 0.88642 1.23765 0.95494 0.93044 0.94492 1.76162 1.21848 1.19044 0.99485 1.78870 1.05273 0.99106 1.22256 1.47780 1.30549 1.24107 1.02592 0.64623 1.74854 1.22137 1.16207 1.00967 0.92709 0.98600 0.98262 0.95655 0.91573 0.90484 0.88876 0.90823 0.88315 0.84707 0.81124 0.82497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.86 13.29 21.45 0.28 -56.57 16 2 C 0.00 0.22 5.46 84.66 0.46 0.69 16 3 Si 0.97 44.45 29.54 68.60 2.03 46.48 16 4 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 5 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 6 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 7 C -0.54 -31.27 9.11 25.60 0.23 -31.04 16 8 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 9 C 0.04 2.01 5.01 29.85 0.15 2.16 16 10 C 0.09 3.82 4.69 86.31 0.40 4.23 16 11 N -0.50 -19.50 5.04 -688.66 -3.47 -22.97 16 12 C 0.05 1.61 6.71 86.66 0.58 2.19 16 13 C -0.09 -2.87 5.93 30.76 0.18 -2.69 16 14 C -0.11 -3.43 6.10 -19.19 -0.12 -3.55 16 15 C 0.07 2.45 5.53 38.25 0.21 2.66 16 16 C -0.10 -2.71 10.06 22.51 0.23 -2.49 16 17 C -0.09 -1.84 10.01 22.17 0.22 -1.62 16 18 C -0.09 -1.92 9.71 22.51 0.22 -1.70 16 19 C -0.01 -0.18 5.87 -20.10 -0.12 -0.30 16 20 C 0.21 5.37 7.93 137.39 1.09 6.46 16 21 N -0.29 -7.96 10.88 -52.17 -0.57 -8.53 16 22 N -0.06 -1.29 13.47 37.02 0.50 -0.79 16 23 N -0.20 -2.86 7.90 37.02 0.29 -2.57 16 24 H 0.49 1.70 8.96 -347.53 -3.12 -1.41 16 25 N -0.29 -5.64 12.08 -52.12 -0.63 -6.27 16 26 H 0.26 15.15 8.31 -92.71 -0.77 14.37 16 27 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 28 H 0.00 -0.05 6.59 -2.39 -0.02 -0.07 16 29 H 0.03 1.11 8.04 -2.38 -0.02 1.10 16 30 H 0.07 2.83 8.06 -2.39 -0.02 2.81 16 31 H 0.08 2.99 6.26 -2.39 -0.01 2.98 16 32 H 0.09 3.03 8.14 -2.39 -0.02 3.01 16 33 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.10 2.91 7.55 -2.39 -0.02 2.89 16 35 H 0.14 3.39 8.06 -2.91 -0.02 3.36 16 36 H 0.17 2.03 8.06 -2.91 -0.02 2.01 16 37 H 0.16 2.43 7.89 -2.91 -0.02 2.41 16 Total: -1.00 -71.83 315.57 0.17 -71.65 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -2.00 Total: 4.58 kcal Atomic # 6 Polarization: -28.75 SS G_CDS: 3.75 Total: -25.00 kcal Atomic # 7 Polarization: -94.12 SS G_CDS: -3.59 Total: -97.71 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Total: -71.83 0.17 -71.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606347761.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 210.592 kcal (2) G-P(sol) polarization free energy of solvation -71.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds