Wall clock time and date at job start Tue Mar 31 2020 05:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00021 * 2 1 4 4 H 1.48499 * 109.46961 * 269.99767 * 3 2 1 5 5 H 1.48499 * 109.47401 * 29.99765 * 3 2 1 6 6 H 1.48500 * 109.47073 * 149.99835 * 3 2 1 7 7 C 1.37869 * 119.99927 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00545 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99987 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47008 * 180.02562 * 9 7 2 11 11 N 1.46901 * 109.46745 * 180.02562 * 10 9 7 12 12 C 1.47892 * 111.00420 * 290.01055 * 11 10 9 13 13 C 1.54587 * 102.64599 * 265.38056 * 12 11 10 14 14 C 1.51624 * 102.82720 * 334.35925 * 13 12 11 15 15 C 1.38036 * 131.40650 * 196.32314 * 14 13 12 16 16 C 1.38080 * 120.23222 * 179.66511 * 15 14 13 17 17 C 1.39353 * 119.77002 * 359.97438 * 16 15 14 18 18 C 1.48466 * 119.99513 * 180.11363 * 17 16 15 19 19 N 1.34045 * 126.67445 * 179.68589 * 18 17 16 20 20 N 1.28987 * 107.26925 * 179.89607 * 19 18 17 21 21 N 1.28725 * 108.94421 * 0.37082 * 20 19 18 22 22 H 0.96997 * 125.34297 * 179.72400 * 21 20 19 23 23 N 1.28872 * 109.31447 * 359.76864 * 21 20 19 24 24 C 1.38976 * 120.00955 * 0.32908 * 17 16 15 25 25 C 1.39052 * 107.91263 * 16.19776 * 14 13 12 26 26 H 0.97000 * 120.00053 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.46987 * 60.00603 * 9 7 2 28 28 H 1.08997 * 109.47220 * 299.99993 * 9 7 2 29 29 H 1.09003 * 109.46865 * 60.00392 * 10 9 7 30 30 H 1.08997 * 109.47013 * 299.99984 * 10 9 7 31 31 H 1.09006 * 110.77290 * 23.66566 * 12 11 10 32 32 H 1.08992 * 110.77465 * 146.90347 * 12 11 10 33 33 H 1.09006 * 110.74353 * 92.68887 * 13 12 11 34 34 H 1.09002 * 110.74331 * 216.02109 * 13 12 11 35 35 H 1.07995 * 119.88704 * 359.62892 * 15 14 13 36 36 H 1.08005 * 120.11375 * 179.97438 * 16 15 14 37 37 H 1.08001 * 119.94720 * 179.75745 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5106 -4.9343 -0.0012 12 6 0.8360 -5.1574 1.2959 13 6 1.8610 -6.0207 2.0664 14 6 2.6339 -6.6999 0.9527 15 6 3.4705 -7.7978 0.9598 16 6 4.0595 -8.2307 -0.2116 17 6 3.8064 -7.5555 -1.4040 18 6 4.4351 -8.0182 -2.6669 19 7 4.2812 -7.4763 -3.8832 20 7 4.9946 -8.1696 -4.7043 21 7 5.5753 -9.1178 -4.0557 22 1 6.1655 -9.7829 -4.4430 23 7 5.2485 -9.0452 -2.8112 24 6 2.9691 -6.4463 -1.4104 25 6 2.3750 -6.0129 -0.2282 26 1 -0.4850 0.8400 -0.0004 27 1 0.6240 -2.5567 -0.8904 28 1 0.6246 -2.5571 0.8896 29 1 2.8718 -3.6043 0.8895 30 1 2.8719 -3.6043 -0.8905 31 1 0.6633 -4.2117 1.8096 32 1 -0.1009 -5.6967 1.1565 33 1 2.5202 -5.3936 2.6668 34 1 1.3542 -6.7575 2.6896 35 1 3.6656 -8.3197 1.8850 36 1 4.7142 -9.0897 -0.2037 37 1 2.7767 -5.9214 -2.3345 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606348521.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:31 Heat of formation + Delta-G solvation = 159.442802 kcal Electronic energy + Delta-G solvation = -21214.014421 eV Core-core repulsion = 17994.292357 eV Total energy + Delta-G solvation = -3219.722064 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.55373 -40.54905 -37.08591 -34.47164 -33.77347 -33.04075 -31.89758 -30.53232 -28.89687 -28.11875 -24.87379 -24.53051 -24.16765 -22.55348 -21.62341 -20.77406 -19.71421 -19.27825 -17.24257 -16.86983 -16.06928 -15.89952 -15.34470 -15.04591 -14.47188 -14.31553 -13.66987 -13.61079 -13.34909 -12.90232 -12.64989 -12.36187 -12.27387 -12.21112 -11.67493 -11.46703 -11.25348 -11.23288 -11.05850 -10.97468 -10.89282 -10.67237 -10.52752 -10.05469 -9.66030 -9.17259 -8.96503 -8.59487 -8.34552 -7.53341 -6.00749 -4.03588 0.66580 1.11523 1.46471 2.09892 2.30870 3.32867 3.39034 3.41872 3.54254 3.78712 4.02889 4.24897 4.47233 4.70244 4.96703 5.08471 5.16907 5.30244 5.35615 5.36833 5.39371 5.44905 5.72541 5.90174 5.96424 6.07128 6.11560 6.19888 6.26530 6.31557 6.43057 6.46835 6.59750 6.77313 6.88781 7.29394 7.54321 7.76784 7.83411 8.04103 8.04532 8.39368 9.03040 9.60424 11.10491 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.017776 B = 0.003804 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.792384 B = 7359.460151 C = 8505.982530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.028 3.972 10 C 0.066 3.934 11 N -0.493 5.493 12 C 0.048 3.952 13 C -0.111 4.111 14 C -0.123 4.123 15 C -0.093 4.093 16 C -0.102 4.102 17 C -0.010 4.010 18 C 0.230 3.770 19 N -0.263 5.263 20 N -0.051 5.051 21 N -0.232 5.232 22 H 0.474 0.526 23 N -0.298 5.298 24 C -0.074 4.074 25 C 0.108 3.892 26 H 0.261 0.739 27 H 0.027 0.973 28 H 0.019 0.981 29 H 0.031 0.969 30 H 0.066 0.934 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.125 0.875 36 H 0.131 0.869 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.968 -20.389 -0.659 22.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.010 4.010 10 C -0.058 4.058 11 N -0.209 5.209 12 C -0.079 4.079 13 C -0.149 4.149 14 C -0.127 4.127 15 C -0.112 4.112 16 C -0.123 4.123 17 C -0.014 4.014 18 C -0.050 4.050 19 N -0.136 5.136 20 N -0.047 5.047 21 N -0.077 5.077 22 H 0.328 0.672 23 N -0.150 5.150 24 C -0.096 4.096 25 C 0.011 3.989 26 H 0.071 0.929 27 H 0.045 0.955 28 H 0.037 0.963 29 H 0.049 0.951 30 H 0.084 0.916 31 H 0.116 0.884 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.143 0.857 36 H 0.149 0.851 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 8.528 -20.118 -1.731 21.919 hybrid contribution 1.299 0.406 0.687 1.525 sum 9.827 -19.712 -1.044 22.051 Atomic orbital electron populations 1.69969 1.06012 1.26658 1.50467 1.24975 0.94829 0.99179 0.95199 0.86591 0.79795 0.83417 0.78186 1.20580 1.21218 1.19906 1.21146 0.93018 0.90880 1.51160 0.92709 1.19144 0.93860 0.89894 0.98058 1.22526 0.96719 0.86607 0.99923 1.60243 1.26932 1.01857 1.31871 1.23211 0.96590 1.00662 0.87395 1.21773 0.97743 0.98839 0.96584 1.21343 0.98189 0.97510 0.95641 1.20235 0.97070 0.96013 0.97881 1.20898 1.00422 1.00080 0.90929 1.16827 0.99751 0.97416 0.87359 1.23683 0.96079 0.90760 0.94452 1.76170 1.16609 1.21716 0.99128 1.78932 1.05778 0.97682 1.22271 1.47716 1.33448 1.23198 1.03376 0.67249 1.74898 1.17874 1.21832 1.00407 1.20428 0.96127 0.95280 0.97791 1.19622 0.92761 0.93851 0.92678 0.92941 0.95475 0.96288 0.95075 0.91567 0.88424 0.89835 0.89765 0.89755 0.85683 0.85099 0.84405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.58 13.29 55.43 0.74 -25.85 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 7 C -0.52 -14.67 9.11 -34.44 -0.31 -14.98 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.03 0.71 5.01 -27.88 -0.14 0.57 16 10 C 0.07 1.39 4.69 -3.82 -0.02 1.37 16 11 N -0.49 -9.12 5.04 -169.05 -0.85 -9.97 16 12 C 0.05 0.76 6.72 -2.44 -0.02 0.75 16 13 C -0.11 -1.45 6.93 -26.59 -0.18 -1.64 16 14 C -0.12 -1.74 6.23 -103.94 -0.65 -2.39 16 15 C -0.09 -1.11 10.02 -39.71 -0.40 -1.51 16 16 C -0.10 -1.23 9.70 -39.22 -0.38 -1.61 16 17 C -0.01 -0.13 5.87 -104.99 -0.62 -0.75 16 18 C 0.23 3.13 7.93 -156.31 -1.24 1.89 16 19 N -0.26 -3.84 12.21 32.16 0.39 -3.44 16 20 N -0.05 -0.61 13.47 60.35 0.81 0.20 16 21 N -0.23 -1.99 7.90 60.35 0.48 -1.52 16 22 H 0.47 1.57 8.96 -340.38 -3.05 -1.49 16 23 N -0.30 -3.33 12.08 32.17 0.39 -2.94 16 24 C -0.07 -1.17 9.72 -38.94 -0.38 -1.55 16 25 C 0.11 1.79 5.53 -83.42 -0.46 1.33 16 26 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 27 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.02 0.50 6.59 -51.93 -0.34 0.16 16 29 H 0.03 0.64 8.03 -51.93 -0.42 0.23 16 30 H 0.07 1.42 8.06 -51.93 -0.42 1.00 16 31 H 0.10 1.65 6.26 -51.93 -0.33 1.32 16 32 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 34 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 36 H 0.13 1.31 7.88 -52.48 -0.41 0.89 16 37 H 0.14 2.27 7.87 -52.49 -0.41 1.86 16 LS Contribution 318.08 15.07 4.79 4.79 Total: -1.00 -32.68 318.08 -10.20 -42.88 By element: Atomic # 1 Polarization: 3.25 SS G_CDS: -7.04 Total: -3.79 kcal Atomic # 6 Polarization: -12.02 SS G_CDS: -4.89 Total: -16.91 kcal Atomic # 7 Polarization: -45.47 SS G_CDS: 1.96 Total: -43.52 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.68 -10.20 -42.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606348521.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.319 kcal (2) G-P(sol) polarization free energy of solvation -32.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 169.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 159.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds