Wall clock time and date at job start Tue Mar 31 2020 05:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 120.00021 * 2 1 4 4 H 1.48499 * 109.46961 * 269.99767 * 3 2 1 5 5 H 1.48499 * 109.47401 * 29.99765 * 3 2 1 6 6 H 1.48500 * 109.47073 * 149.99835 * 3 2 1 7 7 C 1.37869 * 119.99927 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00545 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99987 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47008 * 180.02562 * 9 7 2 11 11 N 1.46901 * 109.46745 * 180.02562 * 10 9 7 12 12 C 1.47892 * 111.00420 * 290.01055 * 11 10 9 13 13 C 1.54587 * 102.64599 * 265.38056 * 12 11 10 14 14 C 1.51624 * 102.82720 * 334.35925 * 13 12 11 15 15 C 1.38036 * 131.40650 * 196.32314 * 14 13 12 16 16 C 1.38080 * 120.23222 * 179.66511 * 15 14 13 17 17 C 1.39353 * 119.77002 * 359.97438 * 16 15 14 18 18 C 1.48466 * 119.99513 * 180.11363 * 17 16 15 19 19 N 1.34045 * 126.67445 * 179.68589 * 18 17 16 20 20 N 1.28987 * 107.26925 * 179.89607 * 19 18 17 21 21 N 1.28725 * 108.94421 * 0.37082 * 20 19 18 22 22 H 0.96997 * 125.34297 * 179.72400 * 21 20 19 23 23 N 1.28872 * 109.31447 * 359.76864 * 21 20 19 24 24 C 1.38976 * 120.00955 * 0.32908 * 17 16 15 25 25 C 1.39052 * 107.91263 * 16.19776 * 14 13 12 26 26 H 0.97000 * 120.00053 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.46987 * 60.00603 * 9 7 2 28 28 H 1.08997 * 109.47220 * 299.99993 * 9 7 2 29 29 H 1.09003 * 109.46865 * 60.00392 * 10 9 7 30 30 H 1.08997 * 109.47013 * 299.99984 * 10 9 7 31 31 H 1.09006 * 110.77290 * 23.66566 * 12 11 10 32 32 H 1.08992 * 110.77465 * 146.90347 * 12 11 10 33 33 H 1.09006 * 110.74353 * 92.68887 * 13 12 11 34 34 H 1.09002 * 110.74331 * 216.02109 * 13 12 11 35 35 H 1.07995 * 119.88704 * 359.62892 * 15 14 13 36 36 H 1.08005 * 120.11375 * 179.97438 * 16 15 14 37 37 H 1.08001 * 119.94720 * 179.75745 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5106 -4.9343 -0.0012 12 6 0.8360 -5.1574 1.2959 13 6 1.8610 -6.0207 2.0664 14 6 2.6339 -6.6999 0.9527 15 6 3.4705 -7.7978 0.9598 16 6 4.0595 -8.2307 -0.2116 17 6 3.8064 -7.5555 -1.4040 18 6 4.4351 -8.0182 -2.6669 19 7 4.2812 -7.4763 -3.8832 20 7 4.9946 -8.1696 -4.7043 21 7 5.5753 -9.1178 -4.0557 22 1 6.1655 -9.7829 -4.4430 23 7 5.2485 -9.0452 -2.8112 24 6 2.9691 -6.4463 -1.4104 25 6 2.3750 -6.0129 -0.2282 26 1 -0.4850 0.8400 -0.0004 27 1 0.6240 -2.5567 -0.8904 28 1 0.6246 -2.5571 0.8896 29 1 2.8718 -3.6043 0.8895 30 1 2.8719 -3.6043 -0.8905 31 1 0.6633 -4.2117 1.8096 32 1 -0.1009 -5.6967 1.1565 33 1 2.5202 -5.3936 2.6668 34 1 1.3542 -6.7575 2.6896 35 1 3.6656 -8.3197 1.8850 36 1 4.7142 -9.0897 -0.2037 37 1 2.7767 -5.9214 -2.3345 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606348521.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:30 Heat of formation + Delta-G solvation = 137.539797 kcal Electronic energy + Delta-G solvation = -21214.964207 eV Core-core repulsion = 17994.292357 eV Total energy + Delta-G solvation = -3220.671850 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -45.47533 -41.73799 -38.27642 -35.64407 -35.28366 -34.38530 -33.19115 -32.04842 -30.00690 -29.61733 -26.50325 -25.64269 -25.34611 -23.70200 -23.12235 -21.86520 -21.19197 -20.16886 -18.67968 -18.15240 -17.55132 -17.08334 -16.65144 -16.36241 -16.24051 -15.41575 -15.02819 -14.88425 -14.42134 -14.36090 -14.16859 -13.77058 -13.45992 -13.30840 -13.15096 -12.90346 -12.74483 -12.50519 -12.40627 -12.24339 -12.17283 -12.06675 -11.90671 -11.73615 -11.44142 -11.29243 -10.55550 -10.29429 -9.64885 -8.80630 -8.19871 -6.31372 -0.32580 0.16260 0.37475 1.27636 1.40852 1.41698 1.42540 1.53272 2.39533 2.53798 2.71683 2.92513 3.13581 3.21777 3.62365 3.84563 4.06253 4.12180 4.18113 4.29280 4.37392 4.41983 4.49823 4.58726 4.65782 4.82545 4.90241 4.95761 4.99580 5.14167 5.30898 5.40569 5.42182 5.49256 5.61487 5.62902 5.74692 5.79956 6.04142 6.26074 6.36538 6.84313 7.10830 7.37659 8.92059 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.017776 B = 0.003804 C = 0.003291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.792384 B = 7359.460151 C = 8505.982530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.005 3.995 3 Si 0.965 3.035 4 H -0.274 1.274 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.545 4.545 8 H 0.058 0.942 9 C 0.038 3.962 10 C 0.088 3.912 11 N -0.513 5.513 12 C 0.042 3.958 13 C -0.100 4.100 14 C -0.122 4.122 15 C -0.082 4.082 16 C -0.087 4.087 17 C -0.015 4.015 18 C 0.214 3.786 19 N -0.302 5.302 20 N -0.058 5.058 21 N -0.197 5.197 22 H 0.495 0.505 23 N -0.285 5.285 24 C -0.090 4.090 25 C 0.075 3.925 26 H 0.264 0.736 27 H -0.010 1.010 28 H 0.004 0.996 29 H 0.034 0.966 30 H 0.054 0.946 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.087 0.913 34 H 0.118 0.882 35 H 0.165 0.835 36 H 0.160 0.840 37 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.125 -22.418 0.550 25.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.789 3.211 4 H -0.200 1.200 5 H -0.205 1.205 6 H -0.187 1.187 7 C -0.584 4.584 8 H 0.077 0.923 9 C 0.000 4.000 10 C -0.037 4.037 11 N -0.231 5.231 12 C -0.084 4.084 13 C -0.137 4.137 14 C -0.126 4.126 15 C -0.100 4.100 16 C -0.107 4.107 17 C -0.019 4.019 18 C -0.066 4.066 19 N -0.174 5.174 20 N -0.053 5.053 21 N -0.049 5.049 22 H 0.355 0.645 23 N -0.138 5.138 24 C -0.112 4.112 25 C -0.021 4.021 26 H 0.073 0.927 27 H 0.009 0.991 28 H 0.023 0.977 29 H 0.052 0.948 30 H 0.072 0.928 31 H 0.096 0.904 32 H 0.112 0.888 33 H 0.105 0.895 34 H 0.136 0.864 35 H 0.183 0.817 36 H 0.177 0.823 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 10.705 -22.184 -0.540 24.637 hybrid contribution 0.680 0.871 0.239 1.131 sum 11.385 -21.312 -0.301 24.164 Atomic orbital electron populations 1.70101 1.07733 1.27827 1.51240 1.25918 0.95739 1.03179 0.94540 0.85453 0.78722 0.78465 0.78445 1.20009 1.20478 1.18679 1.21566 0.93450 0.92185 1.51186 0.92347 1.18943 0.94029 0.91498 0.95480 1.22039 0.95279 0.87031 0.99350 1.60104 1.27700 1.01408 1.33840 1.23255 0.97875 1.00557 0.86705 1.21726 0.96897 0.98922 0.96203 1.21533 0.98468 0.97887 0.94690 1.20638 0.95242 0.94792 0.99343 1.21260 0.99582 0.99946 0.89949 1.16948 0.99383 0.96997 0.88569 1.23683 0.97053 0.91596 0.94224 1.76164 1.18091 1.23187 0.99980 1.78873 1.06078 0.98278 1.22099 1.47791 1.32068 1.22429 1.02579 0.64514 1.74843 1.17064 1.20750 1.01155 1.20374 0.97450 0.96422 0.96976 1.19661 0.94276 0.94116 0.94088 0.92681 0.99108 0.97749 0.94795 0.92787 0.90394 0.88846 0.89475 0.86368 0.81707 0.82265 0.86637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.98 13.29 21.44 0.28 -56.70 16 2 C 0.00 0.26 5.46 84.65 0.46 0.73 16 3 Si 0.96 44.70 29.54 68.60 2.03 46.72 16 4 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 5 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 6 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 7 C -0.55 -31.56 9.11 25.60 0.23 -31.33 16 8 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 9 C 0.04 2.06 5.01 29.85 0.15 2.21 16 10 C 0.09 3.90 4.69 86.30 0.40 4.31 16 11 N -0.51 -19.83 5.04 -688.75 -3.47 -23.30 16 12 C 0.04 1.36 6.72 86.65 0.58 1.94 16 13 C -0.10 -2.41 6.93 30.68 0.21 -2.19 16 14 C -0.12 -3.21 6.23 -19.42 -0.12 -3.34 16 15 C -0.08 -1.63 10.02 22.18 0.22 -1.41 16 16 C -0.09 -1.80 9.70 22.50 0.22 -1.59 16 17 C -0.02 -0.41 5.87 -20.10 -0.12 -0.53 16 18 C 0.21 5.62 7.93 137.38 1.09 6.71 16 19 N -0.30 -8.84 12.21 -52.18 -0.64 -9.48 16 20 N -0.06 -1.33 13.47 37.02 0.50 -0.83 16 21 N -0.20 -2.95 7.90 37.02 0.29 -2.66 16 22 H 0.50 1.86 8.96 -347.55 -3.12 -1.26 16 23 N -0.29 -5.68 12.08 -52.13 -0.63 -6.31 16 24 C -0.09 -2.94 9.72 22.68 0.22 -2.72 16 25 C 0.08 2.51 5.53 38.26 0.21 2.72 16 26 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 27 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 28 H 0.00 0.24 6.59 -2.39 -0.02 0.22 16 29 H 0.03 1.45 8.03 -2.39 -0.02 1.43 16 30 H 0.05 2.47 8.06 -2.39 -0.02 2.45 16 31 H 0.08 2.76 6.26 -2.38 -0.01 2.75 16 32 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 33 H 0.09 2.08 8.14 -2.38 -0.02 2.06 16 34 H 0.12 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.17 2.03 8.06 -2.91 -0.02 2.01 16 36 H 0.16 2.42 7.88 -2.91 -0.02 2.40 16 37 H 0.12 4.16 7.87 -2.91 -0.02 4.14 16 Total: -1.00 -73.59 318.08 0.13 -73.46 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -2.00 Total: 3.57 kcal Atomic # 6 Polarization: -28.25 SS G_CDS: 3.77 Total: -24.48 kcal Atomic # 7 Polarization: -95.61 SS G_CDS: -3.66 Total: -99.27 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Total: -73.59 0.13 -73.46 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606348521.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 211.000 kcal (2) G-P(sol) polarization free energy of solvation -73.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds