Wall clock time and date at job start Tue Mar 31 2020 05:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 119.99856 * 2 1 4 4 H 1.48496 * 109.47181 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47057 * 299.99882 * 3 2 1 6 6 H 1.48493 * 109.47193 * 60.00101 * 3 2 1 7 7 C 1.38809 * 120.00098 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99822 * 200.48900 * 7 2 1 9 9 N 1.36932 * 120.00081 * 20.49201 * 7 2 1 10 10 C 1.46500 * 120.00049 * 38.10711 * 9 7 2 11 11 C 1.50692 * 109.47622 * 89.99986 * 10 9 7 12 12 C 1.38335 * 119.94229 * 270.02281 * 11 10 9 13 13 C 1.38290 * 120.24008 * 179.97438 * 12 11 10 14 14 C 1.38054 * 120.11704 * 0.02562 * 13 12 11 15 15 C 1.39283 * 119.87984 * 0.02562 * 14 13 12 16 16 C 1.48464 * 120.11523 * 179.97438 * 15 14 13 17 17 N 1.34043 * 126.66947 * 179.68439 * 16 15 14 18 18 N 1.28988 * 107.26828 * 179.87223 * 17 16 15 19 19 N 1.28735 * 108.94132 * 0.39761 * 18 17 16 20 20 H 0.96997 * 125.34398 * 179.76936 * 19 18 17 21 21 N 1.28872 * 109.31827 * 359.74685 * 19 18 17 22 22 C 1.38005 * 119.94268 * 89.99661 * 11 10 9 23 23 C 1.46500 * 119.99933 * 218.10276 * 9 7 2 24 24 C 1.53001 * 117.50053 * 14.01396 * 23 9 7 25 25 C 1.53000 * 117.49970 * 305.35401 * 23 9 7 26 26 H 0.96998 * 119.99959 * 354.95985 * 1 2 3 27 27 H 1.08996 * 109.47079 * 329.99600 * 10 9 7 28 28 H 1.09004 * 109.47150 * 210.00421 * 10 9 7 29 29 H 1.07998 * 119.88399 * 359.97438 * 12 11 10 30 30 H 1.08005 * 119.94421 * 180.02562 * 13 12 11 31 31 H 1.08002 * 120.06060 * 180.27010 * 14 13 12 32 32 H 1.08002 * 120.06039 * 0.02562 * 22 11 10 33 33 H 1.09004 * 115.54940 * 159.68320 * 23 9 7 34 34 H 1.09004 * 117.49418 * 359.97438 * 24 23 9 35 35 H 1.08998 * 117.49958 * 145.01805 * 24 23 9 36 36 H 1.09001 * 117.49357 * 214.97772 * 25 23 9 37 37 H 1.08994 * 117.50010 * 359.97438 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2126 6 1 1.8914 2.3964 1.2124 7 6 2.0102 -1.2021 -0.0005 8 1 3.0390 -1.2318 0.3268 9 7 1.3906 -2.3503 -0.4162 10 6 0.4593 -2.3121 -1.5464 11 6 1.2141 -2.5552 -2.8278 12 6 1.7467 -1.4879 -3.5285 13 6 2.4410 -1.7040 -4.7048 14 6 2.6055 -2.9873 -5.1864 15 6 2.0704 -4.0654 -4.4855 16 6 2.2437 -5.4476 -4.9989 17 7 1.7919 -6.5748 -4.4315 18 7 2.1489 -7.5551 -5.1900 19 7 2.8064 -7.0887 -6.1938 20 1 3.1886 -7.6198 -6.9099 21 7 2.8768 -5.8055 -6.0982 22 6 1.3732 -3.8421 -3.3000 23 6 1.6591 -3.6169 0.2693 24 6 2.3674 -3.5508 1.6239 25 6 3.1188 -4.0589 0.3908 26 1 -0.4850 0.8368 0.0738 27 1 -0.0218 -1.3350 -1.5879 28 1 -0.2986 -3.0851 -1.4190 29 1 1.6200 -0.4824 -3.1556 30 1 2.8552 -0.8672 -5.2478 31 1 3.1516 -3.1553 -6.1029 32 1 0.9570 -4.6747 -2.7523 33 1 0.9076 -4.3944 0.1317 34 1 2.6340 -2.5649 2.0048 35 1 2.0822 -4.2850 2.3773 36 1 3.3275 -5.1272 0.3336 37 1 3.8793 -3.4075 -0.0396 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606349432.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:47 Heat of formation + Delta-G solvation = 197.728995 kcal Electronic energy + Delta-G solvation = -21857.337226 eV Core-core repulsion = 18639.275375 eV Total energy + Delta-G solvation = -3218.061850 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -44.35747 -38.84685 -36.87542 -34.36374 -33.87726 -33.17178 -31.56317 -30.20613 -29.51830 -25.72114 -24.55906 -24.22842 -23.52186 -21.54913 -21.30791 -20.39016 -19.79064 -19.05202 -17.05673 -16.68283 -15.92792 -15.48366 -15.10309 -14.55434 -14.39296 -14.04112 -13.67072 -13.25886 -13.10365 -12.60462 -12.37113 -12.25011 -11.80561 -11.29656 -11.26327 -11.16187 -11.00323 -10.94577 -10.79312 -10.65669 -10.54818 -10.38286 -10.15034 -9.99510 -9.60820 -9.28008 -8.50615 -8.31176 -8.07138 -6.51845 -5.89382 -3.44241 0.96744 1.38930 1.92845 2.27715 2.66822 3.28401 3.38710 3.42060 3.86592 4.28100 4.34765 4.42582 4.98969 5.27762 5.36065 5.37638 5.40961 5.47741 5.56228 5.83287 5.95116 5.95536 6.08880 6.16296 6.28753 6.32264 6.39966 6.54404 6.55873 6.63809 6.70363 6.85656 6.98622 7.03028 7.21281 7.29718 7.46844 7.59406 7.78115 8.23298 8.45605 9.09243 9.71078 10.29071 11.11725 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.020102 B = 0.005038 C = 0.004366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1392.557805 B = 5556.527971 C = 6412.288780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.018 3.982 3 Si 0.894 3.106 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.288 1.288 7 C -0.255 4.255 8 H 0.062 0.938 9 N -0.541 5.541 10 C 0.176 3.824 11 C -0.075 4.075 12 C -0.074 4.074 13 C -0.131 4.131 14 C -0.098 4.098 15 C -0.038 4.038 16 C 0.236 3.764 17 N -0.267 5.267 18 N -0.057 5.057 19 N -0.235 5.235 20 H 0.472 0.528 21 N -0.304 5.304 22 C -0.068 4.068 23 C 0.129 3.871 24 C -0.195 4.195 25 C -0.225 4.225 26 H 0.258 0.742 27 H 0.108 0.892 28 H 0.040 0.960 29 H 0.125 0.875 30 H 0.120 0.880 31 H 0.121 0.879 32 H 0.126 0.874 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.784 -8.802 -11.200 14.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.183 4.183 3 Si 0.723 3.277 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.215 1.215 7 C -0.385 4.385 8 H 0.079 0.921 9 N -0.256 5.256 10 C 0.050 3.950 11 C -0.078 4.078 12 C -0.093 4.093 13 C -0.149 4.149 14 C -0.119 4.119 15 C -0.042 4.042 16 C -0.043 4.043 17 N -0.140 5.140 18 N -0.052 5.052 19 N -0.081 5.081 20 H 0.325 0.675 21 N -0.156 5.156 22 C -0.089 4.089 23 C 0.020 3.980 24 C -0.234 4.234 25 C -0.266 4.266 26 H 0.068 0.932 27 H 0.126 0.874 28 H 0.058 0.942 29 H 0.143 0.857 30 H 0.138 0.862 31 H 0.139 0.861 32 H 0.144 0.856 33 H 0.107 0.893 34 H 0.116 0.884 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 3.540 -9.294 -11.215 14.990 hybrid contribution 1.042 0.904 -0.451 1.452 sum 4.582 -8.390 -11.667 15.083 Atomic orbital electron populations 1.69892 1.05531 1.26158 1.51102 1.25198 0.95047 0.98597 0.99466 0.86360 0.79929 0.83837 0.77577 1.19960 1.21144 1.21488 1.18966 0.94195 0.84746 1.40598 0.92052 1.43309 1.50684 1.02572 1.29041 1.20088 0.89947 1.03654 0.81264 1.21194 0.97979 0.91495 0.97104 1.21325 0.94978 0.99886 0.93161 1.21016 1.00577 0.96080 0.97254 1.20888 0.99689 0.91822 0.99495 1.17201 1.04533 0.85014 0.97408 1.23905 0.95502 0.95936 0.88935 1.76120 1.20253 0.95770 1.21906 1.78881 1.08074 1.22963 0.95323 1.47688 1.36202 1.03948 1.20221 0.67490 1.74929 1.23607 0.95135 1.21901 1.21060 0.96787 0.97587 0.93502 1.21125 0.91519 0.90488 0.94906 1.23082 1.06806 1.02016 0.91510 1.23335 0.99921 0.98961 1.04394 0.93192 0.87438 0.94175 0.85673 0.86212 0.86149 0.85607 0.89320 0.88355 0.90828 0.91006 0.89858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.79 11.45 55.49 0.64 -23.16 16 2 C 0.02 0.45 4.97 -17.43 -0.09 0.37 16 3 Si 0.89 20.45 29.60 -169.99 -5.03 15.41 16 4 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 6 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.26 -6.55 8.04 -15.06 -0.12 -6.67 16 8 H 0.06 1.63 7.23 -52.49 -0.38 1.25 16 9 N -0.54 -12.77 2.76 -167.03 -0.46 -13.23 16 10 C 0.18 3.88 5.45 -5.20 -0.03 3.85 16 11 C -0.07 -1.46 5.46 -104.68 -0.57 -2.03 16 12 C -0.07 -1.37 9.69 -39.53 -0.38 -1.75 16 13 C -0.13 -2.07 10.03 -39.63 -0.40 -2.47 16 14 C -0.10 -1.51 9.70 -39.26 -0.38 -1.89 16 15 C -0.04 -0.63 5.88 -104.89 -0.62 -1.25 16 16 C 0.24 3.72 7.94 -156.31 -1.24 2.48 16 17 N -0.27 -4.28 12.23 32.16 0.39 -3.89 16 18 N -0.06 -0.75 13.47 60.35 0.81 0.06 16 19 N -0.24 -2.40 7.90 60.35 0.48 -1.93 16 20 H 0.47 2.28 8.96 -340.37 -3.05 -0.77 16 21 N -0.30 -4.02 12.08 32.17 0.39 -3.63 16 22 C -0.07 -1.23 9.35 -39.26 -0.37 -1.60 16 23 C 0.13 2.74 6.61 -67.93 -0.45 2.29 16 24 C -0.20 -3.93 9.81 -26.69 -0.26 -4.19 16 25 C -0.23 -4.44 10.09 -26.69 -0.27 -4.71 16 26 H 0.26 6.70 8.32 -40.82 -0.34 6.36 16 27 H 0.11 2.64 5.46 -51.93 -0.28 2.35 16 28 H 0.04 0.84 7.98 -51.93 -0.41 0.42 16 29 H 0.13 2.44 8.06 -52.49 -0.42 2.02 16 30 H 0.12 1.57 8.06 -52.48 -0.42 1.15 16 31 H 0.12 1.61 7.88 -52.49 -0.41 1.20 16 32 H 0.13 2.24 7.89 -52.49 -0.41 1.83 16 33 H 0.09 1.76 8.10 -51.93 -0.42 1.33 16 34 H 0.10 2.17 6.96 -51.93 -0.36 1.81 16 35 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 37 H 0.08 1.77 8.00 -51.93 -0.42 1.35 16 LS Contribution 323.03 15.07 4.87 4.87 Total: -1.00 -29.18 323.03 -10.07 -39.26 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -6.98 Total: 3.81 kcal Atomic # 6 Polarization: -12.40 SS G_CDS: -5.17 Total: -17.57 kcal Atomic # 7 Polarization: -48.02 SS G_CDS: 2.25 Total: -45.78 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.03 Total: 15.41 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.18 -10.07 -39.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606349432.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 236.984 kcal (2) G-P(sol) polarization free energy of solvation -29.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 207.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 197.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds