Wall clock time and date at job start Tue Mar 31 2020 05:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86796 * 119.99911 * 2 1 4 4 H 1.48497 * 109.47078 * 270.00174 * 3 2 1 5 5 H 1.48499 * 109.46905 * 30.00354 * 3 2 1 6 6 H 1.48506 * 109.46893 * 150.00105 * 3 2 1 7 7 C 1.38817 * 119.99617 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00333 * 359.97438 * 7 2 1 9 9 N 1.36942 * 119.99433 * 179.97438 * 7 2 1 10 10 C 1.46496 * 119.99805 * 184.28119 * 9 7 2 11 11 C 1.50704 * 112.84964 * 294.15225 * 10 9 7 12 12 C 1.38312 * 119.88073 * 345.05581 * 11 10 9 13 13 C 1.38024 * 120.11738 * 180.02562 * 12 11 10 14 14 C 1.39306 * 119.88090 * 0.02562 * 13 12 11 15 15 C 1.48458 * 120.11602 * 179.97438 * 14 13 12 16 16 N 1.34044 * 126.67756 * 359.97438 * 15 14 13 17 17 N 1.28990 * 107.27269 * 180.02562 * 16 15 14 18 18 N 1.28732 * 108.94109 * 359.97438 * 17 16 15 19 19 H 0.96997 * 125.34192 * 180.02562 * 18 17 16 20 20 N 1.28877 * 109.31661 * 359.97438 * 18 17 16 21 21 C 1.39302 * 119.76603 * 0.27666 * 14 13 12 22 22 C 1.38029 * 119.87807 * 359.44632 * 21 14 13 23 23 C 1.53781 * 113.69050 * 65.42114 * 10 9 7 24 24 C 1.53780 * 87.08205 * 89.12899 * 23 10 9 25 25 C 1.53779 * 87.08171 * 25.43255 * 24 23 10 26 26 H 0.96997 * 120.00128 * 359.97438 * 1 2 3 27 27 H 0.97001 * 120.00476 * 4.28155 * 9 7 2 28 28 H 1.08000 * 119.93973 * 0.04241 * 12 11 10 29 29 H 1.07998 * 120.06106 * 179.97438 * 13 12 11 30 30 H 1.08002 * 120.06066 * 179.72753 * 21 14 13 31 31 H 1.07996 * 119.94065 * 180.27880 * 22 21 14 32 32 H 1.09000 * 113.61483 * 203.67282 * 23 10 9 33 33 H 1.08997 * 113.61484 * 334.57715 * 23 10 9 34 34 H 1.09006 * 113.61297 * 270.88382 * 24 23 10 35 35 H 1.08999 * 113.69395 * 139.99091 * 24 23 10 36 36 H 1.09003 * 113.61295 * 220.02565 * 25 24 23 37 37 H 1.08997 * 113.69257 * 89.13299 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4976 2.0464 -1.4000 5 1 1.4475 2.6526 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2022 -0.0011 10 6 4.1120 -2.4673 -0.0963 11 6 3.9130 -3.3509 1.1082 12 6 3.3733 -2.8241 2.2676 13 6 3.1894 -3.6288 3.3738 14 6 3.5489 -4.9736 3.3212 15 6 3.3538 -5.8437 4.5082 16 7 2.8464 -5.4786 5.6939 17 7 2.8475 -6.5241 6.4493 18 7 3.3303 -7.5172 5.7876 19 1 3.4392 -8.4188 6.1285 20 7 3.6452 -7.1259 4.6007 21 6 4.0979 -5.4976 2.1531 22 6 4.2722 -4.6854 1.0507 23 6 3.9132 -3.1971 -1.4353 24 6 5.1184 -2.3987 -1.9595 25 6 5.5866 -2.2967 -0.4983 26 1 -0.4850 0.8400 0.0004 27 1 3.8647 -0.3645 0.0616 28 1 3.0950 -1.7813 2.3072 29 1 2.7682 -3.2164 4.2787 30 1 4.3824 -6.5385 2.1085 31 1 4.6935 -5.0916 0.1431 32 1 4.0923 -4.2708 -1.3782 33 1 2.9755 -2.9492 -1.9326 34 1 4.8482 -1.4386 -2.3994 35 1 5.7876 -2.9811 -2.5928 36 1 5.9997 -1.3219 -0.2392 37 1 6.2234 -3.1235 -0.1837 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606350229.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:21 Heat of formation + Delta-G solvation = 169.776305 kcal Electronic energy + Delta-G solvation = -21721.308787 eV Core-core repulsion = 18502.034817 eV Total energy + Delta-G solvation = -3219.273970 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -45.43650 -41.12595 -38.95719 -35.37693 -35.31519 -34.50685 -32.72162 -31.74381 -31.30205 -27.02613 -26.48851 -25.69994 -25.18579 -23.81319 -23.14855 -21.98262 -20.22878 -19.80236 -19.45625 -18.11916 -17.99967 -16.95982 -16.27028 -16.17666 -15.60442 -15.52303 -15.02420 -14.77819 -14.59400 -14.26253 -14.05125 -13.60447 -13.42043 -13.12456 -12.97428 -12.80587 -12.68358 -12.37169 -12.27005 -12.12918 -11.87226 -11.80860 -11.75312 -11.51916 -11.40599 -11.02458 -10.78605 -9.77356 -9.39525 -9.17391 -7.95465 -5.29542 -0.21849 0.21085 0.58965 1.37870 1.40162 1.42860 1.45471 1.49729 2.52378 2.70991 2.93323 3.20681 3.34920 3.50167 3.86659 4.00734 4.02246 4.15029 4.18988 4.27908 4.32873 4.45048 4.55400 4.70351 4.77435 4.95462 4.98707 5.05384 5.17890 5.23954 5.38164 5.41133 5.50947 5.55206 5.64132 5.69619 5.86524 5.98321 6.09967 6.29547 7.13747 7.14676 7.90242 8.08136 9.26248 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.019155 B = 0.004665 C = 0.003991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1461.423472 B = 6001.026582 C = 7014.337440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.062 4.062 3 Si 0.946 3.054 4 H -0.281 1.281 5 H -0.303 1.303 6 H -0.250 1.250 7 C -0.203 4.203 8 H 0.054 0.946 9 N -0.728 5.728 10 C 0.195 3.805 11 C -0.057 4.057 12 C -0.109 4.109 13 C -0.089 4.089 14 C -0.046 4.046 15 C 0.217 3.783 16 N -0.302 5.302 17 N -0.059 5.059 18 N -0.199 5.199 19 H 0.495 0.505 20 N -0.291 5.291 21 C -0.076 4.076 22 C -0.118 4.118 23 C -0.148 4.148 24 C -0.123 4.123 25 C -0.122 4.122 26 H 0.254 0.746 27 H 0.368 0.632 28 H 0.112 0.888 29 H 0.122 0.878 30 H 0.153 0.847 31 H 0.158 0.842 32 H 0.104 0.896 33 H 0.040 0.960 34 H 0.062 0.938 35 H 0.092 0.908 36 H 0.066 0.934 37 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.756 -15.579 5.203 22.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.253 4.253 3 Si 0.775 3.225 4 H -0.208 1.208 5 H -0.231 1.231 6 H -0.175 1.175 7 C -0.334 4.334 8 H 0.072 0.928 9 N -0.369 5.369 10 C 0.104 3.896 11 C -0.060 4.060 12 C -0.128 4.128 13 C -0.109 4.109 14 C -0.049 4.049 15 C -0.062 4.062 16 N -0.174 5.174 17 N -0.054 5.054 18 N -0.050 5.050 19 H 0.354 0.646 20 N -0.144 5.144 21 C -0.096 4.096 22 C -0.136 4.136 23 C -0.187 4.187 24 C -0.160 4.160 25 C -0.160 4.160 26 H 0.063 0.937 27 H 0.202 0.798 28 H 0.130 0.870 29 H 0.141 0.859 30 H 0.170 0.830 31 H 0.175 0.825 32 H 0.122 0.878 33 H 0.059 0.941 34 H 0.081 0.919 35 H 0.110 0.890 36 H 0.085 0.915 37 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 14.361 -15.782 5.845 22.124 hybrid contribution -0.443 1.117 0.057 1.202 sum 13.918 -14.665 5.902 21.062 Atomic orbital electron populations 1.69877 1.07151 1.26271 1.60331 1.25366 0.95845 1.00728 1.03313 0.85537 0.78737 0.80396 0.77859 1.20774 1.23050 1.17505 1.18736 0.82073 0.92877 1.39664 0.92795 1.42408 1.02378 1.03278 1.88880 1.19859 0.93506 0.85644 0.90583 1.20836 0.94836 0.95052 0.95283 1.21060 0.98475 1.00466 0.92767 1.21138 0.98408 0.92592 0.98812 1.17296 1.05962 0.91434 0.90204 1.23779 0.98980 0.88892 0.94561 1.76107 1.19290 1.19872 1.02155 1.78831 1.13698 0.91478 1.21376 1.47764 1.37238 1.14610 1.05430 0.64614 1.74867 1.22523 1.13263 1.03756 1.21249 0.96816 1.00755 0.90771 1.21163 1.01210 0.91973 0.99274 1.23451 0.98591 0.99908 0.96734 1.22640 0.97136 1.00146 0.96104 1.23212 0.93387 1.03148 0.96252 0.93670 0.79825 0.86967 0.85949 0.82965 0.82458 0.87781 0.94084 0.91937 0.88952 0.91515 0.86850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.03 13.97 21.65 0.30 -62.72 16 2 C -0.06 -3.56 5.50 84.86 0.47 -3.09 16 3 Si 0.95 44.98 27.78 68.60 1.91 46.89 16 4 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 5 H -0.30 -14.93 7.11 99.48 0.71 -14.22 16 6 H -0.25 -10.63 6.46 99.48 0.64 -9.99 16 7 C -0.20 -11.03 8.59 84.03 0.72 -10.31 16 8 H 0.05 3.32 8.06 -2.91 -0.02 3.29 16 9 N -0.73 -31.88 4.12 -304.34 -1.25 -33.13 16 10 C 0.19 6.74 1.20 3.39 0.00 6.75 16 11 C -0.06 -1.93 5.12 -19.83 -0.10 -2.03 16 12 C -0.11 -4.19 8.91 22.24 0.20 -3.99 16 13 C -0.09 -3.11 9.70 22.48 0.22 -2.89 16 14 C -0.05 -1.39 5.88 -20.04 -0.12 -1.51 16 15 C 0.22 6.23 7.94 137.38 1.09 7.32 16 16 N -0.30 -9.14 12.23 -52.18 -0.64 -9.78 16 17 N -0.06 -1.40 13.47 37.02 0.50 -0.91 16 18 N -0.20 -3.33 7.90 37.02 0.29 -3.03 16 19 H 0.49 2.67 8.96 -347.54 -3.12 -0.44 16 20 N -0.29 -6.53 12.08 -52.13 -0.63 -7.16 16 21 C -0.08 -1.96 9.70 22.48 0.22 -1.74 16 22 C -0.12 -3.14 8.78 22.24 0.20 -2.94 16 23 C -0.15 -4.62 7.09 31.12 0.22 -4.40 16 24 C -0.12 -3.20 7.99 31.12 0.25 -2.95 16 25 C -0.12 -3.17 7.29 31.12 0.23 -2.94 16 26 H 0.25 15.66 8.31 -92.71 -0.77 14.89 16 27 H 0.37 15.67 5.70 -92.71 -0.53 15.14 16 28 H 0.11 4.95 6.72 -2.91 -0.02 4.93 16 29 H 0.12 4.26 7.89 -2.91 -0.02 4.24 16 30 H 0.15 3.07 7.88 -2.91 -0.02 3.04 16 31 H 0.16 3.11 6.42 -2.91 -0.02 3.10 16 32 H 0.10 2.58 6.12 -2.39 -0.01 2.57 16 33 H 0.04 1.59 7.85 -2.39 -0.02 1.57 16 34 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 35 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.07 1.73 8.09 -2.39 -0.02 1.71 16 37 H 0.11 2.28 7.84 -2.39 -0.02 2.26 16 Total: -1.00 -72.77 312.03 1.49 -71.28 By element: Atomic # 1 Polarization: 25.87 SS G_CDS: -2.58 Total: 23.30 kcal Atomic # 6 Polarization: -28.31 SS G_CDS: 3.59 Total: -24.72 kcal Atomic # 7 Polarization: -115.31 SS G_CDS: -1.43 Total: -116.74 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 1.91 Total: 46.89 kcal Total: -72.77 1.49 -71.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606350229.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 241.054 kcal (2) G-P(sol) polarization free energy of solvation -72.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 168.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 169.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds