Wall clock time and date at job start Tue Mar 31 2020 06:10:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42895 * 113.99518 * 2 1 4 4 C 1.50701 * 110.01939 * 296.86837 * 3 2 1 5 5 O 1.21298 * 119.99954 * 125.02531 * 4 3 2 6 6 N 1.34774 * 120.00151 * 305.03342 * 4 3 2 7 7 C 1.37095 * 120.00056 * 176.38045 * 6 4 3 8 8 H 1.08000 * 119.99972 * 215.37323 * 7 6 4 9 9 C 1.38953 * 120.00109 * 35.36847 * 7 6 4 10 10 N 1.31410 * 119.99909 * 24.67174 * 9 7 6 11 11 Si 1.86807 * 120.00138 * 204.66539 * 9 7 6 12 12 H 1.48502 * 109.46761 * 95.00172 * 11 9 7 13 13 H 1.48504 * 109.46918 * 215.00021 * 11 9 7 14 14 H 1.48497 * 109.47013 * 335.00334 * 11 9 7 15 15 C 1.46494 * 120.00203 * 356.37393 * 6 4 3 16 16 C 1.53001 * 109.47291 * 90.00355 * 15 6 4 17 17 C 1.50693 * 109.47093 * 180.02562 * 16 15 6 18 18 O 1.20828 * 120.00562 * 359.97438 * 17 16 15 19 19 O 1.34228 * 119.99890 * 180.02562 * 17 16 15 20 20 C 1.54266 * 110.03490 * 58.26579 * 3 2 1 21 21 C 1.54956 * 104.15994 * 95.75234 * 20 3 2 22 22 C 1.54889 * 102.78126 * 37.88870 * 21 20 3 23 23 C 1.53875 * 110.02887 * 175.48193 * 3 2 1 24 24 H 1.08998 * 109.47901 * 63.07139 * 1 2 3 25 25 H 1.09006 * 109.46803 * 183.07272 * 1 2 3 26 26 H 1.09001 * 109.47201 * 303.06749 * 1 2 3 27 27 H 0.97003 * 119.99866 * 184.96861 * 10 9 7 28 28 H 1.09005 * 109.46861 * 330.00112 * 15 6 4 29 29 H 1.08998 * 109.47570 * 210.00835 * 15 6 4 30 30 H 1.09000 * 109.46831 * 300.00039 * 16 15 6 31 31 H 1.08999 * 109.46976 * 60.00207 * 16 15 6 32 32 H 0.96707 * 117.00298 * 179.97438 * 19 17 16 33 33 H 1.09006 * 110.48398 * 214.40446 * 20 3 2 34 34 H 1.08997 * 110.48403 * 337.03767 * 20 3 2 35 35 H 1.08997 * 110.72120 * 279.57245 * 21 20 3 36 36 H 1.09010 * 110.76521 * 156.22542 * 21 20 3 37 37 H 1.08998 * 110.48963 * 203.40544 * 22 21 20 38 38 H 1.09002 * 110.48622 * 80.75934 * 22 21 20 39 39 H 1.08991 * 110.03408 * 359.94948 * 23 3 2 40 40 H 1.09007 * 110.02925 * 121.38241 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 1.6353 2.0370 -1.2631 5 8 1.0990 3.1231 -1.1985 6 7 1.8958 1.4845 -2.4645 7 6 1.4886 2.1149 -3.6117 8 1 1.1584 1.5330 -4.4596 9 6 1.5005 3.5025 -3.6837 10 7 2.3113 4.1934 -2.9142 11 14 0.3640 4.3859 -4.8744 12 1 -0.8787 4.7869 -4.1673 13 1 1.0447 5.5951 -5.4036 14 1 0.0227 3.4779 -5.9988 15 6 2.6143 0.2104 -2.5444 16 6 1.6103 -0.9439 -2.5175 17 6 2.3494 -2.2545 -2.5991 18 8 3.5555 -2.2646 -2.6719 19 8 1.6679 -3.4109 -2.5920 20 6 1.5286 2.0983 1.2326 21 6 2.6542 1.8943 2.2779 22 6 3.9376 1.9344 1.4118 23 6 3.5411 1.2009 0.1139 24 1 -0.3635 0.4654 -0.9162 25 1 -0.3633 -1.0263 0.0551 26 1 -0.3634 0.5607 0.8612 27 1 2.2693 5.1626 -2.9118 28 1 3.2926 0.1219 -1.6957 29 1 3.1860 0.1731 -3.4717 30 1 1.0387 -0.9066 -1.5901 31 1 0.9321 -0.8553 -3.3662 32 1 2.1856 -4.2260 -2.6466 33 1 1.4218 3.1553 0.9885 34 1 0.5861 1.6941 1.6018 35 1 2.5514 0.9280 2.7717 36 1 2.6552 2.7040 3.0078 37 1 4.7522 1.4109 1.9122 38 1 4.2204 2.9648 1.1964 39 1 3.8407 0.1544 0.1700 40 1 4.0129 1.6793 -0.7445 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606687432.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:18 Heat of formation + Delta-G solvation = -147.542461 kcal Electronic energy + Delta-G solvation = -25078.829883 eV Core-core repulsion = 21473.901517 eV Total energy + Delta-G solvation = -3604.928366 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -40.22027 -39.60907 -36.94831 -35.92023 -35.46505 -34.39319 -32.15229 -30.07946 -28.79417 -27.86480 -25.96545 -24.93246 -23.91778 -21.26752 -20.42989 -20.20002 -18.85337 -17.87678 -17.22905 -16.56357 -15.88930 -15.80496 -15.29374 -15.05407 -14.59802 -14.23812 -14.08706 -13.85947 -13.35748 -12.84407 -12.76648 -12.56415 -12.44176 -11.91176 -11.49908 -11.31890 -11.27739 -11.20322 -11.06930 -10.87106 -10.84730 -10.57297 -10.50210 -10.34625 -10.23044 -10.17686 -10.13749 -9.97694 -9.42706 -8.82201 -7.90164 -7.09659 -6.09570 -3.82500 2.56824 3.33453 3.34869 3.41600 3.43334 3.92213 4.33534 4.37026 4.86518 5.00127 5.11202 5.28473 5.37938 5.52969 5.56981 5.68257 5.69411 5.74543 5.90060 5.90578 6.02233 6.02612 6.08808 6.15342 6.18705 6.24299 6.32077 6.36696 6.51775 6.57337 6.66357 6.70323 6.78794 6.87523 7.51001 7.63652 8.18207 8.22594 9.02103 9.14690 9.65460 10.26746 10.96005 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.012438 B = 0.008968 C = 0.006192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.626442 B = 3121.290869 C = 4521.053853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.373 6.373 3 C 0.101 3.899 4 C 0.444 3.556 5 O -0.521 6.521 6 N -0.440 5.440 7 C -0.355 4.355 8 H 0.082 0.918 9 C 0.071 3.929 10 N -0.808 5.808 11 Si 0.902 3.098 12 H -0.280 1.280 13 H -0.289 1.289 14 H -0.274 1.274 15 C 0.119 3.881 16 C -0.146 4.146 17 C 0.486 3.514 18 O -0.523 6.523 19 O -0.524 6.524 20 C -0.139 4.139 21 C -0.119 4.119 22 C -0.121 4.121 23 C -0.110 4.110 24 H 0.052 0.948 25 H 0.082 0.918 26 H 0.047 0.953 27 H 0.263 0.737 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.131 0.869 31 H 0.099 0.901 32 H 0.401 0.599 33 H 0.094 0.906 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.806 -9.867 6.577 11.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.293 6.293 3 C 0.058 3.942 4 C 0.230 3.770 5 O -0.398 6.398 6 N -0.161 5.161 7 C -0.481 4.481 8 H 0.100 0.900 9 C -0.141 4.141 10 N -0.442 5.442 11 Si 0.729 3.271 12 H -0.206 1.206 13 H -0.215 1.215 14 H -0.199 1.199 15 C -0.006 4.006 16 C -0.184 4.184 17 C 0.329 3.671 18 O -0.411 6.411 19 O -0.335 6.335 20 C -0.177 4.177 21 C -0.157 4.157 22 C -0.158 4.158 23 C -0.147 4.147 24 H 0.070 0.930 25 H 0.100 0.900 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.148 0.852 31 H 0.117 0.883 32 H 0.259 0.741 33 H 0.113 0.887 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.745 -8.902 6.604 11.109 hybrid contribution -0.352 0.012 -0.678 0.764 sum -1.097 -8.890 5.926 10.740 Atomic orbital electron populations 1.22802 0.81885 1.01844 1.01349 1.87896 1.19405 1.27469 1.94481 1.22444 0.94135 0.82774 0.94804 1.20120 0.84960 0.87834 0.84051 1.90530 1.43581 1.20286 1.85378 1.43276 1.49784 1.17911 1.05158 1.19105 1.45704 0.89783 0.93557 0.90031 1.24993 0.95299 0.96885 0.96878 1.69984 1.30388 1.07005 1.36847 0.86350 0.81310 0.79073 0.80340 1.20595 1.21476 1.19883 1.21358 0.92681 0.83598 1.02974 1.22435 1.01204 0.87712 1.07090 1.23840 0.86668 0.85847 0.70770 1.90677 1.16209 1.88006 1.46215 1.84592 1.45753 1.17296 1.85857 1.22849 0.98005 1.02817 0.94015 1.22452 0.95047 1.00929 0.97272 1.22340 0.97331 1.00787 0.95358 1.22236 0.92391 1.01235 0.98846 0.92969 0.89978 0.93492 0.92676 0.90527 0.91066 0.85208 0.88280 0.74139 0.88723 0.91324 0.91816 0.91895 0.91818 0.91303 0.90568 0.89884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 8.63 101.05 0.87 1.14 16 2 O -0.37 -6.52 7.19 -35.23 -0.25 -6.77 16 3 C 0.10 1.96 0.53 -90.65 -0.05 1.91 16 4 C 0.44 10.81 4.70 -10.99 -0.05 10.76 16 5 O -0.52 -14.70 12.32 5.54 0.07 -14.64 16 6 N -0.44 -10.73 2.56 -114.81 -0.29 -11.03 16 7 C -0.36 -9.54 9.34 -14.93 -0.14 -9.68 16 8 H 0.08 2.10 7.94 -52.49 -0.42 1.68 16 9 C 0.07 1.98 4.20 -17.47 -0.07 1.91 16 10 N -0.81 -23.64 11.25 55.50 0.62 -23.02 16 11 Si 0.90 21.63 29.62 -169.99 -5.04 16.60 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 13 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 14 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 15 C 0.12 2.45 4.06 -4.04 -0.02 2.43 16 16 C -0.15 -2.52 5.79 -27.89 -0.16 -2.68 16 17 C 0.49 7.75 8.33 36.00 0.30 8.05 16 18 O -0.52 -9.64 16.74 -18.75 -0.31 -9.95 16 19 O -0.52 -6.51 13.42 -39.25 -0.53 -7.04 16 20 C -0.14 -2.48 5.70 -25.04 -0.14 -2.62 16 21 C -0.12 -1.76 6.91 -24.70 -0.17 -1.93 16 22 C -0.12 -1.87 6.83 -25.07 -0.17 -2.04 16 23 C -0.11 -1.99 4.35 -25.61 -0.11 -2.10 16 24 H 0.05 0.92 7.22 -51.93 -0.38 0.55 16 25 H 0.08 1.01 8.13 -51.93 -0.42 0.59 16 26 H 0.05 0.68 5.86 -51.93 -0.30 0.38 16 27 H 0.26 7.44 8.32 -40.82 -0.34 7.10 16 28 H 0.08 1.55 4.16 -51.93 -0.22 1.33 16 29 H 0.07 1.52 8.00 -51.93 -0.42 1.11 16 30 H 0.13 2.19 3.23 -51.93 -0.17 2.02 16 31 H 0.10 1.68 8.14 -51.93 -0.42 1.25 16 32 H 0.40 3.12 9.10 45.56 0.41 3.53 16 33 H 0.09 1.95 6.83 -51.93 -0.35 1.60 16 34 H 0.07 1.12 5.66 -51.93 -0.29 0.83 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.06 0.83 8.14 -51.92 -0.42 0.41 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 39 H 0.08 1.29 7.46 -51.93 -0.39 0.90 16 40 H 0.08 1.71 7.11 -51.93 -0.37 1.34 16 LS Contribution 313.54 15.07 4.72 4.72 Total: -1.00 -33.15 313.54 -5.48 -38.63 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -4.56 Total: 7.34 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: 0.09 Total: 5.16 kcal Atomic # 7 Polarization: -34.38 SS G_CDS: 0.33 Total: -34.04 kcal Atomic # 8 Polarization: -37.38 SS G_CDS: -1.03 Total: -38.40 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.04 Total: 16.60 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -33.15 -5.48 -38.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606687432.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.916 kcal (2) G-P(sol) polarization free energy of solvation -33.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds