Wall clock time and date at job start Tue Mar 31 2020 06:10:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42895 * 113.99518 * 2 1 4 4 C 1.50701 * 110.01939 * 296.86837 * 3 2 1 5 5 O 1.21298 * 119.99954 * 125.02531 * 4 3 2 6 6 N 1.34774 * 120.00151 * 305.03342 * 4 3 2 7 7 C 1.37095 * 120.00056 * 176.38045 * 6 4 3 8 8 H 1.08000 * 119.99972 * 215.37323 * 7 6 4 9 9 C 1.38953 * 120.00109 * 35.36847 * 7 6 4 10 10 N 1.31410 * 119.99909 * 24.67174 * 9 7 6 11 11 Si 1.86807 * 120.00138 * 204.66539 * 9 7 6 12 12 H 1.48502 * 109.46761 * 95.00172 * 11 9 7 13 13 H 1.48504 * 109.46918 * 215.00021 * 11 9 7 14 14 H 1.48497 * 109.47013 * 335.00334 * 11 9 7 15 15 C 1.46494 * 120.00203 * 356.37393 * 6 4 3 16 16 C 1.53001 * 109.47291 * 90.00355 * 15 6 4 17 17 C 1.50693 * 109.47093 * 180.02562 * 16 15 6 18 18 O 1.20828 * 120.00562 * 359.97438 * 17 16 15 19 19 O 1.34228 * 119.99890 * 180.02562 * 17 16 15 20 20 C 1.54266 * 110.03490 * 58.26579 * 3 2 1 21 21 C 1.54956 * 104.15994 * 95.75234 * 20 3 2 22 22 C 1.54889 * 102.78126 * 37.88870 * 21 20 3 23 23 C 1.53875 * 110.02887 * 175.48193 * 3 2 1 24 24 H 1.08998 * 109.47901 * 63.07139 * 1 2 3 25 25 H 1.09006 * 109.46803 * 183.07272 * 1 2 3 26 26 H 1.09001 * 109.47201 * 303.06749 * 1 2 3 27 27 H 0.97003 * 119.99866 * 184.96861 * 10 9 7 28 28 H 1.09005 * 109.46861 * 330.00112 * 15 6 4 29 29 H 1.08998 * 109.47570 * 210.00835 * 15 6 4 30 30 H 1.09000 * 109.46831 * 300.00039 * 16 15 6 31 31 H 1.08999 * 109.46976 * 60.00207 * 16 15 6 32 32 H 0.96707 * 117.00298 * 179.97438 * 19 17 16 33 33 H 1.09006 * 110.48398 * 214.40446 * 20 3 2 34 34 H 1.08997 * 110.48403 * 337.03767 * 20 3 2 35 35 H 1.08997 * 110.72120 * 279.57245 * 21 20 3 36 36 H 1.09010 * 110.76521 * 156.22542 * 21 20 3 37 37 H 1.08998 * 110.48963 * 203.40544 * 22 21 20 38 38 H 1.09002 * 110.48622 * 80.75934 * 22 21 20 39 39 H 1.08991 * 110.03408 * 359.94948 * 23 3 2 40 40 H 1.09007 * 110.02925 * 121.38241 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 1.6353 2.0370 -1.2631 5 8 1.0990 3.1231 -1.1985 6 7 1.8958 1.4845 -2.4645 7 6 1.4886 2.1149 -3.6117 8 1 1.1584 1.5330 -4.4596 9 6 1.5005 3.5025 -3.6837 10 7 2.3113 4.1934 -2.9142 11 14 0.3640 4.3859 -4.8744 12 1 -0.8787 4.7869 -4.1673 13 1 1.0447 5.5951 -5.4036 14 1 0.0227 3.4779 -5.9988 15 6 2.6143 0.2104 -2.5444 16 6 1.6103 -0.9439 -2.5175 17 6 2.3494 -2.2545 -2.5991 18 8 3.5555 -2.2646 -2.6719 19 8 1.6679 -3.4109 -2.5920 20 6 1.5286 2.0983 1.2326 21 6 2.6542 1.8943 2.2779 22 6 3.9376 1.9344 1.4118 23 6 3.5411 1.2009 0.1139 24 1 -0.3635 0.4654 -0.9162 25 1 -0.3633 -1.0263 0.0551 26 1 -0.3634 0.5607 0.8612 27 1 2.2693 5.1626 -2.9118 28 1 3.2926 0.1219 -1.6957 29 1 3.1860 0.1731 -3.4717 30 1 1.0387 -0.9066 -1.5901 31 1 0.9321 -0.8553 -3.3662 32 1 2.1856 -4.2260 -2.6466 33 1 1.4218 3.1553 0.9885 34 1 0.5861 1.6941 1.6018 35 1 2.5514 0.9280 2.7717 36 1 2.6552 2.7040 3.0078 37 1 4.7522 1.4109 1.9122 38 1 4.2204 2.9648 1.1964 39 1 3.8407 0.1544 0.1700 40 1 4.0129 1.6793 -0.7445 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606687432.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:15 Heat of formation + Delta-G solvation = -170.857939 kcal Electronic energy + Delta-G solvation = -25079.840918 eV Core-core repulsion = 21473.901517 eV Total energy + Delta-G solvation = -3605.939401 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.73673 -40.95867 -38.65923 -37.17655 -36.83494 -36.15625 -34.13368 -31.72094 -30.24816 -29.30824 -27.35032 -26.73500 -25.54914 -22.83694 -21.77782 -21.62659 -20.51550 -19.14896 -18.91637 -18.08635 -17.44496 -17.16184 -16.81914 -16.57071 -16.37810 -15.76882 -15.58767 -15.44392 -14.98089 -14.41373 -14.19893 -14.05258 -13.91090 -13.50837 -13.26083 -12.87391 -12.83223 -12.74158 -12.54884 -12.47392 -12.44595 -12.16017 -12.07626 -11.89512 -11.73922 -11.62362 -11.53295 -11.39646 -11.01039 -10.71779 -9.79661 -9.10625 -8.18451 -5.93933 1.29665 1.39113 1.45230 1.51358 2.11423 2.21952 2.44616 2.82692 3.10734 3.27114 3.60232 3.72242 4.03193 4.06821 4.10785 4.28221 4.33418 4.48470 4.54765 4.56466 4.64310 4.72013 4.75385 4.80110 4.83207 4.88669 4.92541 5.00879 5.15360 5.18295 5.21585 5.31043 5.47335 5.48231 5.68105 6.04004 6.22126 7.00029 7.08940 7.18795 7.67799 8.33996 8.86631 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.012438 B = 0.008968 C = 0.006192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.626442 B = 3121.290869 C = 4521.053853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.368 6.368 3 C 0.107 3.893 4 C 0.439 3.561 5 O -0.568 6.568 6 N -0.454 5.454 7 C -0.369 4.369 8 H 0.087 0.913 9 C 0.021 3.979 10 N -0.848 5.848 11 Si 0.963 3.037 12 H -0.291 1.291 13 H -0.286 1.286 14 H -0.254 1.254 15 C 0.120 3.880 16 C -0.139 4.139 17 C 0.499 3.501 18 O -0.550 6.550 19 O -0.509 6.509 20 C -0.140 4.140 21 C -0.107 4.107 22 C -0.118 4.118 23 C -0.108 4.108 24 H 0.024 0.976 25 H 0.121 0.879 26 H 0.057 0.943 27 H 0.257 0.743 28 H 0.080 0.920 29 H 0.055 0.945 30 H 0.138 0.862 31 H 0.102 0.898 32 H 0.426 0.574 33 H 0.058 0.942 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.096 0.904 38 H 0.052 0.948 39 H 0.092 0.908 40 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.318 -12.279 7.780 14.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.287 6.287 3 C 0.065 3.935 4 C 0.226 3.774 5 O -0.448 6.448 6 N -0.174 5.174 7 C -0.496 4.496 8 H 0.105 0.895 9 C -0.186 4.186 10 N -0.483 5.483 11 Si 0.788 3.212 12 H -0.218 1.218 13 H -0.212 1.212 14 H -0.177 1.177 15 C -0.004 4.004 16 C -0.177 4.177 17 C 0.343 3.657 18 O -0.441 6.441 19 O -0.323 6.323 20 C -0.178 4.178 21 C -0.144 4.144 22 C -0.155 4.155 23 C -0.146 4.146 24 H 0.043 0.957 25 H 0.139 0.861 26 H 0.076 0.924 27 H 0.066 0.934 28 H 0.098 0.902 29 H 0.074 0.926 30 H 0.156 0.844 31 H 0.120 0.880 32 H 0.288 0.712 33 H 0.077 0.923 34 H 0.102 0.898 35 H 0.107 0.893 36 H 0.099 0.901 37 H 0.114 0.886 38 H 0.071 0.929 39 H 0.111 0.889 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.259 -11.386 7.786 13.851 hybrid contribution -0.233 0.633 -1.065 1.261 sum -1.492 -10.753 6.721 12.768 Atomic orbital electron populations 1.23002 0.80647 1.04239 1.00409 1.87896 1.20639 1.25844 1.94286 1.22284 0.95192 0.83374 0.92672 1.21024 0.83513 0.87374 0.85445 1.90493 1.45472 1.22449 1.86418 1.43492 1.50011 1.19062 1.04869 1.19451 1.45397 0.90163 0.94612 0.89492 1.25843 0.96467 0.97849 0.98478 1.70093 1.32187 1.06611 1.39397 0.85405 0.78749 0.78243 0.78811 1.21766 1.21233 1.17737 1.21351 0.93353 0.83342 1.02308 1.22178 1.00237 0.87631 1.07704 1.23294 0.85858 0.86323 0.70208 1.90685 1.17282 1.88511 1.47651 1.84504 1.45432 1.17399 1.84924 1.22822 1.00258 1.00319 0.94398 1.22443 0.92560 1.02986 0.96430 1.22356 0.98967 0.99913 0.94287 1.22200 0.91175 1.02183 0.99049 0.95729 0.86061 0.92449 0.93391 0.90171 0.92621 0.84429 0.87995 0.71226 0.92341 0.89755 0.89330 0.90067 0.88551 0.92911 0.88950 0.93420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.36 8.63 113.37 0.98 1.34 16 2 O -0.37 -12.11 7.19 -148.98 -1.07 -13.18 16 3 C 0.11 4.14 0.53 -10.82 -0.01 4.14 16 4 C 0.44 21.97 4.70 87.66 0.41 22.38 16 5 O -0.57 -33.53 12.32 -3.09 -0.04 -33.57 16 6 N -0.45 -22.71 2.56 -635.54 -1.63 -24.34 16 7 C -0.37 -20.35 9.34 84.04 0.79 -19.57 16 8 H 0.09 4.55 7.94 -2.91 -0.02 4.52 16 9 C 0.02 1.22 4.20 84.93 0.36 1.58 16 10 N -0.85 -51.81 11.25 21.66 0.24 -51.57 16 11 Si 0.96 45.63 29.62 68.60 2.03 47.66 16 12 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 13 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 14 H -0.25 -11.05 7.11 99.48 0.71 -10.34 16 15 C 0.12 5.02 4.06 86.38 0.35 5.37 16 16 C -0.14 -4.64 5.79 29.85 0.17 -4.47 16 17 C 0.50 14.81 8.33 71.23 0.59 15.40 16 18 O -0.55 -19.40 16.74 21.96 0.37 -19.03 16 19 O -0.51 -10.84 13.42 -51.40 -0.69 -11.53 16 20 C -0.14 -4.88 5.70 31.69 0.18 -4.70 16 21 C -0.11 -2.84 6.91 31.91 0.22 -2.62 16 22 C -0.12 -3.44 6.83 31.67 0.22 -3.22 16 23 C -0.11 -3.87 4.35 31.32 0.14 -3.74 16 24 H 0.02 0.84 7.22 -2.39 -0.02 0.83 16 25 H 0.12 2.53 8.13 -2.38 -0.02 2.51 16 26 H 0.06 1.53 5.86 -2.39 -0.01 1.52 16 27 H 0.26 15.27 8.32 -92.71 -0.77 14.50 16 28 H 0.08 3.26 4.16 -2.38 -0.01 3.25 16 29 H 0.06 2.45 8.00 -2.39 -0.02 2.43 16 30 H 0.14 4.37 3.23 -2.39 -0.01 4.36 16 31 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 32 H 0.43 4.92 9.10 -74.05 -0.67 4.25 16 33 H 0.06 2.48 6.83 -2.38 -0.02 2.46 16 34 H 0.08 2.61 5.66 -2.39 -0.01 2.59 16 35 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.08 1.89 8.14 -2.38 -0.02 1.88 16 37 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 38 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.09 2.96 7.46 -2.39 -0.02 2.95 16 40 H 0.05 2.03 7.11 -2.38 -0.02 2.01 16 Total: -1.00 -74.94 313.54 4.02 -70.92 By element: Atomic # 1 Polarization: 22.35 SS G_CDS: 0.40 Total: 22.75 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: 4.40 Total: 11.90 kcal Atomic # 7 Polarization: -74.53 SS G_CDS: -1.38 Total: -75.91 kcal Atomic # 8 Polarization: -75.88 SS G_CDS: -1.43 Total: -77.32 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -74.94 4.02 -70.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606687432.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.939 kcal (2) G-P(sol) polarization free energy of solvation -74.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds