Wall clock time and date at job start Tue Mar 31 2020 06:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00361 * 2 1 4 4 C 1.50705 * 110.28846 * 300.84142 * 3 2 1 5 5 O 1.20822 * 120.00425 * 146.79466 * 4 3 2 6 6 O 1.34233 * 119.99562 * 326.79365 * 4 3 2 7 7 C 1.54605 * 110.33057 * 178.59436 * 3 2 1 8 8 C 1.54600 * 102.91426 * 262.80790 * 7 3 2 9 9 N 1.48120 * 103.41814 * 322.86385 * 8 7 3 10 10 C 1.34776 * 127.03224 * 219.28161 * 9 8 7 11 11 O 1.21274 * 119.99572 * 179.68657 * 10 9 8 12 12 C 1.50700 * 119.99915 * 359.69408 * 10 9 8 13 13 C 1.53002 * 109.46600 * 179.97438 * 12 10 9 14 14 C 1.53005 * 109.46607 * 179.97438 * 13 12 10 15 15 C 1.50699 * 109.46875 * 179.97438 * 14 13 12 16 16 H 1.08006 * 120.00124 * 0.02562 * 15 14 13 17 17 C 1.37874 * 120.00009 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00130 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 120.00132 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47279 * 60.00206 * 19 17 15 21 21 H 1.48503 * 109.47231 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47170 * 300.00335 * 19 17 15 23 23 C 1.47483 * 105.93009 * 39.02812 * 9 8 7 24 24 H 1.08998 * 109.47151 * 185.24891 * 1 2 3 25 25 H 1.09001 * 109.46977 * 305.25387 * 1 2 3 26 26 H 1.09004 * 109.46849 * 65.25039 * 1 2 3 27 27 H 0.96706 * 116.99866 * 180.02562 * 6 4 3 28 28 H 1.09006 * 110.73831 * 21.29162 * 7 3 2 29 29 H 1.08998 * 110.74407 * 144.61472 * 7 3 2 30 30 H 1.08997 * 110.61228 * 204.35475 * 8 7 3 31 31 H 1.08992 * 110.54675 * 81.34635 * 8 7 3 32 32 H 1.08993 * 109.47162 * 59.99524 * 12 10 9 33 33 H 1.08998 * 109.46564 * 299.99288 * 12 10 9 34 34 H 1.09003 * 109.47443 * 59.99962 * 13 12 10 35 35 H 1.08996 * 109.47504 * 299.99628 * 13 12 10 36 36 H 1.09007 * 109.47166 * 299.99388 * 14 13 12 37 37 H 1.08993 * 109.47064 * 59.99886 * 14 13 12 38 38 H 0.97000 * 120.00551 * 180.02562 * 18 17 15 39 39 H 1.09003 * 109.91907 * 94.13951 * 23 9 8 40 40 H 1.09006 * 109.91170 * 215.22257 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.5609 2.0776 -1.2137 5 8 1.4075 3.2741 -1.1458 6 8 1.3311 1.4360 -2.3701 7 6 3.5528 1.2066 0.0356 8 6 3.8761 1.3877 1.5365 9 7 2.8852 2.3942 1.9826 10 6 3.0915 3.4100 2.8440 11 8 2.1844 4.1672 3.1169 12 6 4.4494 3.6049 3.4679 13 6 4.4135 4.8190 4.3983 14 6 5.7919 5.0165 5.0322 15 6 5.7568 6.2126 5.9482 16 1 4.8426 6.7754 6.0667 17 6 6.8914 6.5880 6.6358 18 7 8.0044 5.9024 6.4919 19 14 6.8477 8.0703 7.7718 20 1 5.8393 7.8467 8.8386 21 1 8.1856 8.2621 8.3870 22 1 6.4836 9.2807 6.9923 23 6 1.6284 2.0611 1.2864 24 1 -0.3633 -1.0233 0.0940 25 1 -0.3633 0.5932 0.8392 26 1 -0.3633 0.4303 -0.9333 27 1 1.0447 1.9737 -3.1211 28 1 3.8853 0.2303 -0.3175 29 1 4.0045 2.0053 -0.5527 30 1 4.8911 1.7627 1.6678 31 1 3.7393 0.4490 2.0732 32 1 5.1889 3.7697 2.6844 33 1 4.7174 2.7164 4.0395 34 1 3.6738 4.6545 5.1819 35 1 4.1455 5.7073 3.8264 36 1 6.0595 4.1280 5.6044 37 1 6.5319 5.1807 4.2490 38 1 8.8026 6.1662 6.9759 39 1 1.0098 1.4258 1.9204 40 1 1.0886 2.9747 1.0373 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606696825.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:31 Heat of formation + Delta-G solvation = -172.244640 kcal Electronic energy + Delta-G solvation = -22794.626487 eV Core-core repulsion = 19188.626954 eV Total energy + Delta-G solvation = -3605.999533 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.50084 -39.68941 -38.46695 -36.84760 -36.17243 -34.19370 -32.12212 -31.49806 -29.49739 -27.98064 -27.10431 -25.39453 -23.56106 -23.06805 -20.78162 -20.17551 -19.18064 -18.99967 -17.86614 -17.20433 -16.31987 -16.17362 -16.11687 -15.63321 -15.16463 -14.99611 -14.75172 -14.40473 -14.33874 -13.76793 -13.50118 -12.83766 -12.62101 -12.55779 -12.30500 -12.18356 -11.98036 -11.86177 -11.81444 -11.60449 -11.33139 -11.07606 -10.77013 -10.60094 -10.53349 -10.26861 -9.72088 -9.65747 -9.27156 -9.02408 -8.81621 -8.30039 -5.95985 -3.97319 1.60381 2.30742 2.77935 2.85225 3.16644 3.38208 3.41371 3.45513 3.89750 3.97568 4.50634 4.54616 4.69999 4.77571 4.87067 4.89310 4.97078 5.18448 5.24892 5.28818 5.35015 5.40072 5.46770 5.56496 5.68428 5.72025 5.97578 6.03738 6.26000 6.42146 6.73623 6.94054 7.16893 7.38942 7.48700 7.72345 7.85191 8.04623 8.34564 8.48711 9.09451 9.66525 11.15524 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.037901 B = 0.002880 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.589332 B = 9721.218602 C = 9825.880116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.349 6.349 3 C 0.116 3.884 4 C 0.462 3.538 5 O -0.493 6.493 6 O -0.504 6.504 7 C -0.116 4.116 8 C 0.101 3.899 9 N -0.627 5.627 10 C 0.535 3.465 11 O -0.530 6.530 12 C -0.131 4.131 13 C -0.096 4.096 14 C 0.022 3.978 15 C -0.519 4.519 16 H 0.056 0.944 17 C 0.056 3.944 18 N -0.898 5.898 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 C 0.089 3.911 24 H 0.099 0.901 25 H 0.051 0.949 26 H 0.048 0.952 27 H 0.409 0.591 28 H 0.111 0.889 29 H 0.094 0.906 30 H 0.098 0.902 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.016 0.984 37 H 0.016 0.984 38 H 0.260 0.740 39 H 0.085 0.915 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.133 -16.319 -18.133 27.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.267 6.267 3 C 0.074 3.926 4 C 0.302 3.698 5 O -0.380 6.380 6 O -0.316 6.316 7 C -0.154 4.154 8 C -0.022 4.022 9 N -0.364 5.364 10 C 0.326 3.674 11 O -0.405 6.405 12 C -0.171 4.171 13 C -0.134 4.134 14 C -0.016 4.016 15 C -0.557 4.557 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.538 5.538 19 Si 0.720 3.280 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.035 4.035 24 H 0.117 0.883 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.268 0.732 28 H 0.129 0.871 29 H 0.112 0.888 30 H 0.116 0.884 31 H 0.103 0.897 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.034 0.966 37 H 0.034 0.966 38 H 0.070 0.930 39 H 0.103 0.897 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -12.238 -15.877 -17.471 26.591 hybrid contribution -0.402 1.267 -0.059 1.331 sum -12.641 -14.610 -17.530 26.087 Atomic orbital electron populations 1.23012 0.80192 1.04000 1.00801 1.88079 1.20553 1.23707 1.94362 1.22258 0.97047 0.83838 0.89459 1.23992 0.73841 0.87011 0.84931 1.90811 1.46571 1.16038 1.84534 1.84627 1.79660 1.45880 1.21402 1.22771 0.88919 1.05211 0.98504 1.22550 0.94451 0.92809 0.92365 1.48865 1.11411 1.30224 1.45921 1.21080 0.91729 0.77629 0.76961 1.90696 1.45546 1.43680 1.60538 1.21843 0.91920 1.02851 1.00495 1.21484 1.01075 0.94023 0.96858 1.19120 0.90193 0.96880 0.95358 1.21240 0.96462 1.12545 1.25445 0.92619 1.25011 0.95553 0.96909 0.96991 1.69947 1.01010 1.39969 1.42854 0.86651 0.76979 0.83278 0.81067 1.20228 1.21334 1.20232 1.22426 0.89265 1.01013 0.90773 0.88302 0.93091 0.93302 0.73155 0.87095 0.88800 0.88363 0.89720 0.89241 0.89157 0.92619 0.92619 0.96557 0.96580 0.93014 0.89679 0.88334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 10.30 101.05 1.04 1.15 16 2 O -0.35 -3.05 10.15 -48.66 -0.49 -3.54 16 3 C 0.12 1.12 1.01 -90.40 -0.09 1.03 16 4 C 0.46 4.69 6.08 36.01 0.22 4.90 16 5 O -0.49 -6.74 16.36 -18.75 -0.31 -7.05 16 6 O -0.50 -3.59 12.36 -44.33 -0.55 -4.13 16 7 C -0.12 -0.93 6.34 -25.05 -0.16 -1.09 16 8 C 0.10 0.92 6.93 -2.31 -0.02 0.90 16 9 N -0.63 -8.32 3.29 -169.98 -0.56 -8.88 16 10 C 0.54 9.20 7.89 -10.99 -0.09 9.11 16 11 O -0.53 -11.27 16.32 5.56 0.09 -11.17 16 12 C -0.13 -2.22 4.64 -27.88 -0.13 -2.35 16 13 C -0.10 -2.12 4.44 -26.73 -0.12 -2.24 16 14 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 15 C -0.52 -15.14 9.11 -34.44 -0.31 -15.46 16 16 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.90 -27.19 13.29 55.43 0.74 -26.45 16 19 Si 0.89 22.19 29.54 -169.99 -5.02 17.17 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 C 0.09 1.07 5.63 -2.98 -0.02 1.05 16 24 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.05 0.33 6.49 -51.93 -0.34 0.00 16 26 H 0.05 0.31 6.77 -51.93 -0.35 -0.04 16 27 H 0.41 1.20 9.10 45.56 0.41 1.62 16 28 H 0.11 0.66 8.08 -51.93 -0.42 0.24 16 29 H 0.09 0.76 7.86 -51.93 -0.41 0.35 16 30 H 0.10 0.79 7.23 -51.93 -0.38 0.41 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.09 1.37 7.90 -51.93 -0.41 0.95 16 33 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.06 1.27 8.10 -51.93 -0.42 0.85 16 35 H 0.06 1.28 8.10 -51.93 -0.42 0.86 16 36 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 39 H 0.09 0.92 6.71 -51.93 -0.35 0.57 16 40 H 0.10 1.41 6.67 -51.93 -0.35 1.07 16 LS Contribution 335.19 15.07 5.05 5.05 Total: -1.00 -36.96 335.19 -6.04 -42.99 By element: Atomic # 1 Polarization: 2.12 SS G_CDS: -5.08 Total: -2.96 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: 0.09 Total: -1.03 kcal Atomic # 7 Polarization: -35.51 SS G_CDS: 0.18 Total: -35.33 kcal Atomic # 8 Polarization: -24.64 SS G_CDS: -1.26 Total: -25.90 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -36.96 -6.04 -42.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606696825.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.250 kcal (2) G-P(sol) polarization free energy of solvation -36.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds