Wall clock time and date at job start Tue Mar 31 2020 06:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 114.00361 * 2 1 4 4 C 1.50705 * 110.28846 * 300.84142 * 3 2 1 5 5 O 1.20822 * 120.00425 * 146.79466 * 4 3 2 6 6 O 1.34233 * 119.99562 * 326.79365 * 4 3 2 7 7 C 1.54605 * 110.33057 * 178.59436 * 3 2 1 8 8 C 1.54600 * 102.91426 * 262.80790 * 7 3 2 9 9 N 1.48120 * 103.41814 * 322.86385 * 8 7 3 10 10 C 1.34776 * 127.03224 * 219.28161 * 9 8 7 11 11 O 1.21274 * 119.99572 * 179.68657 * 10 9 8 12 12 C 1.50700 * 119.99915 * 359.69408 * 10 9 8 13 13 C 1.53002 * 109.46600 * 179.97438 * 12 10 9 14 14 C 1.53005 * 109.46607 * 179.97438 * 13 12 10 15 15 C 1.50699 * 109.46875 * 179.97438 * 14 13 12 16 16 H 1.08006 * 120.00124 * 0.02562 * 15 14 13 17 17 C 1.37874 * 120.00009 * 179.97438 * 15 14 13 18 18 N 1.31511 * 120.00130 * 0.02562 * 17 15 14 19 19 Si 1.86805 * 120.00132 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47279 * 60.00206 * 19 17 15 21 21 H 1.48503 * 109.47231 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47170 * 300.00335 * 19 17 15 23 23 C 1.47483 * 105.93009 * 39.02812 * 9 8 7 24 24 H 1.08998 * 109.47151 * 185.24891 * 1 2 3 25 25 H 1.09001 * 109.46977 * 305.25387 * 1 2 3 26 26 H 1.09004 * 109.46849 * 65.25039 * 1 2 3 27 27 H 0.96706 * 116.99866 * 180.02562 * 6 4 3 28 28 H 1.09006 * 110.73831 * 21.29162 * 7 3 2 29 29 H 1.08998 * 110.74407 * 144.61472 * 7 3 2 30 30 H 1.08997 * 110.61228 * 204.35475 * 8 7 3 31 31 H 1.08992 * 110.54675 * 81.34635 * 8 7 3 32 32 H 1.08993 * 109.47162 * 59.99524 * 12 10 9 33 33 H 1.08998 * 109.46564 * 299.99288 * 12 10 9 34 34 H 1.09003 * 109.47443 * 59.99962 * 13 12 10 35 35 H 1.08996 * 109.47504 * 299.99628 * 13 12 10 36 36 H 1.09007 * 109.47166 * 299.99388 * 14 13 12 37 37 H 1.08993 * 109.47064 * 59.99886 * 14 13 12 38 38 H 0.97000 * 120.00551 * 180.02562 * 18 17 15 39 39 H 1.09003 * 109.91907 * 94.13951 * 23 9 8 40 40 H 1.09006 * 109.91170 * 215.22257 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.5609 2.0776 -1.2137 5 8 1.4075 3.2741 -1.1458 6 8 1.3311 1.4360 -2.3701 7 6 3.5528 1.2066 0.0356 8 6 3.8761 1.3877 1.5365 9 7 2.8852 2.3942 1.9826 10 6 3.0915 3.4100 2.8440 11 8 2.1844 4.1672 3.1169 12 6 4.4494 3.6049 3.4679 13 6 4.4135 4.8190 4.3983 14 6 5.7919 5.0165 5.0322 15 6 5.7568 6.2126 5.9482 16 1 4.8426 6.7754 6.0667 17 6 6.8914 6.5880 6.6358 18 7 8.0044 5.9024 6.4919 19 14 6.8477 8.0703 7.7718 20 1 5.8393 7.8467 8.8386 21 1 8.1856 8.2621 8.3870 22 1 6.4836 9.2807 6.9923 23 6 1.6284 2.0611 1.2864 24 1 -0.3633 -1.0233 0.0940 25 1 -0.3633 0.5932 0.8392 26 1 -0.3633 0.4303 -0.9333 27 1 1.0447 1.9737 -3.1211 28 1 3.8853 0.2303 -0.3175 29 1 4.0045 2.0053 -0.5527 30 1 4.8911 1.7627 1.6678 31 1 3.7393 0.4490 2.0732 32 1 5.1889 3.7697 2.6844 33 1 4.7174 2.7164 4.0395 34 1 3.6738 4.6545 5.1819 35 1 4.1455 5.7073 3.8264 36 1 6.0595 4.1280 5.6044 37 1 6.5319 5.1807 4.2490 38 1 8.8026 6.1662 6.9759 39 1 1.0098 1.4258 1.9204 40 1 1.0886 2.9747 1.0373 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606696825.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:31 Heat of formation + Delta-G solvation = -199.396103 kcal Electronic energy + Delta-G solvation = -22795.803863 eV Core-core repulsion = 19188.626954 eV Total energy + Delta-G solvation = -3607.176909 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.31513 -40.79218 -39.39248 -37.66198 -37.02266 -36.13360 -34.05721 -32.52135 -30.50301 -29.51228 -27.83182 -26.61717 -25.18171 -23.93152 -22.24479 -21.28241 -20.39635 -19.72793 -18.68896 -18.54428 -18.11934 -17.20848 -17.00646 -16.76061 -16.51248 -16.05278 -15.85135 -15.66658 -15.37374 -14.80785 -14.40839 -14.35692 -14.12281 -13.74673 -13.50881 -13.16983 -13.09258 -13.03197 -12.75998 -12.61712 -12.56136 -12.50125 -12.45008 -12.24659 -11.82823 -11.56352 -11.47198 -11.27580 -11.01029 -10.82645 -10.53308 -9.89581 -8.19641 -6.29376 0.81928 1.39766 1.42582 1.50410 1.52660 1.54864 1.88661 2.41342 2.44013 3.07100 3.13278 3.25446 3.68547 3.92813 4.00119 4.13803 4.16292 4.22144 4.31704 4.33190 4.44312 4.48571 4.61376 4.70690 4.80100 4.81883 4.92724 4.95750 5.06644 5.13897 5.20918 5.34721 5.53972 5.75945 5.77954 5.86870 6.27110 6.36044 6.76392 6.85376 7.05890 7.38993 8.91662 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.037901 B = 0.002880 C = 0.002849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.589332 B = 9721.218602 C = 9825.880116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.348 6.348 3 C 0.120 3.880 4 C 0.470 3.530 5 O -0.536 6.536 6 O -0.493 6.493 7 C -0.110 4.110 8 C 0.094 3.906 9 N -0.623 5.623 10 C 0.534 3.466 11 O -0.584 6.584 12 C -0.121 4.121 13 C -0.084 4.084 14 C 0.029 3.971 15 C -0.550 4.550 16 H 0.049 0.951 17 C 0.005 3.995 18 N -0.928 5.928 19 Si 0.960 3.040 20 H -0.270 1.270 21 H -0.277 1.277 22 H -0.271 1.271 23 C 0.086 3.914 24 H 0.121 0.879 25 H 0.048 0.952 26 H 0.050 0.950 27 H 0.429 0.571 28 H 0.140 0.860 29 H 0.092 0.908 30 H 0.112 0.888 31 H 0.108 0.892 32 H 0.110 0.890 33 H 0.114 0.886 34 H 0.041 0.959 35 H 0.037 0.963 36 H 0.005 0.995 37 H 0.003 0.997 38 H 0.265 0.735 39 H 0.096 0.904 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.839 -17.933 -18.914 28.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 O -0.266 6.266 3 C 0.078 3.922 4 C 0.312 3.688 5 O -0.426 6.426 6 O -0.306 6.306 7 C -0.148 4.148 8 C -0.027 4.027 9 N -0.358 5.358 10 C 0.325 3.675 11 O -0.463 6.463 12 C -0.160 4.160 13 C -0.122 4.122 14 C -0.009 4.009 15 C -0.588 4.588 16 H 0.068 0.932 17 C -0.193 4.193 18 N -0.568 5.568 19 Si 0.785 3.215 20 H -0.195 1.195 21 H -0.202 1.202 22 H -0.196 1.196 23 C -0.038 4.038 24 H 0.140 0.860 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.291 0.709 28 H 0.158 0.842 29 H 0.111 0.889 30 H 0.130 0.870 31 H 0.126 0.874 32 H 0.128 0.872 33 H 0.132 0.868 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.023 0.977 37 H 0.021 0.979 38 H 0.074 0.926 39 H 0.114 0.886 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.941 -17.560 -18.313 28.041 hybrid contribution -0.541 1.666 0.089 1.754 sum -12.482 -15.894 -18.223 27.212 Atomic orbital electron populations 1.23218 0.79243 1.05483 1.00837 1.88088 1.21583 1.22655 1.94233 1.22121 0.98231 0.83882 0.87988 1.24049 0.72773 0.86294 0.85698 1.90809 1.48647 1.17890 1.85273 1.84577 1.78950 1.45783 1.21313 1.22841 0.87442 1.06828 0.97692 1.22941 0.94085 0.92471 0.93226 1.48794 1.13131 1.29573 1.44327 1.20953 0.91038 0.78039 0.77493 1.90672 1.46893 1.45995 1.62786 1.21659 0.92684 1.01305 1.00356 1.21195 0.98053 0.95888 0.97081 1.18994 0.91965 0.95388 0.94510 1.21668 0.96612 1.13868 1.26678 0.93226 1.25873 0.95062 0.99917 0.98455 1.70045 1.01603 1.41467 1.43658 0.85581 0.77505 0.79467 0.78987 1.19458 1.20224 1.19592 1.22488 0.88700 1.00262 0.92330 0.86045 0.93349 0.93117 0.70896 0.84193 0.88901 0.86951 0.87440 0.87156 0.86759 0.94052 0.94398 0.97708 0.97905 0.92605 0.88585 0.91294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 10.30 113.37 1.17 1.26 16 2 O -0.35 -5.14 10.15 -136.14 -1.38 -6.52 16 3 C 0.12 2.10 1.01 -10.65 -0.01 2.09 16 4 C 0.47 8.99 6.08 71.24 0.43 9.42 16 5 O -0.54 -14.77 16.36 21.98 0.36 -14.41 16 6 O -0.49 -5.95 12.36 -46.60 -0.58 -6.53 16 7 C -0.11 -1.45 6.34 31.69 0.20 -1.25 16 8 C 0.09 1.43 6.93 86.61 0.60 2.03 16 9 N -0.62 -15.91 3.29 -810.08 -2.67 -18.58 16 10 C 0.53 18.38 7.89 87.66 0.69 19.08 16 11 O -0.58 -25.77 16.32 -3.01 -0.05 -25.82 16 12 C -0.12 -4.01 4.64 29.85 0.14 -3.87 16 13 C -0.08 -3.78 4.44 30.60 0.14 -3.65 16 14 C 0.03 1.52 4.97 29.85 0.15 1.67 16 15 C -0.55 -32.70 9.11 25.60 0.23 -32.46 16 16 H 0.05 2.93 7.74 -2.91 -0.02 2.90 16 17 C 0.01 0.30 5.46 84.65 0.46 0.76 16 18 N -0.93 -56.30 13.29 21.45 0.28 -56.02 16 19 Si 0.96 45.51 29.54 68.60 2.03 47.53 16 20 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 21 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 22 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 23 C 0.09 2.02 5.63 86.53 0.49 2.50 16 24 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 25 H 0.05 0.58 6.49 -2.39 -0.02 0.56 16 26 H 0.05 0.56 6.77 -2.38 -0.02 0.54 16 27 H 0.43 1.64 9.10 -74.05 -0.67 0.97 16 28 H 0.14 1.08 8.08 -2.38 -0.02 1.06 16 29 H 0.09 1.27 7.86 -2.39 -0.02 1.26 16 30 H 0.11 1.43 7.23 -2.39 -0.02 1.41 16 31 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.11 3.20 7.90 -2.39 -0.02 3.18 16 33 H 0.11 3.25 8.14 -2.39 -0.02 3.23 16 34 H 0.04 1.94 8.10 -2.39 -0.02 1.92 16 35 H 0.04 1.80 8.10 -2.39 -0.02 1.78 16 36 H 0.00 0.25 8.14 -2.38 -0.02 0.23 16 37 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 38 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 39 H 0.10 2.01 6.71 -2.39 -0.02 1.99 16 40 H 0.07 2.06 6.67 -2.38 -0.02 2.05 16 Total: -1.00 -81.67 335.19 3.06 -78.61 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: 0.38 Total: 4.16 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: 4.69 Total: -2.42 kcal Atomic # 7 Polarization: -72.21 SS G_CDS: -2.38 Total: -74.60 kcal Atomic # 8 Polarization: -51.64 SS G_CDS: -1.65 Total: -53.28 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.53 kcal Total: -81.67 3.06 -78.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606696825.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.789 kcal (2) G-P(sol) polarization free energy of solvation -81.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds