Wall clock time and date at job start Tue Mar 31 2020 06:10:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 114.00309 * 2 1 4 4 C 1.50696 * 110.88173 * 59.85838 * 3 2 1 5 5 O 1.20826 * 120.00023 * 218.83320 * 4 3 2 6 6 O 1.34230 * 120.00329 * 38.83437 * 4 3 2 7 7 C 1.55154 * 111.00760 * 183.73937 * 3 2 1 8 8 C 1.54326 * 102.94171 * 82.57012 * 7 3 2 9 9 N 1.47024 * 107.26698 * 22.19423 * 8 7 3 10 10 C 1.34788 * 125.64455 * 181.01894 * 9 8 7 11 11 O 1.21275 * 119.99820 * 180.02562 * 10 9 8 12 12 C 1.50701 * 119.99975 * 0.02711 * 10 9 8 13 13 C 1.53001 * 109.46954 * 179.97438 * 12 10 9 14 14 C 1.52995 * 109.46857 * 179.97438 * 13 12 10 15 15 C 1.50702 * 109.47016 * 179.97438 * 14 13 12 16 16 H 1.07995 * 119.99667 * 359.97438 * 15 14 13 17 17 C 1.37874 * 119.99943 * 180.02562 * 15 14 13 18 18 N 1.31519 * 120.00298 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99947 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46929 * 359.97438 * 19 17 15 21 21 H 1.48506 * 109.47157 * 119.99738 * 19 17 15 22 22 H 1.48497 * 109.47271 * 239.99619 * 19 17 15 23 23 C 1.47423 * 108.70655 * 1.28662 * 9 8 7 24 24 H 1.08999 * 109.46850 * 305.78125 * 1 2 3 25 25 H 1.08992 * 109.46859 * 65.78800 * 1 2 3 26 26 H 1.08999 * 109.46551 * 185.78974 * 1 2 3 27 27 H 0.96700 * 116.99804 * 179.97438 * 6 4 3 28 28 H 1.09005 * 110.71909 * 324.20940 * 7 3 2 29 29 H 1.08999 * 110.87137 * 201.00503 * 7 3 2 30 30 H 1.08999 * 109.88380 * 262.77473 * 8 7 3 31 31 H 1.08996 * 110.00719 * 141.68090 * 8 7 3 32 32 H 1.09002 * 109.46846 * 59.99906 * 12 10 9 33 33 H 1.09006 * 109.46891 * 299.99861 * 12 10 9 34 34 H 1.08998 * 109.47035 * 59.99615 * 13 12 10 35 35 H 1.08998 * 109.46956 * 299.99742 * 13 12 10 36 36 H 1.08998 * 109.47238 * 299.99706 * 14 13 12 37 37 H 1.09007 * 109.47231 * 60.00065 * 14 13 12 38 38 H 0.96996 * 119.99819 * 180.02562 * 18 17 15 39 39 H 1.08993 * 110.36600 * 94.48542 * 23 9 8 40 40 H 1.09001 * 110.36601 * 216.80480 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.5830 2.0838 1.2176 5 8 1.3363 3.2629 1.1250 6 8 1.4763 1.4671 2.4051 7 6 3.5569 1.2256 -0.0945 8 6 3.8023 1.0533 -1.6083 9 7 2.6133 1.5666 -2.3044 10 6 2.4277 1.5762 -3.6394 11 8 1.4030 2.0268 -4.1058 12 6 3.4935 1.0269 -4.5523 13 6 3.0355 1.1558 -6.0064 14 6 4.1178 0.5987 -6.9332 15 6 3.6665 0.7251 -8.3655 16 1 2.7038 1.1590 -8.5919 17 6 4.4821 0.2859 -9.3866 18 7 5.6543 -0.2429 -9.1109 19 14 3.9223 0.4419 -11.1620 20 1 2.5751 1.0653 -11.2032 21 1 4.8838 1.2900 -11.9115 22 1 3.8629 -0.9058 -11.7825 23 6 1.6606 2.0750 -1.3008 24 1 -0.3633 0.6009 0.8337 25 1 -0.3633 0.4214 -0.9372 26 1 -0.3632 -1.0224 0.1037 27 1 1.1991 2.0079 3.1573 28 1 3.9331 0.3643 0.4577 29 1 4.0161 2.1452 0.2684 30 1 3.9428 -0.0018 -1.8433 31 1 4.6825 1.6206 -1.9104 32 1 3.6666 -0.0235 -4.3179 33 1 4.4174 1.5877 -4.4108 34 1 2.8621 2.2060 -6.2409 35 1 2.1118 0.5947 -6.1475 36 1 5.0413 1.1602 -6.7921 37 1 4.2917 -0.4516 -6.6988 38 1 6.2282 -0.5515 -9.8293 39 1 1.7960 3.1470 -1.1582 40 1 0.6368 1.8583 -1.6057 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606696826.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:34 Heat of formation + Delta-G solvation = -173.507042 kcal Electronic energy + Delta-G solvation = -22787.406491 eV Core-core repulsion = 19181.352217 eV Total energy + Delta-G solvation = -3606.054275 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.47720 -39.80072 -38.40393 -36.83603 -36.20010 -34.19306 -32.15759 -31.60814 -29.51296 -27.96267 -27.09797 -25.34349 -23.58258 -22.93261 -20.86488 -20.22443 -19.21305 -18.92474 -17.96707 -17.24055 -16.29456 -16.18143 -16.01033 -15.71334 -15.21464 -14.99125 -14.78632 -14.47735 -14.33597 -13.63524 -13.48623 -13.01550 -12.70732 -12.40501 -12.38955 -12.20981 -12.06478 -11.97490 -11.78870 -11.63874 -11.33040 -11.01102 -10.80949 -10.58204 -10.50458 -10.25201 -9.73188 -9.65815 -9.27384 -8.99971 -8.71385 -8.30841 -5.96400 -3.97579 1.50986 2.20286 2.84382 2.94834 3.09632 3.34833 3.42103 3.48033 3.80642 3.95122 4.50542 4.51765 4.66004 4.74357 4.86711 4.92072 5.01812 5.12756 5.27301 5.33226 5.39814 5.42403 5.49304 5.56021 5.70998 5.76256 5.89231 6.09096 6.26264 6.44663 6.73847 6.94310 7.16992 7.31234 7.46629 7.72797 7.85288 8.04528 8.33934 8.48590 9.09758 9.66410 11.15166 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.040743 B = 0.002851 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.075963 B = 9817.143636 C = 9949.666343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.342 6.342 3 C 0.109 3.891 4 C 0.471 3.529 5 O -0.500 6.500 6 O -0.502 6.502 7 C -0.111 4.111 8 C 0.105 3.895 9 N -0.623 5.623 10 C 0.533 3.467 11 O -0.533 6.533 12 C -0.132 4.132 13 C -0.096 4.096 14 C 0.021 3.979 15 C -0.517 4.517 16 H 0.056 0.944 17 C 0.055 3.945 18 N -0.898 5.898 19 Si 0.891 3.109 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.284 1.284 23 C 0.095 3.905 24 H 0.043 0.957 25 H 0.053 0.947 26 H 0.100 0.900 27 H 0.410 0.590 28 H 0.108 0.892 29 H 0.098 0.902 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.016 0.984 37 H 0.016 0.984 38 H 0.259 0.741 39 H 0.094 0.906 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.321 1.316 26.156 26.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.260 6.260 3 C 0.067 3.933 4 C 0.311 3.689 5 O -0.387 6.387 6 O -0.313 6.313 7 C -0.149 4.149 8 C -0.018 4.018 9 N -0.360 5.360 10 C 0.323 3.677 11 O -0.409 6.409 12 C -0.171 4.171 13 C -0.134 4.134 14 C -0.016 4.016 15 C -0.555 4.555 16 H 0.075 0.925 17 C -0.145 4.145 18 N -0.538 5.538 19 Si 0.719 3.281 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.211 1.211 23 C -0.028 4.028 24 H 0.062 0.938 25 H 0.071 0.929 26 H 0.118 0.882 27 H 0.269 0.731 28 H 0.126 0.874 29 H 0.116 0.884 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.034 0.966 37 H 0.034 0.966 38 H 0.069 0.931 39 H 0.112 0.888 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.579 1.395 25.332 25.976 hybrid contribution -0.596 0.598 -0.277 0.889 sum -6.176 1.993 25.054 25.881 Atomic orbital electron populations 1.22980 0.80048 1.03966 1.00578 1.88065 1.20567 1.23164 1.94225 1.22511 0.97129 0.84448 0.89238 1.23812 0.73646 0.86517 0.84912 1.90776 1.45051 1.17027 1.85821 1.84628 1.80527 1.47045 1.19125 1.22765 0.89473 1.05189 0.97490 1.22032 0.88907 1.00923 0.89960 1.48505 1.18975 1.63182 1.05338 1.21068 0.88920 0.77731 0.79931 1.90689 1.29447 1.46269 1.74455 1.21844 0.96762 1.01959 0.96566 1.21473 1.00439 1.01575 0.89896 1.19131 0.93126 0.96063 0.93322 1.21312 1.03114 1.39665 0.91418 0.92525 1.25019 0.94986 0.95353 0.99181 1.69973 1.09797 1.41805 1.32175 0.86542 0.78814 0.77684 0.85028 1.19689 1.21046 1.21051 1.22559 0.95926 0.98816 0.85512 0.93844 0.92875 0.88199 0.73064 0.87390 0.88402 0.89915 0.90056 0.89184 0.89244 0.92661 0.92665 0.96569 0.96560 0.93134 0.88821 0.89212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 10.47 101.05 1.06 1.23 16 2 O -0.34 -3.46 10.36 -45.45 -0.47 -3.93 16 3 C 0.11 1.04 0.89 -89.51 -0.08 0.96 16 4 C 0.47 4.25 5.99 36.00 0.22 4.47 16 5 O -0.50 -5.76 16.49 -18.75 -0.31 -6.07 16 6 O -0.50 -3.22 13.00 -43.58 -0.57 -3.78 16 7 C -0.11 -0.83 6.14 -24.90 -0.15 -0.98 16 8 C 0.10 0.97 6.48 -3.06 -0.02 0.95 16 9 N -0.62 -8.15 3.33 -170.38 -0.57 -8.71 16 10 C 0.53 8.98 7.85 -10.98 -0.09 8.89 16 11 O -0.53 -11.03 16.24 5.56 0.09 -10.94 16 12 C -0.13 -2.22 4.89 -27.88 -0.14 -2.35 16 13 C -0.10 -2.09 4.44 -26.73 -0.12 -2.21 16 14 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 15 C -0.52 -15.03 9.11 -34.44 -0.31 -15.34 16 16 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 17 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.90 -27.13 13.29 55.43 0.74 -26.39 16 19 Si 0.89 22.11 29.54 -169.99 -5.02 17.08 16 20 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 22 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 23 C 0.10 1.14 5.75 -2.41 -0.01 1.13 16 24 H 0.04 0.32 6.82 -51.93 -0.35 -0.03 16 25 H 0.05 0.48 6.57 -51.93 -0.34 0.14 16 26 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.41 0.81 9.10 45.56 0.41 1.22 16 28 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.10 0.60 8.04 -51.93 -0.42 0.18 16 30 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 33 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 34 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 35 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 39 H 0.09 1.15 7.23 -51.93 -0.38 0.78 16 40 H 0.09 1.15 6.19 -51.93 -0.32 0.83 16 LS Contribution 337.34 15.07 5.08 5.08 Total: -1.00 -36.37 337.34 -6.07 -42.43 By element: Atomic # 1 Polarization: 1.74 SS G_CDS: -5.16 Total: -3.42 kcal Atomic # 6 Polarization: -1.46 SS G_CDS: 0.12 Total: -1.35 kcal Atomic # 7 Polarization: -35.28 SS G_CDS: 0.17 Total: -35.11 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: -1.26 Total: -24.73 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -36.37 -6.07 -42.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606696826.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.074 kcal (2) G-P(sol) polarization free energy of solvation -36.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds