Wall clock time and date at job start Tue Mar 31 2020 06:10:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 114.00309 * 2 1 4 4 C 1.50696 * 110.88173 * 59.85838 * 3 2 1 5 5 O 1.20826 * 120.00023 * 218.83320 * 4 3 2 6 6 O 1.34230 * 120.00329 * 38.83437 * 4 3 2 7 7 C 1.55154 * 111.00760 * 183.73937 * 3 2 1 8 8 C 1.54326 * 102.94171 * 82.57012 * 7 3 2 9 9 N 1.47024 * 107.26698 * 22.19423 * 8 7 3 10 10 C 1.34788 * 125.64455 * 181.01894 * 9 8 7 11 11 O 1.21275 * 119.99820 * 180.02562 * 10 9 8 12 12 C 1.50701 * 119.99975 * 0.02711 * 10 9 8 13 13 C 1.53001 * 109.46954 * 179.97438 * 12 10 9 14 14 C 1.52995 * 109.46857 * 179.97438 * 13 12 10 15 15 C 1.50702 * 109.47016 * 179.97438 * 14 13 12 16 16 H 1.07995 * 119.99667 * 359.97438 * 15 14 13 17 17 C 1.37874 * 119.99943 * 180.02562 * 15 14 13 18 18 N 1.31519 * 120.00298 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99947 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46929 * 359.97438 * 19 17 15 21 21 H 1.48506 * 109.47157 * 119.99738 * 19 17 15 22 22 H 1.48497 * 109.47271 * 239.99619 * 19 17 15 23 23 C 1.47423 * 108.70655 * 1.28662 * 9 8 7 24 24 H 1.08999 * 109.46850 * 305.78125 * 1 2 3 25 25 H 1.08992 * 109.46859 * 65.78800 * 1 2 3 26 26 H 1.08999 * 109.46551 * 185.78974 * 1 2 3 27 27 H 0.96700 * 116.99804 * 179.97438 * 6 4 3 28 28 H 1.09005 * 110.71909 * 324.20940 * 7 3 2 29 29 H 1.08999 * 110.87137 * 201.00503 * 7 3 2 30 30 H 1.08999 * 109.88380 * 262.77473 * 8 7 3 31 31 H 1.08996 * 110.00719 * 141.68090 * 8 7 3 32 32 H 1.09002 * 109.46846 * 59.99906 * 12 10 9 33 33 H 1.09006 * 109.46891 * 299.99861 * 12 10 9 34 34 H 1.08998 * 109.47035 * 59.99615 * 13 12 10 35 35 H 1.08998 * 109.46956 * 299.99742 * 13 12 10 36 36 H 1.08998 * 109.47238 * 299.99706 * 14 13 12 37 37 H 1.09007 * 109.47231 * 60.00065 * 14 13 12 38 38 H 0.96996 * 119.99819 * 180.02562 * 18 17 15 39 39 H 1.08993 * 110.36600 * 94.48542 * 23 9 8 40 40 H 1.09001 * 110.36601 * 216.80480 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.5830 2.0838 1.2176 5 8 1.3363 3.2629 1.1250 6 8 1.4763 1.4671 2.4051 7 6 3.5569 1.2256 -0.0945 8 6 3.8023 1.0533 -1.6083 9 7 2.6133 1.5666 -2.3044 10 6 2.4277 1.5762 -3.6394 11 8 1.4030 2.0268 -4.1058 12 6 3.4935 1.0269 -4.5523 13 6 3.0355 1.1558 -6.0064 14 6 4.1178 0.5987 -6.9332 15 6 3.6665 0.7251 -8.3655 16 1 2.7038 1.1590 -8.5919 17 6 4.4821 0.2859 -9.3866 18 7 5.6543 -0.2429 -9.1109 19 14 3.9223 0.4419 -11.1620 20 1 2.5751 1.0653 -11.2032 21 1 4.8838 1.2900 -11.9115 22 1 3.8629 -0.9058 -11.7825 23 6 1.6606 2.0750 -1.3008 24 1 -0.3633 0.6009 0.8337 25 1 -0.3633 0.4214 -0.9372 26 1 -0.3632 -1.0224 0.1037 27 1 1.1991 2.0079 3.1573 28 1 3.9331 0.3643 0.4577 29 1 4.0161 2.1452 0.2684 30 1 3.9428 -0.0018 -1.8433 31 1 4.6825 1.6206 -1.9104 32 1 3.6666 -0.0235 -4.3179 33 1 4.4174 1.5877 -4.4108 34 1 2.8621 2.2060 -6.2409 35 1 2.1118 0.5947 -6.1475 36 1 5.0413 1.1602 -6.7921 37 1 4.2917 -0.4516 -6.6988 38 1 6.2282 -0.5515 -9.8293 39 1 1.7960 3.1470 -1.1582 40 1 0.6368 1.8583 -1.6057 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606696826.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:32 Heat of formation + Delta-G solvation = -200.019490 kcal Electronic energy + Delta-G solvation = -22788.556157 eV Core-core repulsion = 19181.352217 eV Total energy + Delta-G solvation = -3607.203941 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.24891 -40.84566 -39.36002 -37.57696 -37.03676 -36.12722 -34.05370 -32.65937 -30.49436 -29.52815 -27.89818 -26.58028 -25.13309 -23.83324 -22.19824 -21.40612 -20.37621 -19.65516 -18.67502 -18.62672 -18.11851 -17.20250 -16.92269 -16.66666 -16.51636 -16.18853 -15.85661 -15.67016 -15.48885 -14.70747 -14.48505 -14.31246 -13.97977 -13.81701 -13.73007 -13.16987 -13.07682 -13.01798 -12.80162 -12.66234 -12.63548 -12.50234 -12.37553 -12.28009 -11.73445 -11.55245 -11.47729 -11.25284 -11.02730 -10.83362 -10.53559 -9.77328 -8.19575 -6.29161 0.81628 1.39834 1.40147 1.42895 1.53993 1.58096 2.05764 2.34357 2.42507 2.98825 3.13455 3.23363 3.73623 3.90693 4.01193 4.10537 4.19270 4.20464 4.26489 4.27582 4.35977 4.48247 4.68083 4.70441 4.74786 4.81186 4.92228 5.00434 5.08091 5.16244 5.22106 5.35100 5.54908 5.75368 5.76454 5.87470 6.27008 6.35020 6.78811 6.86154 7.06555 7.39405 8.92135 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.040743 B = 0.002851 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.075963 B = 9817.143636 C = 9949.666343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.351 6.351 3 C 0.110 3.890 4 C 0.483 3.517 5 O -0.529 6.529 6 O -0.494 6.494 7 C -0.103 4.103 8 C 0.093 3.907 9 N -0.617 5.617 10 C 0.532 3.468 11 O -0.584 6.584 12 C -0.121 4.121 13 C -0.083 4.083 14 C 0.028 3.972 15 C -0.547 4.547 16 H 0.050 0.950 17 C 0.004 3.996 18 N -0.928 5.928 19 Si 0.961 3.039 20 H -0.269 1.269 21 H -0.275 1.275 22 H -0.275 1.275 23 C 0.091 3.909 24 H 0.053 0.947 25 H 0.039 0.961 26 H 0.117 0.883 27 H 0.431 0.569 28 H 0.131 0.869 29 H 0.114 0.886 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.109 0.891 33 H 0.111 0.889 34 H 0.040 0.960 35 H 0.039 0.961 36 H 0.003 0.997 37 H 0.003 0.997 38 H 0.265 0.735 39 H 0.089 0.911 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.689 0.836 27.562 27.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.269 6.269 3 C 0.067 3.933 4 C 0.324 3.676 5 O -0.419 6.419 6 O -0.307 6.307 7 C -0.140 4.140 8 C -0.028 4.028 9 N -0.351 5.351 10 C 0.323 3.677 11 O -0.463 6.463 12 C -0.160 4.160 13 C -0.121 4.121 14 C -0.010 4.010 15 C -0.585 4.585 16 H 0.068 0.932 17 C -0.194 4.194 18 N -0.568 5.568 19 Si 0.786 3.214 20 H -0.194 1.194 21 H -0.200 1.200 22 H -0.200 1.200 23 C -0.033 4.033 24 H 0.071 0.929 25 H 0.057 0.943 26 H 0.135 0.865 27 H 0.294 0.706 28 H 0.149 0.851 29 H 0.133 0.867 30 H 0.110 0.890 31 H 0.118 0.882 32 H 0.128 0.872 33 H 0.129 0.871 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.021 0.979 37 H 0.021 0.979 38 H 0.074 0.926 39 H 0.107 0.893 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.924 0.897 26.816 27.279 hybrid contribution -0.796 0.719 -0.609 1.234 sum -5.721 1.616 26.207 26.873 Atomic orbital electron populations 1.23098 0.79450 1.05181 1.00253 1.88056 1.21316 1.23323 1.94194 1.22448 0.98567 0.83969 0.88283 1.23532 0.72907 0.85778 0.85415 1.90779 1.46531 1.18251 1.86343 1.84570 1.79948 1.47136 1.19048 1.22867 0.87733 1.07130 0.96272 1.22408 0.87827 1.01679 0.90910 1.48418 1.20438 1.61789 1.04460 1.20897 0.88080 0.77502 0.81244 1.90667 1.31188 1.48758 1.75729 1.21653 0.97407 1.03662 0.93307 1.21183 0.98432 0.99871 0.92635 1.19004 0.93672 0.95119 0.93156 1.21715 1.03188 1.40209 0.93401 0.93205 1.25884 0.95000 0.94735 1.03789 1.70067 1.10740 1.42207 1.33831 0.85464 0.78500 0.78108 0.79378 1.19356 1.20034 1.20030 1.22593 0.95007 0.99025 0.86672 0.92880 0.94285 0.86509 0.70590 0.85122 0.86730 0.88956 0.88151 0.87249 0.87082 0.94145 0.94182 0.97858 0.97896 0.92640 0.89319 0.90796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 10.47 113.37 1.19 1.43 16 2 O -0.35 -6.46 10.36 -139.21 -1.44 -7.90 16 3 C 0.11 1.90 0.89 -10.07 -0.01 1.89 16 4 C 0.48 7.79 5.99 71.23 0.43 8.21 16 5 O -0.53 -11.61 16.49 21.96 0.36 -11.24 16 6 O -0.49 -4.95 13.00 -47.28 -0.61 -5.56 16 7 C -0.10 -1.21 6.14 31.78 0.20 -1.01 16 8 C 0.09 1.48 6.48 86.73 0.56 2.04 16 9 N -0.62 -15.56 3.33 -811.36 -2.70 -18.26 16 10 C 0.53 17.94 7.85 87.66 0.69 18.63 16 11 O -0.58 -24.96 16.24 -3.01 -0.05 -25.01 16 12 C -0.12 -4.00 4.89 29.85 0.15 -3.85 16 13 C -0.08 -3.71 4.44 30.59 0.14 -3.57 16 14 C 0.03 1.46 4.97 29.85 0.15 1.61 16 15 C -0.55 -32.37 9.11 25.60 0.23 -32.14 16 16 H 0.05 2.94 7.74 -2.91 -0.02 2.91 16 17 C 0.00 0.23 5.46 84.65 0.46 0.69 16 18 N -0.93 -56.24 13.29 21.45 0.28 -55.95 16 19 Si 0.96 45.39 29.54 68.60 2.03 47.41 16 20 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 21 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 22 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 23 C 0.09 2.14 5.75 86.93 0.50 2.64 16 24 H 0.05 0.71 6.82 -2.39 -0.02 0.70 16 25 H 0.04 0.72 6.57 -2.39 -0.02 0.70 16 26 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.43 0.46 9.10 -74.06 -0.67 -0.21 16 28 H 0.13 1.01 8.14 -2.38 -0.02 0.99 16 29 H 0.11 1.00 8.04 -2.39 -0.02 0.98 16 30 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.11 3.20 8.14 -2.39 -0.02 3.18 16 33 H 0.11 3.19 8.14 -2.38 -0.02 3.18 16 34 H 0.04 1.89 8.10 -2.39 -0.02 1.87 16 35 H 0.04 1.87 8.10 -2.39 -0.02 1.85 16 36 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 37 H 0.00 0.15 8.14 -2.38 -0.02 0.13 16 38 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 39 H 0.09 2.20 7.23 -2.39 -0.02 2.18 16 40 H 0.07 1.98 6.19 -2.39 -0.01 1.96 16 Total: -1.00 -79.54 337.34 2.92 -76.62 By element: Atomic # 1 Polarization: 2.94 SS G_CDS: 0.38 Total: 3.32 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: 4.68 Total: -3.43 kcal Atomic # 7 Polarization: -71.80 SS G_CDS: -2.41 Total: -74.21 kcal Atomic # 8 Polarization: -47.97 SS G_CDS: -1.74 Total: -49.71 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.41 kcal Total: -79.54 2.92 -76.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606696826.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.403 kcal (2) G-P(sol) polarization free energy of solvation -79.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds