Wall clock time and date at job start Tue Mar 31 2020 06:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42909 * 114.00128 * 2 1 4 4 H 1.08996 * 109.44858 * 29.96223 * 3 2 1 5 5 C 1.53040 * 109.45650 * 269.99629 * 3 2 1 6 6 C 1.53191 * 109.31322 * 301.34660 * 5 3 2 7 7 N 1.46928 * 108.77580 * 305.36467 * 6 5 3 8 8 C 1.34777 * 120.63115 * 233.59030 * 7 6 5 9 9 O 1.21285 * 120.00045 * 175.87575 * 8 7 6 10 10 C 1.50700 * 120.00055 * 355.87359 * 8 7 6 11 11 C 1.52997 * 109.47220 * 179.97438 * 10 8 7 12 12 C 1.50700 * 109.47220 * 180.02562 * 11 10 8 13 13 H 1.07999 * 120.00255 * 359.97438 * 12 11 10 14 14 C 1.37872 * 119.99991 * 180.02562 * 12 11 10 15 15 N 1.31517 * 120.00492 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00124 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47534 * 179.97438 * 16 14 12 18 18 H 1.48507 * 109.46917 * 299.99511 * 16 14 12 19 19 H 1.48496 * 109.47350 * 59.99381 * 16 14 12 20 20 C 1.46926 * 118.73893 * 53.86128 * 7 6 5 21 21 H 1.09001 * 109.58638 * 65.92731 * 20 7 6 22 22 C 1.50696 * 109.58780 * 186.35454 * 20 7 6 23 23 O 1.20823 * 120.00250 * 66.85081 * 22 20 7 24 24 O 1.34228 * 120.00190 * 246.85202 * 22 20 7 25 25 C 1.53044 * 109.45829 * 149.93096 * 3 2 1 26 26 H 1.09004 * 109.47202 * 300.00394 * 1 2 3 27 27 H 1.09008 * 109.46943 * 60.00230 * 1 2 3 28 28 H 1.08991 * 109.47368 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.49631 * 181.38854 * 5 3 2 30 30 H 1.09000 * 109.49687 * 61.29870 * 5 3 2 31 31 H 1.09002 * 109.58458 * 185.58090 * 6 5 3 32 32 H 1.08998 * 109.59074 * 65.15382 * 6 5 3 33 33 H 1.09007 * 109.47180 * 60.00403 * 10 8 7 34 34 H 1.08996 * 109.47131 * 300.00337 * 10 8 7 35 35 H 1.09007 * 109.46614 * 60.00180 * 11 10 8 36 36 H 1.08996 * 109.47445 * 300.00269 * 11 10 8 37 37 H 0.97004 * 119.99340 * 0.02562 * 15 14 12 38 38 H 0.96700 * 117.00329 * 179.97438 * 24 22 20 39 39 H 1.09000 * 109.49550 * 178.60482 * 25 3 2 40 40 H 1.08998 * 109.49520 * 298.66460 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3445 1.9992 0.5133 5 6 2.2177 1.7712 -1.4430 6 6 3.1259 0.7753 -2.1712 7 7 4.3685 0.6193 -1.4029 8 6 5.5672 0.8005 -1.9917 9 8 6.5825 0.7427 -1.3308 10 6 5.6461 1.0749 -3.4714 11 6 7.1106 1.2407 -3.8821 12 6 7.1894 1.5157 -5.3617 13 1 6.2854 1.5667 -5.9504 14 6 8.4156 1.7012 -5.9640 15 7 9.5166 1.6386 -5.2473 16 14 8.5133 2.0428 -7.7979 17 1 9.9348 2.2036 -8.1965 18 1 7.9145 0.9079 -8.5454 19 1 7.7683 3.2889 -8.1097 20 6 4.2798 0.2562 0.0180 21 1 3.8682 -0.7486 0.1133 22 6 5.6523 0.3040 0.6384 23 8 6.2270 1.3606 0.7530 24 8 6.2364 -0.8272 1.0636 25 6 3.3585 1.2633 0.7230 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0276 0.0005 29 1 2.6837 2.7565 -1.4439 30 1 1.2544 1.8234 -1.9505 31 1 3.3571 1.1525 -3.1674 32 1 2.6222 -0.1880 -2.2508 33 1 5.0991 1.9894 -3.7011 34 1 5.2068 0.2414 -4.0194 35 1 7.6580 0.3264 -3.6524 36 1 7.5495 2.0744 -3.3340 37 1 9.4658 1.4615 -4.2949 38 1 7.1173 -0.7465 1.4543 39 1 3.8138 2.2534 0.7018 40 1 3.2070 0.9547 1.7574 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606750573.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:54 Heat of formation + Delta-G solvation = -174.211097 kcal Electronic energy + Delta-G solvation = -23830.399962 eV Core-core repulsion = 20224.315157 eV Total energy + Delta-G solvation = -3606.084805 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.01542 -39.10271 -38.52344 -36.14483 -35.63833 -33.84467 -32.41461 -31.71238 -30.54991 -27.15284 -26.13621 -24.85137 -24.33083 -22.33878 -21.31537 -20.49784 -18.69005 -18.01435 -17.21470 -16.73996 -16.22747 -16.19372 -15.90178 -15.73415 -15.35929 -14.82514 -14.47516 -13.89468 -13.72545 -13.60648 -13.51363 -13.03270 -12.78096 -12.73367 -12.22594 -12.16176 -11.73404 -11.53560 -11.40389 -11.31371 -11.22360 -11.08524 -10.81614 -10.13448 -10.12204 -10.10824 -9.94439 -9.82034 -9.15272 -8.61932 -8.52667 -8.27298 -6.30592 -4.00917 2.38032 2.92194 3.21127 3.29105 3.44383 3.46050 3.48426 3.67304 4.36154 4.47871 4.58348 4.72384 4.72702 4.96408 5.01769 5.06891 5.14198 5.22153 5.31633 5.34929 5.46117 5.47236 5.50460 5.55175 5.66020 5.75897 5.93937 6.04119 6.06773 6.45889 6.70868 6.83032 6.90499 7.50040 7.52315 7.57574 8.18173 8.26650 8.49741 8.55240 8.92598 9.73025 11.10291 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.020929 B = 0.004453 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.529237 B = 6285.814994 C = 7311.252697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.381 6.381 3 C 0.093 3.907 4 H 0.071 0.929 5 C -0.160 4.160 6 C 0.119 3.881 7 N -0.614 5.614 8 C 0.507 3.493 9 O -0.510 6.510 10 C -0.116 4.116 11 C 0.024 3.976 12 C -0.609 4.609 13 H 0.049 0.951 14 C 0.015 3.985 15 N -0.910 5.910 16 Si 1.070 2.930 17 H -0.282 1.282 18 H -0.288 1.288 19 H -0.288 1.288 20 C 0.162 3.838 21 H 0.105 0.895 22 C 0.493 3.507 23 O -0.499 6.499 24 O -0.521 6.521 25 C -0.119 4.119 26 H 0.040 0.960 27 H 0.042 0.958 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.014 0.986 36 H 0.015 0.985 37 H 0.272 0.728 38 H 0.409 0.591 39 H 0.095 0.905 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.866 -2.970 12.034 24.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.300 6.300 3 C 0.035 3.965 4 H 0.089 0.911 5 C -0.199 4.199 6 C -0.003 4.003 7 N -0.353 5.353 8 C 0.298 3.702 9 O -0.385 6.385 10 C -0.155 4.155 11 C -0.013 4.013 12 C -0.647 4.647 13 H 0.067 0.933 14 C -0.189 4.189 15 N -0.546 5.546 16 Si 0.899 3.101 17 H -0.208 1.208 18 H -0.215 1.215 19 H -0.215 1.215 20 C 0.057 3.943 21 H 0.123 0.877 22 C 0.335 3.665 23 O -0.385 6.385 24 O -0.333 6.333 25 C -0.157 4.157 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.104 0.896 29 H 0.100 0.900 30 H 0.099 0.901 31 H 0.114 0.886 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.032 0.968 36 H 0.033 0.967 37 H 0.083 0.917 38 H 0.267 0.733 39 H 0.113 0.887 40 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -19.341 -2.608 10.997 22.401 hybrid contribution -0.901 -0.018 1.509 1.758 sum -20.242 -2.626 12.506 23.938 Atomic orbital electron populations 1.22792 0.81069 1.02820 0.99911 1.87949 1.19605 1.27389 1.95030 1.22060 0.93946 0.85069 0.95449 0.91139 1.22455 1.00778 1.00341 0.96317 1.21641 0.83668 0.99785 0.95243 1.48312 1.07183 1.71999 1.07795 1.21804 0.81830 0.74629 0.91903 1.90689 1.34373 1.49707 1.63763 1.21726 1.03886 1.02152 0.87768 1.19033 0.88503 0.97229 0.96558 1.22001 0.95141 1.54300 0.93237 0.93258 1.25851 0.92186 0.94235 1.06639 1.70734 1.29427 1.45016 1.09389 0.83534 0.76031 0.76331 0.74238 1.20770 1.21463 1.21483 1.20516 0.90178 1.00989 0.82572 0.87749 1.22399 0.87367 0.81735 0.75048 1.90699 1.63444 1.31947 1.52408 1.84408 1.37076 1.37719 1.74106 1.22065 0.93572 1.00703 0.99379 0.94131 0.93939 0.89598 0.89972 0.90106 0.88552 0.90492 0.89940 0.89791 0.96778 0.96661 0.91724 0.73257 0.88697 0.89723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.82 101.05 1.09 1.28 16 2 O -0.38 -3.47 9.07 -35.23 -0.32 -3.79 16 3 C 0.09 0.82 2.92 -26.69 -0.08 0.74 16 4 H 0.07 0.49 7.78 -51.93 -0.40 0.08 16 5 C -0.16 -1.44 5.80 -26.61 -0.15 -1.60 16 6 C 0.12 1.36 6.09 -3.71 -0.02 1.34 16 7 N -0.61 -9.51 2.97 -166.28 -0.49 -10.00 16 8 C 0.51 10.33 7.57 -10.99 -0.08 10.24 16 9 O -0.51 -12.40 11.56 -22.01 -0.25 -12.65 16 10 C -0.12 -2.43 4.02 -27.88 -0.11 -2.54 16 11 C 0.02 0.67 3.57 -27.88 -0.10 0.57 16 12 C -0.61 -17.67 9.11 -34.44 -0.31 -17.99 16 13 H 0.05 1.36 7.74 -52.49 -0.41 0.95 16 14 C 0.02 0.46 5.46 -17.82 -0.10 0.36 16 15 N -0.91 -29.21 13.65 55.43 0.76 -28.45 16 16 Si 1.07 25.65 29.90 -169.99 -5.08 20.57 16 17 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 19 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 20 C 0.16 2.31 3.13 -68.53 -0.21 2.10 16 21 H 0.10 1.38 7.81 -51.93 -0.41 0.97 16 22 C 0.49 8.53 4.86 36.00 0.17 8.70 16 23 O -0.50 -10.42 15.33 -26.93 -0.41 -10.83 16 24 O -0.52 -7.86 13.42 -42.09 -0.56 -8.43 16 25 C -0.12 -1.31 5.05 -26.38 -0.13 -1.45 16 26 H 0.04 0.20 8.08 -51.93 -0.42 -0.22 16 27 H 0.04 0.22 7.90 -51.92 -0.41 -0.19 16 28 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.08 0.55 7.90 -51.93 -0.41 0.14 16 31 H 0.10 1.09 5.96 -51.93 -0.31 0.78 16 32 H 0.08 0.81 7.81 -51.93 -0.41 0.40 16 33 H 0.08 1.58 7.52 -51.93 -0.39 1.19 16 34 H 0.08 1.61 8.09 -51.93 -0.42 1.19 16 35 H 0.01 0.41 7.97 -51.93 -0.41 0.00 16 36 H 0.02 0.45 7.97 -51.93 -0.41 0.04 16 37 H 0.27 8.91 7.22 -40.82 -0.29 8.62 16 38 H 0.41 4.76 9.10 45.56 0.41 5.18 16 39 H 0.09 1.17 7.86 -51.93 -0.41 0.76 16 40 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 326.75 15.07 4.92 4.92 Total: -1.00 -38.24 326.75 -6.65 -44.89 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -5.16 Total: 2.03 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: -0.04 Total: 1.76 kcal Atomic # 7 Polarization: -38.72 SS G_CDS: 0.26 Total: -38.46 kcal Atomic # 8 Polarization: -34.16 SS G_CDS: -1.55 Total: -35.71 kcal Atomic # 14 Polarization: 25.65 SS G_CDS: -5.08 Total: 20.57 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -38.24 -6.65 -44.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606750573.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.322 kcal (2) G-P(sol) polarization free energy of solvation -38.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds