Wall clock time and date at job start Tue Mar 31 2020 06:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42909 * 114.00128 * 2 1 4 4 H 1.08996 * 109.44858 * 29.96223 * 3 2 1 5 5 C 1.53040 * 109.45650 * 269.99629 * 3 2 1 6 6 C 1.53191 * 109.31322 * 301.34660 * 5 3 2 7 7 N 1.46928 * 108.77580 * 305.36467 * 6 5 3 8 8 C 1.34777 * 120.63115 * 233.59030 * 7 6 5 9 9 O 1.21285 * 120.00045 * 175.87575 * 8 7 6 10 10 C 1.50700 * 120.00055 * 355.87359 * 8 7 6 11 11 C 1.52997 * 109.47220 * 179.97438 * 10 8 7 12 12 C 1.50700 * 109.47220 * 180.02562 * 11 10 8 13 13 H 1.07999 * 120.00255 * 359.97438 * 12 11 10 14 14 C 1.37872 * 119.99991 * 180.02562 * 12 11 10 15 15 N 1.31517 * 120.00492 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00124 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47534 * 179.97438 * 16 14 12 18 18 H 1.48507 * 109.46917 * 299.99511 * 16 14 12 19 19 H 1.48496 * 109.47350 * 59.99381 * 16 14 12 20 20 C 1.46926 * 118.73893 * 53.86128 * 7 6 5 21 21 H 1.09001 * 109.58638 * 65.92731 * 20 7 6 22 22 C 1.50696 * 109.58780 * 186.35454 * 20 7 6 23 23 O 1.20823 * 120.00250 * 66.85081 * 22 20 7 24 24 O 1.34228 * 120.00190 * 246.85202 * 22 20 7 25 25 C 1.53044 * 109.45829 * 149.93096 * 3 2 1 26 26 H 1.09004 * 109.47202 * 300.00394 * 1 2 3 27 27 H 1.09008 * 109.46943 * 60.00230 * 1 2 3 28 28 H 1.08991 * 109.47368 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.49631 * 181.38854 * 5 3 2 30 30 H 1.09000 * 109.49687 * 61.29870 * 5 3 2 31 31 H 1.09002 * 109.58458 * 185.58090 * 6 5 3 32 32 H 1.08998 * 109.59074 * 65.15382 * 6 5 3 33 33 H 1.09007 * 109.47180 * 60.00403 * 10 8 7 34 34 H 1.08996 * 109.47131 * 300.00337 * 10 8 7 35 35 H 1.09007 * 109.46614 * 60.00180 * 11 10 8 36 36 H 1.08996 * 109.47445 * 300.00269 * 11 10 8 37 37 H 0.97004 * 119.99340 * 0.02562 * 15 14 12 38 38 H 0.96700 * 117.00329 * 179.97438 * 24 22 20 39 39 H 1.09000 * 109.49550 * 178.60482 * 25 3 2 40 40 H 1.08998 * 109.49520 * 298.66460 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3445 1.9992 0.5133 5 6 2.2177 1.7712 -1.4430 6 6 3.1259 0.7753 -2.1712 7 7 4.3685 0.6193 -1.4029 8 6 5.5672 0.8005 -1.9917 9 8 6.5825 0.7427 -1.3308 10 6 5.6461 1.0749 -3.4714 11 6 7.1106 1.2407 -3.8821 12 6 7.1894 1.5157 -5.3617 13 1 6.2854 1.5667 -5.9504 14 6 8.4156 1.7012 -5.9640 15 7 9.5166 1.6386 -5.2473 16 14 8.5133 2.0428 -7.7979 17 1 9.9348 2.2036 -8.1965 18 1 7.9145 0.9079 -8.5454 19 1 7.7683 3.2889 -8.1097 20 6 4.2798 0.2562 0.0180 21 1 3.8682 -0.7486 0.1133 22 6 5.6523 0.3040 0.6384 23 8 6.2270 1.3606 0.7530 24 8 6.2364 -0.8272 1.0636 25 6 3.3585 1.2633 0.7230 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3633 -1.0276 0.0005 29 1 2.6837 2.7565 -1.4439 30 1 1.2544 1.8234 -1.9505 31 1 3.3571 1.1525 -3.1674 32 1 2.6222 -0.1880 -2.2508 33 1 5.0991 1.9894 -3.7011 34 1 5.2068 0.2414 -4.0194 35 1 7.6580 0.3264 -3.6524 36 1 7.5495 2.0744 -3.3340 37 1 9.4658 1.4615 -4.2949 38 1 7.1173 -0.7465 1.4543 39 1 3.8138 2.2534 0.7018 40 1 3.2070 0.9547 1.7574 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606750573.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:54 Heat of formation + Delta-G solvation = -202.320825 kcal Electronic energy + Delta-G solvation = -23831.618891 eV Core-core repulsion = 20224.315157 eV Total energy + Delta-G solvation = -3607.303734 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.29798 -40.29701 -39.66762 -37.24716 -36.95695 -36.00026 -33.71218 -32.75480 -32.24967 -28.09120 -27.27016 -26.44488 -25.30808 -24.24866 -22.48899 -21.72990 -19.95127 -19.40439 -18.96656 -18.16886 -17.55106 -17.27063 -17.14982 -16.59410 -16.27360 -16.06035 -15.82366 -15.61154 -15.17220 -15.05278 -14.33827 -14.26346 -14.22315 -13.96192 -13.72835 -13.48098 -13.29820 -12.70592 -12.60983 -12.48622 -12.23955 -12.18019 -12.08229 -11.96912 -11.93810 -11.82265 -11.41683 -10.88418 -10.64367 -10.56643 -10.48629 -9.84412 -8.71142 -6.43316 1.07584 1.43730 1.54014 1.64496 1.82697 1.96508 2.02147 2.59672 2.82563 3.15910 3.48483 3.66985 3.79465 3.84081 4.00882 4.07158 4.22284 4.28755 4.30340 4.37544 4.54990 4.58072 4.59829 4.70154 4.73506 4.77567 4.88248 4.98927 5.00796 5.18563 5.23249 5.31269 5.36745 5.67767 5.90309 6.09587 6.18894 6.29097 6.48126 6.91513 7.09475 7.43689 8.68455 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.020929 B = 0.004453 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.529237 B = 6285.814994 C = 7311.252697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.398 6.398 3 C 0.098 3.902 4 H 0.098 0.902 5 C -0.156 4.156 6 C 0.108 3.892 7 N -0.602 5.602 8 C 0.501 3.499 9 O -0.563 6.563 10 C -0.103 4.103 11 C 0.029 3.971 12 C -0.617 4.617 13 H 0.071 0.929 14 C -0.046 4.046 15 N -0.940 5.940 16 Si 1.126 2.874 17 H -0.289 1.289 18 H -0.262 1.262 19 H -0.263 1.263 20 C 0.160 3.840 21 H 0.121 0.879 22 C 0.487 3.513 23 O -0.542 6.542 24 O -0.519 6.519 25 C -0.115 4.115 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.112 0.888 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.105 0.895 34 H 0.108 0.892 35 H -0.023 1.023 36 H -0.027 1.027 37 H 0.249 0.751 38 H 0.420 0.580 39 H 0.078 0.922 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.678 -3.049 10.864 27.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.317 6.317 3 C 0.041 3.959 4 H 0.116 0.884 5 C -0.194 4.194 6 C -0.012 4.012 7 N -0.338 5.338 8 C 0.292 3.708 9 O -0.443 6.443 10 C -0.142 4.142 11 C -0.008 4.008 12 C -0.655 4.655 13 H 0.089 0.911 14 C -0.243 4.243 15 N -0.577 5.577 16 Si 0.945 3.055 17 H -0.215 1.215 18 H -0.186 1.186 19 H -0.187 1.187 20 C 0.056 3.944 21 H 0.138 0.862 22 C 0.331 3.669 23 O -0.431 6.431 24 O -0.332 6.332 25 C -0.153 4.153 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.110 0.890 29 H 0.093 0.907 30 H 0.131 0.869 31 H 0.117 0.883 32 H 0.113 0.887 33 H 0.123 0.877 34 H 0.126 0.874 35 H -0.005 1.005 36 H -0.008 1.008 37 H 0.058 0.942 38 H 0.281 0.719 39 H 0.097 0.903 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -23.250 -2.715 9.856 25.399 hybrid contribution 0.227 -0.067 1.972 1.986 sum -23.023 -2.782 11.828 26.033 Atomic orbital electron populations 1.22978 0.79398 1.03700 1.01062 1.87922 1.21414 1.27286 1.95123 1.22007 0.92929 0.85847 0.95153 0.88415 1.22466 1.01459 0.98980 0.96518 1.22034 0.82239 1.01703 0.95245 1.48279 1.06983 1.69931 1.08621 1.21627 0.82736 0.74897 0.91579 1.90677 1.36582 1.52357 1.64665 1.21490 0.99496 1.04229 0.89005 1.18847 0.92334 0.93714 0.95927 1.22473 0.95994 1.53017 0.93978 0.91105 1.27732 0.91934 0.93155 1.11438 1.70904 1.30852 1.47714 1.08269 0.82862 0.76210 0.78114 0.68267 1.21477 1.18622 1.18737 1.20838 0.88893 1.02937 0.81731 0.86152 1.23145 0.88328 0.81293 0.74133 1.90669 1.64886 1.33498 1.54092 1.84387 1.37979 1.37006 1.73821 1.22088 0.94098 0.98694 1.00437 0.93038 0.92703 0.88979 0.90657 0.86942 0.88254 0.88730 0.87695 0.87412 1.00505 1.00826 0.94156 0.71932 0.90340 0.88019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 10.82 113.37 1.23 1.42 16 2 O -0.40 -5.73 9.07 -148.98 -1.35 -7.09 16 3 C 0.10 1.38 2.92 30.62 0.09 1.47 16 4 H 0.10 0.91 7.78 -2.39 -0.02 0.89 16 5 C -0.16 -2.24 5.80 30.67 0.18 -2.06 16 6 C 0.11 2.16 6.09 86.36 0.53 2.68 16 7 N -0.60 -18.00 2.97 -798.36 -2.37 -20.36 16 8 C 0.50 20.73 7.57 87.66 0.66 21.40 16 9 O -0.56 -28.85 11.56 23.31 0.27 -28.58 16 10 C -0.10 -4.30 4.02 29.85 0.12 -4.18 16 11 C 0.03 1.68 3.57 29.85 0.11 1.79 16 12 C -0.62 -35.98 9.11 25.60 0.23 -35.75 16 13 H 0.07 3.76 7.74 -2.91 -0.02 3.73 16 14 C -0.05 -2.78 5.46 84.65 0.46 -2.32 16 15 N -0.94 -62.60 13.65 21.45 0.29 -62.31 16 16 Si 1.13 50.68 29.90 68.60 2.05 52.73 16 17 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 18 H -0.26 -10.61 7.11 99.48 0.71 -9.90 16 19 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 20 C 0.16 4.41 3.13 44.37 0.14 4.55 16 21 H 0.12 2.96 7.81 -2.39 -0.02 2.94 16 22 C 0.49 17.28 4.86 71.23 0.35 17.63 16 23 O -0.54 -23.76 15.33 29.80 0.46 -23.30 16 24 O -0.52 -16.05 13.42 -48.68 -0.65 -16.70 16 25 C -0.12 -2.33 5.05 30.82 0.16 -2.18 16 26 H 0.05 0.31 8.08 -2.39 -0.02 0.29 16 27 H 0.05 0.31 7.90 -2.38 -0.02 0.30 16 28 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.11 0.97 7.90 -2.39 -0.02 0.95 16 31 H 0.10 1.93 5.96 -2.39 -0.01 1.92 16 32 H 0.09 1.62 7.81 -2.39 -0.02 1.60 16 33 H 0.10 3.88 7.52 -2.38 -0.02 3.86 16 34 H 0.11 3.96 8.09 -2.39 -0.02 3.94 16 35 H -0.02 -1.49 7.97 -2.38 -0.02 -1.51 16 36 H -0.03 -1.73 7.97 -2.39 -0.02 -1.74 16 37 H 0.25 17.40 7.22 -92.71 -0.67 16.73 16 38 H 0.42 10.35 9.10 -74.06 -0.67 9.67 16 39 H 0.08 1.88 7.86 -2.39 -0.02 1.86 16 40 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -88.06 326.75 3.42 -84.64 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: 0.48 Total: 16.52 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: 4.25 Total: 4.45 kcal Atomic # 7 Polarization: -80.60 SS G_CDS: -2.08 Total: -82.67 kcal Atomic # 8 Polarization: -74.39 SS G_CDS: -1.28 Total: -75.67 kcal Atomic # 14 Polarization: 50.68 SS G_CDS: 2.05 Total: 52.73 kcal Total: -88.06 3.42 -84.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606750573.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -117.681 kcal (2) G-P(sol) polarization free energy of solvation -88.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds