Wall clock time and date at job start Tue Mar 31 2020 06:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42907 * 113.99937 * 2 1 4 4 H 1.09001 * 109.44720 * 329.96380 * 3 2 1 5 5 C 1.53039 * 109.45909 * 89.93028 * 3 2 1 6 6 C 1.53624 * 109.24349 * 58.53032 * 5 3 2 7 7 N 1.46924 * 108.54280 * 54.85585 * 6 5 3 8 8 C 1.34775 * 120.62869 * 126.36761 * 7 6 5 9 9 O 1.21285 * 119.99991 * 173.68292 * 8 7 6 10 10 C 1.50699 * 120.00195 * 353.68032 * 8 7 6 11 11 C 1.53002 * 109.47229 * 180.02562 * 10 8 7 12 12 C 1.50705 * 109.47317 * 180.02562 * 11 10 8 13 13 H 1.08006 * 119.99602 * 359.97438 * 12 11 10 14 14 C 1.37871 * 120.00258 * 179.97438 * 12 11 10 15 15 N 1.31515 * 119.99777 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00159 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.46961 * 60.00227 * 16 14 12 18 18 H 1.48498 * 109.47001 * 179.97438 * 16 14 12 19 19 H 1.48494 * 109.47065 * 300.00359 * 16 14 12 20 20 C 1.46922 * 118.73794 * 306.09674 * 7 6 5 21 21 H 1.09007 * 109.58289 * 293.92785 * 20 7 6 22 22 C 1.50699 * 109.58508 * 173.64683 * 20 7 6 23 23 O 1.20816 * 120.00274 * 298.81544 * 22 20 7 24 24 O 1.34233 * 120.00042 * 118.81416 * 22 20 7 25 25 C 1.53036 * 109.45775 * 209.99810 * 3 2 1 26 26 H 1.09002 * 109.47653 * 300.00264 * 1 2 3 27 27 H 1.09007 * 109.47105 * 60.00498 * 1 2 3 28 28 H 1.09004 * 109.47552 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.49694 * 178.61176 * 5 3 2 30 30 H 1.09000 * 109.49750 * 298.66953 * 5 3 2 31 31 H 1.08999 * 109.73851 * 295.11630 * 6 5 3 32 32 H 1.09006 * 109.66151 * 174.54886 * 6 5 3 33 33 H 1.09002 * 109.47432 * 300.00007 * 10 8 7 34 34 H 1.09003 * 109.47027 * 59.99677 * 10 8 7 35 35 H 1.09007 * 109.46965 * 299.99810 * 11 10 8 36 36 H 1.08993 * 109.46960 * 60.00065 * 11 10 8 37 37 H 0.96998 * 120.00149 * 180.02562 * 15 14 12 38 38 H 0.96700 * 117.00374 * 179.97438 * 24 22 20 39 39 H 1.09005 * 109.49486 * 181.39479 * 25 3 2 40 40 H 1.08997 * 109.52856 * 61.31191 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9990 -0.5145 5 6 2.2159 1.7720 1.4430 6 6 3.1235 0.7711 2.1741 7 7 4.3668 0.6202 1.4060 8 6 5.5648 0.8018 1.9962 9 8 6.5846 0.5634 1.3843 10 6 5.6374 1.3009 3.4162 11 6 7.1025 1.4189 3.8412 12 6 7.1750 1.9175 5.2615 13 1 6.2669 2.1294 5.8064 14 6 8.4005 2.1031 5.8653 15 7 9.5063 1.8455 5.2015 16 14 8.4904 2.7217 7.6256 17 1 7.7898 1.7674 8.5220 18 1 9.9124 2.8350 8.0384 19 1 7.8406 4.0539 7.7158 20 6 4.2795 0.2619 -0.0162 21 1 3.8724 -0.7445 -0.1150 22 6 5.6523 0.3145 -0.6356 23 8 6.2675 1.3542 -0.6537 24 8 6.1917 -0.7938 -1.1671 25 6 3.3591 1.2630 -0.7214 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 2.6819 2.7574 1.4438 30 1 1.2520 1.8250 1.9491 31 1 2.6216 -0.1935 2.2501 32 1 3.3534 1.1454 3.1718 33 1 5.1604 2.2788 3.4825 34 1 5.1230 0.6005 4.0743 35 1 7.5799 0.4412 3.7749 36 1 7.6163 2.1196 3.1831 37 1 10.3685 1.9757 5.6263 38 1 7.0744 -0.7108 -1.5533 39 1 3.8144 2.2532 -0.7002 40 1 3.2096 0.9535 -1.7558 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606750575.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:56 Heat of formation + Delta-G solvation = -197.855553 kcal Electronic energy + Delta-G solvation = -23797.477297 eV Core-core repulsion = 20190.367192 eV Total energy + Delta-G solvation = -3607.110105 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.23691 -40.23166 -39.59624 -37.17866 -36.90901 -35.62541 -33.68643 -32.73374 -32.29953 -28.26077 -27.40373 -26.50113 -25.24253 -24.04089 -22.39467 -21.55746 -19.89741 -19.31399 -18.75762 -17.98654 -17.37470 -17.23659 -17.09617 -16.54286 -16.45129 -16.14053 -15.97785 -15.62230 -15.00369 -14.78599 -14.25859 -14.20500 -14.14101 -14.02624 -13.55594 -13.26970 -13.19760 -12.79037 -12.59959 -12.50160 -12.41447 -12.17891 -12.04861 -11.94289 -11.89203 -11.57449 -11.37581 -11.32105 -10.65842 -10.57140 -10.44322 -9.75492 -8.18333 -6.33387 1.15017 1.41759 1.46967 1.54613 1.56038 1.99011 2.08899 2.43096 2.86528 3.14559 3.57091 3.74236 3.88096 3.90047 4.05694 4.12184 4.32488 4.38797 4.43899 4.47845 4.58974 4.63090 4.64442 4.75116 4.77828 4.84258 4.98072 5.01806 5.08655 5.24118 5.41031 5.48885 5.58598 5.71702 5.82682 6.14841 6.23204 6.33013 6.84210 6.99583 7.17150 7.37216 8.94461 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.020965 B = 0.004451 C = 0.003822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.209013 B = 6288.700040 C = 7323.453686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.398 6.398 3 C 0.098 3.902 4 H 0.098 0.902 5 C -0.156 4.156 6 C 0.109 3.891 7 N -0.605 5.605 8 C 0.503 3.497 9 O -0.564 6.564 10 C -0.109 4.109 11 C 0.045 3.955 12 C -0.543 4.543 13 H 0.079 0.921 14 C -0.008 4.008 15 N -0.940 5.940 16 Si 0.977 3.023 17 H -0.260 1.260 18 H -0.289 1.289 19 H -0.261 1.261 20 C 0.161 3.839 21 H 0.117 0.883 22 C 0.487 3.513 23 O -0.544 6.544 24 O -0.518 6.518 25 C -0.116 4.116 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.091 0.909 29 H 0.077 0.923 30 H 0.111 0.889 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.104 0.896 34 H 0.109 0.891 35 H -0.020 1.020 36 H -0.025 1.025 37 H 0.262 0.738 38 H 0.421 0.579 39 H 0.079 0.921 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.024 -2.823 -10.991 26.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.318 6.318 3 C 0.041 3.959 4 H 0.116 0.884 5 C -0.194 4.194 6 C -0.011 4.011 7 N -0.342 5.342 8 C 0.294 3.706 9 O -0.443 6.443 10 C -0.148 4.148 11 C 0.008 3.992 12 C -0.581 4.581 13 H 0.097 0.903 14 C -0.205 4.205 15 N -0.580 5.580 16 Si 0.800 3.200 17 H -0.184 1.184 18 H -0.215 1.215 19 H -0.186 1.186 20 C 0.057 3.943 21 H 0.135 0.865 22 C 0.331 3.669 23 O -0.434 6.434 24 O -0.330 6.330 25 C -0.154 4.154 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.109 0.891 29 H 0.096 0.904 30 H 0.129 0.871 31 H 0.110 0.890 32 H 0.119 0.881 33 H 0.122 0.878 34 H 0.127 0.873 35 H -0.001 1.001 36 H -0.006 1.006 37 H 0.071 0.929 38 H 0.281 0.719 39 H 0.098 0.902 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -23.433 -2.879 -11.141 26.106 hybrid contribution 1.504 0.444 0.280 1.593 sum -21.928 -2.435 -10.861 24.592 Atomic orbital electron populations 1.22970 0.79460 1.03642 1.01043 1.87924 1.21358 1.27380 1.95129 1.22010 0.92901 0.85777 0.95260 0.88440 1.22540 1.01453 0.99063 0.96376 1.22108 0.82175 1.01502 0.95355 1.48275 1.07049 1.70384 1.08452 1.21633 0.82539 0.76169 0.90288 1.90645 1.36270 1.52224 1.65136 1.21608 1.00247 1.02846 0.90127 1.18665 0.90914 0.94517 0.95128 1.21665 0.93354 1.44509 0.98539 0.90265 1.26185 0.95260 0.95586 1.03492 1.70193 0.98342 1.49899 1.39525 0.85330 0.77021 0.79416 0.78206 1.18405 1.21458 1.18592 1.20681 0.88797 1.02928 0.81873 0.86488 1.23193 0.88600 0.80992 0.74117 1.90687 1.62787 1.34230 1.55658 1.84382 1.38799 1.38735 1.71119 1.22019 0.94156 0.98759 1.00433 0.92717 0.93051 0.89055 0.90438 0.87120 0.88954 0.88081 0.87837 0.87317 1.00147 1.00644 0.92891 0.71917 0.90225 0.87951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 10.82 113.37 1.23 1.43 16 2 O -0.40 -5.83 9.07 -148.98 -1.35 -7.18 16 3 C 0.10 1.38 2.91 30.62 0.09 1.47 16 4 H 0.10 0.90 7.79 -2.39 -0.02 0.88 16 5 C -0.16 -2.24 5.81 30.82 0.18 -2.06 16 6 C 0.11 2.19 6.13 86.51 0.53 2.72 16 7 N -0.60 -18.30 2.97 -798.35 -2.37 -20.67 16 8 C 0.50 21.10 7.39 87.66 0.65 21.75 16 9 O -0.56 -29.37 11.74 22.41 0.26 -29.10 16 10 C -0.11 -4.57 4.00 29.85 0.12 -4.45 16 11 C 0.05 2.63 4.26 29.85 0.13 2.76 16 12 C -0.54 -31.44 9.11 25.60 0.23 -31.20 16 13 H 0.08 4.11 7.74 -2.91 -0.02 4.09 16 14 C -0.01 -0.47 5.46 84.65 0.46 -0.01 16 15 N -0.94 -61.12 13.29 21.45 0.28 -60.83 16 16 Si 0.98 44.76 29.54 68.60 2.03 46.78 16 17 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 18 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 19 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 20 C 0.16 4.49 3.10 44.23 0.14 4.63 16 21 H 0.12 2.95 7.81 -2.38 -0.02 2.93 16 22 C 0.49 17.44 4.89 71.24 0.35 17.79 16 23 O -0.54 -24.22 15.34 29.81 0.46 -23.77 16 24 O -0.52 -15.99 13.42 -49.60 -0.67 -16.66 16 25 C -0.12 -2.33 5.07 30.67 0.16 -2.17 16 26 H 0.05 0.32 7.90 -2.39 -0.02 0.30 16 27 H 0.05 0.32 8.09 -2.38 -0.02 0.30 16 28 H 0.09 0.64 8.14 -2.39 -0.02 0.63 16 29 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.11 0.96 7.90 -2.39 -0.02 0.94 16 31 H 0.09 1.62 7.81 -2.39 -0.02 1.60 16 32 H 0.10 1.96 5.93 -2.38 -0.01 1.94 16 33 H 0.10 3.85 7.95 -2.39 -0.02 3.84 16 34 H 0.11 3.92 7.68 -2.39 -0.02 3.90 16 35 H -0.02 -1.30 8.10 -2.38 -0.02 -1.32 16 36 H -0.02 -1.66 8.10 -2.39 -0.02 -1.68 16 37 H 0.26 16.00 8.31 -92.71 -0.77 15.23 16 38 H 0.42 10.33 9.10 -74.06 -0.67 9.65 16 39 H 0.08 1.87 7.94 -2.38 -0.02 1.85 16 40 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -87.51 328.19 3.28 -84.23 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: 0.37 Total: 14.54 kcal Atomic # 6 Polarization: 8.40 SS G_CDS: 4.26 Total: 12.66 kcal Atomic # 7 Polarization: -79.42 SS G_CDS: -2.08 Total: -81.51 kcal Atomic # 8 Polarization: -75.41 SS G_CDS: -1.30 Total: -76.71 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Total: -87.51 3.28 -84.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606750575.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.621 kcal (2) G-P(sol) polarization free energy of solvation -87.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds