Wall clock time and date at job start Tue Mar 31 2020 06:11:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42903 * 114.00173 * 2 1 4 4 H 1.09001 * 109.45895 * 329.97174 * 3 2 1 5 5 C 1.53043 * 109.44955 * 89.94019 * 3 2 1 6 6 C 1.52759 * 109.38118 * 181.25624 * 5 3 2 7 7 N 1.46926 * 109.00850 * 305.58369 * 6 5 3 8 8 C 1.34773 * 120.63048 * 233.58642 * 7 6 5 9 9 O 1.21284 * 119.99675 * 175.61915 * 8 7 6 10 10 C 1.50693 * 120.00464 * 355.62426 * 8 7 6 11 11 C 1.53001 * 109.47478 * 179.97438 * 10 8 7 12 12 C 1.50699 * 109.47203 * 179.97438 * 11 10 8 13 13 H 1.08008 * 119.99854 * 0.02562 * 12 11 10 14 14 C 1.37875 * 120.00289 * 179.97438 * 12 11 10 15 15 N 1.31513 * 119.99533 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 120.00399 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47172 * 270.00298 * 16 14 12 18 18 H 1.48503 * 109.47110 * 30.00048 * 16 14 12 19 19 H 1.48501 * 109.47381 * 150.00059 * 16 14 12 20 20 C 1.46925 * 118.73464 * 53.31262 * 7 6 5 21 21 H 1.09000 * 109.58778 * 66.43567 * 20 7 6 22 22 C 1.50703 * 109.58650 * 186.70962 * 20 7 6 23 23 O 1.20829 * 119.99777 * 66.90275 * 22 20 7 24 24 O 1.34221 * 120.00472 * 246.90605 * 22 20 7 25 25 C 1.53040 * 109.45816 * 210.00381 * 3 2 1 26 26 H 1.08999 * 109.47066 * 59.99805 * 1 2 3 27 27 H 1.08998 * 109.47122 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46683 * 300.00250 * 1 2 3 29 29 H 1.08999 * 109.49105 * 301.33178 * 5 3 2 30 30 H 1.08998 * 109.49507 * 61.42317 * 5 3 2 31 31 H 1.09002 * 109.50936 * 185.70750 * 6 5 3 32 32 H 1.08997 * 109.43445 * 65.42552 * 6 5 3 33 33 H 1.09004 * 109.47100 * 59.99747 * 10 8 7 34 34 H 1.09005 * 109.47162 * 300.00254 * 10 8 7 35 35 H 1.09002 * 109.46558 * 60.00134 * 11 10 8 36 36 H 1.09000 * 109.46974 * 299.99715 * 11 10 8 37 37 H 0.97002 * 120.00685 * 359.97438 * 15 14 12 38 38 H 0.96702 * 117.00330 * 180.02562 * 24 22 20 39 39 H 1.08993 * 109.50533 * 58.67735 * 25 3 2 40 40 H 1.09005 * 109.52412 * 298.59131 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3451 1.9991 -0.5143 5 6 2.2162 1.7716 1.4431 6 6 2.8086 3.1797 1.4414 7 7 4.0305 3.1838 0.6254 8 6 5.1919 3.6445 1.1305 9 8 6.2100 3.5696 0.4757 10 6 5.2256 4.2528 2.5089 11 6 6.6540 4.6913 2.8381 12 6 6.6875 5.3001 4.2162 13 1 5.7807 5.3671 4.7992 14 6 7.8758 5.7706 4.7333 15 7 8.9800 5.6886 4.0236 16 14 7.9176 6.5246 6.4418 17 1 7.6687 7.9854 6.3445 18 1 6.8674 5.8987 7.2849 19 1 9.2497 6.2892 7.0545 20 6 3.9634 2.6704 -0.7496 21 1 3.3359 3.3254 -1.3540 22 6 5.3502 2.6165 -1.3369 23 8 6.1653 1.8439 -0.8914 24 8 5.6799 3.4267 -2.3550 25 6 3.3592 1.2629 -0.7216 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.2582 1.7792 1.9630 30 1 2.9008 1.0921 1.9507 31 1 3.0503 3.4742 2.4626 32 1 2.0850 3.8770 1.0193 33 1 4.8949 3.5149 3.2398 34 1 4.5631 5.1178 2.5406 35 1 6.9850 5.4291 2.1072 36 1 7.3161 3.8260 2.8065 37 1 8.9585 5.2967 3.1366 38 1 6.5810 3.3556 -2.6986 39 1 3.2150 0.9086 -1.7422 40 1 4.0334 0.5881 -0.1940 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606750576.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:59 Heat of formation + Delta-G solvation = -175.291614 kcal Electronic energy + Delta-G solvation = -23623.399717 eV Core-core repulsion = 20017.268058 eV Total energy + Delta-G solvation = -3606.131660 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.08487 -39.09944 -38.58101 -36.47407 -35.72940 -33.88378 -32.46135 -31.78721 -30.59704 -27.41236 -25.83768 -24.84570 -24.25677 -22.40815 -21.45213 -20.67726 -18.80950 -18.09906 -17.30029 -16.90280 -16.35402 -16.23559 -15.96903 -15.57814 -15.32194 -14.99987 -14.60255 -13.99676 -13.77600 -13.63312 -13.40557 -13.24068 -12.91689 -12.61829 -12.30087 -12.17297 -11.86559 -11.63665 -11.46186 -11.41224 -11.17284 -10.99241 -10.83136 -10.24858 -10.15391 -10.14040 -9.98486 -9.81045 -9.23771 -8.79140 -8.55312 -8.29194 -6.32647 -4.03286 2.27771 2.76453 3.05626 3.19330 3.44307 3.48594 3.52296 3.64110 4.36780 4.44830 4.56241 4.59238 4.73913 4.85271 4.96476 4.99489 5.03026 5.13291 5.18643 5.33476 5.40438 5.44332 5.45177 5.49174 5.59854 5.82365 5.94254 5.98847 6.01705 6.34123 6.65366 6.81988 6.85495 7.37745 7.48916 7.54324 8.13717 8.20444 8.44521 8.49990 8.90374 9.70741 11.08288 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.020120 B = 0.004313 C = 0.003687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1391.305050 B = 6490.400500 C = 7591.616028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.382 6.382 3 C 0.095 3.905 4 H 0.067 0.933 5 C -0.161 4.161 6 C 0.115 3.885 7 N -0.617 5.617 8 C 0.509 3.491 9 O -0.507 6.507 10 C -0.116 4.116 11 C 0.024 3.976 12 C -0.609 4.609 13 H 0.050 0.950 14 C 0.015 3.985 15 N -0.910 5.910 16 Si 1.073 2.927 17 H -0.288 1.288 18 H -0.289 1.289 19 H -0.284 1.284 20 C 0.160 3.840 21 H 0.099 0.901 22 C 0.494 3.506 23 O -0.493 6.493 24 O -0.521 6.521 25 C -0.122 4.122 26 H 0.042 0.958 27 H 0.086 0.914 28 H 0.043 0.957 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.103 0.897 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.014 0.986 36 H 0.016 0.984 37 H 0.272 0.728 38 H 0.411 0.589 39 H 0.086 0.914 40 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.046 -7.704 -10.527 23.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.300 6.300 3 C 0.038 3.962 4 H 0.085 0.915 5 C -0.199 4.199 6 C -0.007 4.007 7 N -0.357 5.357 8 C 0.300 3.700 9 O -0.382 6.382 10 C -0.156 4.156 11 C -0.014 4.014 12 C -0.647 4.647 13 H 0.068 0.932 14 C -0.189 4.189 15 N -0.546 5.546 16 Si 0.902 3.098 17 H -0.215 1.215 18 H -0.215 1.215 19 H -0.210 1.210 20 C 0.055 3.945 21 H 0.117 0.883 22 C 0.336 3.664 23 O -0.379 6.379 24 O -0.334 6.334 25 C -0.160 4.160 26 H 0.060 0.940 27 H 0.104 0.896 28 H 0.061 0.939 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.121 0.879 32 H 0.091 0.909 33 H 0.102 0.898 34 H 0.103 0.897 35 H 0.032 0.968 36 H 0.034 0.966 37 H 0.083 0.917 38 H 0.270 0.730 39 H 0.104 0.896 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -18.513 -7.397 -9.472 22.072 hybrid contribution -0.810 -0.559 -1.347 1.668 sum -19.323 -7.956 -10.819 23.531 Atomic orbital electron populations 1.22809 0.80945 1.02842 1.00029 1.87944 1.19704 1.27351 1.95037 1.21995 0.93990 0.84885 0.95373 0.91542 1.22419 1.02468 0.97493 0.97550 1.21646 0.85612 0.96406 0.97085 1.48389 1.10866 1.64506 1.11903 1.21836 0.81514 0.76407 0.90232 1.90696 1.32488 1.55032 1.59942 1.21744 1.04063 1.00050 0.89715 1.19041 0.88930 0.96483 0.96899 1.22023 0.97090 1.44342 1.01276 0.93191 1.25856 0.92232 0.95830 1.04998 1.70699 1.28922 1.42080 1.12885 0.83493 0.75702 0.76105 0.74539 1.21479 1.21494 1.20984 1.20456 0.92281 0.96702 0.85057 0.88314 1.22174 0.89432 0.77841 0.77003 1.90723 1.50113 1.39316 1.57729 1.84381 1.38903 1.61068 1.49020 1.21901 0.96404 0.95188 1.02540 0.93978 0.89587 0.93873 0.89985 0.89973 0.87895 0.90934 0.89804 0.89709 0.96766 0.96615 0.91684 0.73022 0.89578 0.88971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.82 101.05 1.09 1.29 16 2 O -0.38 -3.83 10.35 -35.23 -0.36 -4.20 16 3 C 0.10 0.89 2.57 -26.69 -0.07 0.82 16 4 H 0.07 0.48 7.79 -51.93 -0.40 0.08 16 5 C -0.16 -1.49 5.68 -26.83 -0.15 -1.64 16 6 C 0.11 1.19 6.30 -3.93 -0.02 1.16 16 7 N -0.62 -9.01 2.98 -166.80 -0.50 -9.51 16 8 C 0.51 10.03 7.57 -10.99 -0.08 9.95 16 9 O -0.51 -12.03 11.56 -22.02 -0.25 -12.28 16 10 C -0.12 -2.37 4.03 -27.89 -0.11 -2.49 16 11 C 0.02 0.65 3.57 -27.88 -0.10 0.55 16 12 C -0.61 -17.52 9.11 -34.44 -0.31 -17.83 16 13 H 0.05 1.36 7.74 -52.48 -0.41 0.96 16 14 C 0.02 0.45 5.46 -17.82 -0.10 0.36 16 15 N -0.91 -29.04 13.65 55.43 0.76 -28.28 16 16 Si 1.07 25.55 29.90 -169.99 -5.08 20.47 16 17 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 C 0.16 2.11 3.35 -68.75 -0.23 1.88 16 21 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 22 C 0.49 8.23 4.85 36.01 0.17 8.40 16 23 O -0.49 -10.21 15.33 -26.94 -0.41 -10.62 16 24 O -0.52 -7.40 13.42 -42.08 -0.56 -7.96 16 25 C -0.12 -1.38 4.94 -26.61 -0.13 -1.52 16 26 H 0.04 0.22 8.08 -51.93 -0.42 -0.20 16 27 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.04 0.24 7.84 -51.93 -0.41 -0.17 16 29 H 0.08 0.58 7.84 -51.93 -0.41 0.18 16 30 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.10 1.07 5.96 -51.93 -0.31 0.76 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 1.58 7.51 -51.93 -0.39 1.19 16 34 H 0.08 1.56 8.09 -51.93 -0.42 1.14 16 35 H 0.01 0.41 7.97 -51.93 -0.41 0.00 16 36 H 0.02 0.46 7.97 -51.93 -0.41 0.05 16 37 H 0.27 8.86 7.22 -40.82 -0.29 8.57 16 38 H 0.41 4.50 9.10 45.56 0.41 4.91 16 39 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.09 1.30 7.85 -51.93 -0.41 0.89 16 LS Contribution 328.44 15.07 4.95 4.95 Total: -1.00 -38.30 328.44 -6.70 -45.01 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -5.19 Total: 1.50 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: -0.05 Total: 0.93 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: 0.26 Total: -37.79 kcal Atomic # 8 Polarization: -33.47 SS G_CDS: -1.60 Total: -35.07 kcal Atomic # 14 Polarization: 25.55 SS G_CDS: -5.08 Total: 20.47 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -38.30 -6.70 -45.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606750576.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.285 kcal (2) G-P(sol) polarization free energy of solvation -38.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds