Wall clock time and date at job start Tue Mar 31 2020 06:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42893 * 114.00146 * 2 1 4 4 H 1.08999 * 109.45946 * 29.97500 * 3 2 1 5 5 C 1.53044 * 109.46041 * 270.00014 * 3 2 1 6 6 C 1.53198 * 109.31117 * 178.62954 * 5 3 2 7 7 N 1.46921 * 108.77548 * 54.63198 * 6 5 3 8 8 C 1.34785 * 120.62675 * 126.37018 * 7 6 5 9 9 O 1.21286 * 119.99861 * 173.95727 * 8 7 6 10 10 C 1.50696 * 120.00110 * 353.95300 * 8 7 6 11 11 C 1.52992 * 109.47340 * 180.02562 * 10 8 7 12 12 C 1.50700 * 109.47598 * 180.02562 * 11 10 8 13 13 H 1.08001 * 119.99566 * 359.97438 * 12 11 10 14 14 C 1.37869 * 120.00618 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00319 * 180.02562 * 14 12 11 16 16 Si 1.86805 * 119.99762 * 359.97438 * 14 12 11 17 17 H 1.48502 * 109.46809 * 90.00039 * 16 14 12 18 18 H 1.48505 * 109.47138 * 209.99790 * 16 14 12 19 19 H 1.48494 * 109.46926 * 330.00121 * 16 14 12 20 20 C 1.46927 * 118.74516 * 306.64819 * 7 6 5 21 21 H 1.09007 * 109.58071 * 293.56834 * 20 7 6 22 22 C 1.50693 * 109.58943 * 173.14489 * 20 7 6 23 23 O 1.20835 * 120.00072 * 298.96507 * 22 20 7 24 24 O 1.34228 * 120.00608 * 118.96881 * 22 20 7 25 25 C 1.52761 * 109.00664 * 53.30362 * 20 7 6 26 26 H 1.08997 * 109.46474 * 299.99830 * 1 2 3 27 27 H 1.08998 * 109.46879 * 59.99848 * 1 2 3 28 28 H 1.09001 * 109.46953 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.49577 * 58.68143 * 5 3 2 30 30 H 1.08999 * 109.49927 * 298.58035 * 5 3 2 31 31 H 1.09005 * 109.58496 * 294.85146 * 6 5 3 32 32 H 1.08988 * 109.70259 * 174.49463 * 6 5 3 33 33 H 1.09003 * 109.47024 * 59.99944 * 10 8 7 34 34 H 1.09001 * 109.47564 * 300.00473 * 10 8 7 35 35 H 1.09006 * 109.47189 * 299.99904 * 11 10 8 36 36 H 1.09003 * 109.47224 * 59.99924 * 11 10 8 37 37 H 0.97004 * 119.99840 * 180.02562 * 15 14 12 38 38 H 0.96698 * 117.00497 * 180.02562 * 24 22 20 39 39 H 1.09010 * 109.56167 * 185.55756 * 25 20 7 40 40 H 1.08996 * 109.38330 * 65.52456 * 25 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3447 1.9992 0.5135 5 6 2.2177 1.7712 -1.4430 6 6 2.8091 3.1844 -1.4392 7 7 4.0313 3.1833 -0.6238 8 6 5.1934 3.6439 -1.1279 9 8 6.1685 3.7403 -0.4131 10 6 5.2812 4.0388 -2.5795 11 6 6.6986 4.5227 -2.8916 12 6 6.7862 4.9182 -4.3431 13 1 5.9178 4.8326 -4.9795 14 6 7.9749 5.3894 -4.8588 15 7 8.0512 5.7351 -6.1254 16 14 9.4767 5.5382 -3.7579 17 1 10.2484 4.2702 -3.7994 18 1 10.3322 6.6541 -4.2358 19 1 9.0435 5.8087 -2.3636 20 6 3.9641 2.6650 0.7494 21 1 3.3381 3.3190 1.3565 22 6 5.3515 2.6032 1.3345 23 8 6.1942 1.9074 0.8189 24 8 5.6512 3.3210 2.4284 25 6 3.3586 1.2628 0.7228 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.2603 1.7789 -1.9639 30 1 2.9027 1.0915 -1.9498 31 1 2.0869 3.8815 -1.0141 32 1 3.0502 3.4846 -2.4588 33 1 4.5705 4.8402 -2.7816 34 1 5.0455 3.1779 -3.2052 35 1 6.9346 5.3836 -2.2660 36 1 7.4090 3.7210 -2.6896 37 1 8.8877 6.0662 -6.4882 38 1 6.5542 3.2492 2.7668 39 1 3.2132 0.9087 1.7435 40 1 4.0327 0.5875 0.1960 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606750577.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:01 Heat of formation + Delta-G solvation = -168.497807 kcal Electronic energy + Delta-G solvation = -23668.771172 eV Core-core repulsion = 20062.934114 eV Total energy + Delta-G solvation = -3605.837058 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.12098 -39.12518 -38.59691 -36.48354 -35.77790 -33.61668 -32.44850 -31.77686 -31.03138 -27.50189 -26.32088 -25.16838 -24.26263 -22.14579 -21.43568 -20.32476 -18.82449 -18.15356 -17.36327 -16.95684 -16.33942 -16.20749 -16.02423 -15.54560 -15.33815 -15.02343 -14.58745 -14.18156 -13.90105 -13.62312 -13.42332 -13.12990 -12.93586 -12.60198 -12.54420 -12.36750 -11.89009 -11.58310 -11.50100 -11.34358 -11.22003 -11.00064 -10.95266 -10.29015 -10.17419 -10.03726 -9.84145 -9.79004 -9.26434 -9.18199 -8.78090 -8.50877 -6.03627 -4.02513 2.25522 2.76425 3.00619 3.14503 3.38862 3.45096 3.52147 3.56038 4.37070 4.45600 4.51090 4.59438 4.73730 4.84120 4.96694 5.00523 5.03115 5.12534 5.17852 5.32115 5.34314 5.39848 5.40982 5.49095 5.60196 5.80624 5.94706 5.97107 6.02096 6.33199 6.61640 6.77083 6.84697 7.34896 7.36241 7.41080 7.77305 8.12660 8.39617 8.52188 8.98520 9.59566 11.09057 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.020749 B = 0.004625 C = 0.003948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.148505 B = 6052.670164 C = 7091.305327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.382 6.382 3 C 0.095 3.905 4 H 0.066 0.934 5 C -0.161 4.161 6 C 0.115 3.885 7 N -0.618 5.618 8 C 0.512 3.488 9 O -0.512 6.512 10 C -0.115 4.115 11 C 0.001 3.999 12 C -0.525 4.525 13 H 0.073 0.927 14 C 0.070 3.930 15 N -0.903 5.903 16 Si 0.877 3.123 17 H -0.276 1.276 18 H -0.288 1.288 19 H -0.262 1.262 20 C 0.161 3.839 21 H 0.099 0.901 22 C 0.495 3.505 23 O -0.494 6.494 24 O -0.520 6.520 25 C -0.123 4.123 26 H 0.041 0.959 27 H 0.043 0.957 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.105 0.895 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.023 0.977 36 H 0.020 0.980 37 H 0.263 0.737 38 H 0.411 0.589 39 H 0.086 0.914 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.655 -8.139 15.596 24.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.300 6.300 3 C 0.038 3.962 4 H 0.085 0.915 5 C -0.200 4.200 6 C -0.008 4.008 7 N -0.357 5.357 8 C 0.303 3.697 9 O -0.387 6.387 10 C -0.155 4.155 11 C -0.037 4.037 12 C -0.563 4.563 13 H 0.091 0.909 14 C -0.131 4.131 15 N -0.542 5.542 16 Si 0.704 3.296 17 H -0.202 1.202 18 H -0.214 1.214 19 H -0.186 1.186 20 C 0.056 3.944 21 H 0.117 0.883 22 C 0.336 3.664 23 O -0.380 6.380 24 O -0.332 6.332 25 C -0.161 4.161 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.104 0.896 29 H 0.100 0.900 30 H 0.102 0.898 31 H 0.091 0.909 32 H 0.123 0.877 33 H 0.106 0.894 34 H 0.107 0.893 35 H 0.041 0.959 36 H 0.039 0.961 37 H 0.073 0.927 38 H 0.269 0.731 39 H 0.105 0.895 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -17.025 -8.331 15.539 24.510 hybrid contribution 1.114 0.247 0.601 1.290 sum -15.911 -8.084 16.140 24.063 Atomic orbital electron populations 1.22810 0.80922 1.02847 1.00043 1.87940 1.19722 1.27346 1.95041 1.21991 0.93910 0.84903 0.95437 0.91550 1.22496 1.02555 0.97464 0.97436 1.21758 0.85474 0.96368 0.97189 1.48351 1.10794 1.64608 1.11951 1.21769 0.80861 0.75134 0.91923 1.90654 1.35764 1.52598 1.59691 1.21682 1.03348 1.02121 0.88343 1.19390 0.90187 0.96760 0.97323 1.21073 0.98417 1.43546 0.93224 0.90888 1.24949 0.98777 0.94542 0.94840 1.69909 1.26796 1.44472 1.12993 0.86803 0.82946 0.77922 0.81923 1.20197 1.21421 1.18629 1.20316 0.92153 0.96714 0.85202 0.88314 1.22225 0.89773 0.76735 0.77663 1.90737 1.48671 1.40297 1.58327 1.84384 1.38784 1.66265 1.43815 1.21839 0.96548 0.95182 1.02577 0.93994 0.93830 0.89594 0.90003 0.89850 0.90880 0.87679 0.89357 0.89271 0.95863 0.96137 0.92696 0.73062 0.89503 0.89042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.82 101.05 1.09 1.28 16 2 O -0.38 -3.71 10.35 -35.23 -0.36 -4.08 16 3 C 0.10 0.85 2.57 -26.69 -0.07 0.78 16 4 H 0.07 0.46 7.79 -51.93 -0.40 0.05 16 5 C -0.16 -1.43 5.70 -26.61 -0.15 -1.58 16 6 C 0.11 1.13 6.35 -3.71 -0.02 1.10 16 7 N -0.62 -8.61 2.98 -166.79 -0.50 -9.11 16 8 C 0.51 9.62 7.38 -10.98 -0.08 9.54 16 9 O -0.51 -11.55 11.75 -21.01 -0.25 -11.80 16 10 C -0.12 -2.25 4.00 -27.89 -0.11 -2.36 16 11 C 0.00 0.03 3.33 -27.89 -0.09 -0.06 16 12 C -0.52 -15.05 9.66 -34.44 -0.33 -15.38 16 13 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 14 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 15 N -0.90 -28.07 13.96 55.43 0.77 -27.29 16 16 Si 0.88 22.95 27.47 -169.99 -4.67 18.28 16 17 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 18 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 19 H -0.26 -6.84 6.54 56.52 0.37 -6.47 16 20 C 0.16 2.02 3.33 -68.98 -0.23 1.79 16 21 H 0.10 0.99 8.14 -51.92 -0.42 0.56 16 22 C 0.49 7.85 4.88 36.00 0.18 8.02 16 23 O -0.49 -9.85 15.33 -26.93 -0.41 -10.26 16 24 O -0.52 -6.91 13.42 -41.12 -0.55 -7.47 16 25 C -0.12 -1.32 4.95 -26.83 -0.13 -1.45 16 26 H 0.04 0.21 8.08 -51.93 -0.42 -0.20 16 27 H 0.04 0.23 7.85 -51.93 -0.41 -0.17 16 28 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.56 7.85 -51.93 -0.41 0.16 16 30 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.11 1.04 5.93 -51.94 -0.31 0.73 16 33 H 0.09 1.53 7.69 -51.93 -0.40 1.13 16 34 H 0.09 1.63 7.94 -51.93 -0.41 1.21 16 35 H 0.02 0.61 7.15 -51.93 -0.37 0.24 16 36 H 0.02 0.55 7.53 -51.93 -0.39 0.16 16 37 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 38 H 0.41 4.10 9.10 45.56 0.41 4.52 16 39 H 0.09 0.79 8.14 -51.92 -0.42 0.37 16 40 H 0.09 1.21 7.92 -51.93 -0.41 0.80 16 LS Contribution 326.28 15.07 4.92 4.92 Total: -1.00 -37.73 326.28 -6.32 -44.05 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: -5.22 Total: -0.92 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: -0.05 Total: 3.68 kcal Atomic # 7 Polarization: -36.68 SS G_CDS: 0.28 Total: -36.40 kcal Atomic # 8 Polarization: -32.03 SS G_CDS: -1.58 Total: -33.61 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -4.67 Total: 18.28 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -37.73 -6.32 -44.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606750577.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.446 kcal (2) G-P(sol) polarization free energy of solvation -37.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds