Wall clock time and date at job start Tue Mar 31 2020 06:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42893 * 114.00146 * 2 1 4 4 H 1.08999 * 109.45946 * 29.97500 * 3 2 1 5 5 C 1.53044 * 109.46041 * 270.00014 * 3 2 1 6 6 C 1.53198 * 109.31117 * 178.62954 * 5 3 2 7 7 N 1.46921 * 108.77548 * 54.63198 * 6 5 3 8 8 C 1.34785 * 120.62675 * 126.37018 * 7 6 5 9 9 O 1.21286 * 119.99861 * 173.95727 * 8 7 6 10 10 C 1.50696 * 120.00110 * 353.95300 * 8 7 6 11 11 C 1.52992 * 109.47340 * 180.02562 * 10 8 7 12 12 C 1.50700 * 109.47598 * 180.02562 * 11 10 8 13 13 H 1.08001 * 119.99566 * 359.97438 * 12 11 10 14 14 C 1.37869 * 120.00618 * 179.97438 * 12 11 10 15 15 N 1.31516 * 120.00319 * 180.02562 * 14 12 11 16 16 Si 1.86805 * 119.99762 * 359.97438 * 14 12 11 17 17 H 1.48502 * 109.46809 * 90.00039 * 16 14 12 18 18 H 1.48505 * 109.47138 * 209.99790 * 16 14 12 19 19 H 1.48494 * 109.46926 * 330.00121 * 16 14 12 20 20 C 1.46927 * 118.74516 * 306.64819 * 7 6 5 21 21 H 1.09007 * 109.58071 * 293.56834 * 20 7 6 22 22 C 1.50693 * 109.58943 * 173.14489 * 20 7 6 23 23 O 1.20835 * 120.00072 * 298.96507 * 22 20 7 24 24 O 1.34228 * 120.00608 * 118.96881 * 22 20 7 25 25 C 1.52761 * 109.00664 * 53.30362 * 20 7 6 26 26 H 1.08997 * 109.46474 * 299.99830 * 1 2 3 27 27 H 1.08998 * 109.46879 * 59.99848 * 1 2 3 28 28 H 1.09001 * 109.46953 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.49577 * 58.68143 * 5 3 2 30 30 H 1.08999 * 109.49927 * 298.58035 * 5 3 2 31 31 H 1.09005 * 109.58496 * 294.85146 * 6 5 3 32 32 H 1.08988 * 109.70259 * 174.49463 * 6 5 3 33 33 H 1.09003 * 109.47024 * 59.99944 * 10 8 7 34 34 H 1.09001 * 109.47564 * 300.00473 * 10 8 7 35 35 H 1.09006 * 109.47189 * 299.99904 * 11 10 8 36 36 H 1.09003 * 109.47224 * 59.99924 * 11 10 8 37 37 H 0.97004 * 119.99840 * 180.02562 * 15 14 12 38 38 H 0.96698 * 117.00497 * 180.02562 * 24 22 20 39 39 H 1.09010 * 109.56167 * 185.55756 * 25 20 7 40 40 H 1.08996 * 109.38330 * 65.52456 * 25 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3447 1.9992 0.5135 5 6 2.2177 1.7712 -1.4430 6 6 2.8091 3.1844 -1.4392 7 7 4.0313 3.1833 -0.6238 8 6 5.1934 3.6439 -1.1279 9 8 6.1685 3.7403 -0.4131 10 6 5.2812 4.0388 -2.5795 11 6 6.6986 4.5227 -2.8916 12 6 6.7862 4.9182 -4.3431 13 1 5.9178 4.8326 -4.9795 14 6 7.9749 5.3894 -4.8588 15 7 8.0512 5.7351 -6.1254 16 14 9.4767 5.5382 -3.7579 17 1 10.2484 4.2702 -3.7994 18 1 10.3322 6.6541 -4.2358 19 1 9.0435 5.8087 -2.3636 20 6 3.9641 2.6650 0.7494 21 1 3.3381 3.3190 1.3565 22 6 5.3515 2.6032 1.3345 23 8 6.1942 1.9074 0.8189 24 8 5.6512 3.3210 2.4284 25 6 3.3586 1.2628 0.7228 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.2603 1.7789 -1.9639 30 1 2.9027 1.0915 -1.9498 31 1 2.0869 3.8815 -1.0141 32 1 3.0502 3.4846 -2.4588 33 1 4.5705 4.8402 -2.7816 34 1 5.0455 3.1779 -3.2052 35 1 6.9346 5.3836 -2.2660 36 1 7.4090 3.7210 -2.6896 37 1 8.8877 6.0662 -6.4882 38 1 6.5542 3.2492 2.7668 39 1 3.2132 0.9087 1.7435 40 1 4.0327 0.5875 0.1960 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606750577.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:00 Heat of formation + Delta-G solvation = -196.532945 kcal Electronic energy + Delta-G solvation = -23669.986867 eV Core-core repulsion = 20062.934114 eV Total energy + Delta-G solvation = -3607.052753 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.28176 -40.24424 -39.58960 -37.47800 -36.97285 -35.63016 -33.81893 -32.88531 -32.50432 -28.59568 -27.60539 -26.20791 -25.12664 -23.75451 -22.37840 -21.73047 -20.07868 -19.39823 -18.99036 -18.18874 -17.53171 -17.35368 -17.12807 -16.50357 -16.31355 -16.17423 -15.96136 -15.65571 -15.05688 -14.99410 -14.68617 -14.42368 -14.17512 -13.89119 -13.73546 -13.39357 -13.30704 -12.97174 -12.64540 -12.45001 -12.36011 -12.14301 -12.01128 -11.97180 -11.82099 -11.69316 -11.47567 -11.40931 -10.80919 -10.74570 -10.47094 -9.88431 -8.34171 -6.36493 1.11045 1.29521 1.31498 1.46197 1.48238 1.91576 2.00245 2.31878 2.83141 3.01568 3.57779 3.66639 3.79752 3.81984 4.01401 4.08687 4.27743 4.31196 4.33778 4.39652 4.45753 4.57214 4.60867 4.68821 4.72837 4.82668 4.95298 4.97184 5.03876 5.24427 5.27176 5.37735 5.38883 5.57041 5.70819 6.12908 6.21845 6.29370 6.68976 6.95125 7.11910 7.28945 8.81288 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.020749 B = 0.004625 C = 0.003948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.148505 B = 6052.670164 C = 7091.305327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.407 6.407 3 C 0.099 3.901 4 H 0.100 0.900 5 C -0.156 4.156 6 C 0.106 3.894 7 N -0.608 5.608 8 C 0.508 3.492 9 O -0.559 6.559 10 C -0.108 4.108 11 C 0.007 3.993 12 C -0.527 4.527 13 H 0.055 0.945 14 C 0.018 3.982 15 N -0.940 5.940 16 Si 0.934 3.066 17 H -0.274 1.274 18 H -0.274 1.274 19 H -0.264 1.264 20 C 0.160 3.840 21 H 0.139 0.861 22 C 0.490 3.510 23 O -0.544 6.544 24 O -0.513 6.513 25 C -0.118 4.118 26 H 0.057 0.943 27 H 0.055 0.945 28 H 0.090 0.910 29 H 0.109 0.891 30 H 0.055 0.945 31 H 0.113 0.887 32 H 0.103 0.897 33 H 0.113 0.887 34 H 0.099 0.901 35 H 0.010 0.990 36 H -0.001 1.001 37 H 0.268 0.732 38 H 0.422 0.578 39 H 0.104 0.896 40 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.188 -7.886 17.095 27.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.327 6.327 3 C 0.041 3.959 4 H 0.118 0.882 5 C -0.195 4.195 6 C -0.014 4.014 7 N -0.345 5.345 8 C 0.299 3.701 9 O -0.438 6.438 10 C -0.148 4.148 11 C -0.031 4.031 12 C -0.565 4.565 13 H 0.074 0.926 14 C -0.180 4.180 15 N -0.581 5.581 16 Si 0.759 3.241 17 H -0.200 1.200 18 H -0.199 1.199 19 H -0.189 1.189 20 C 0.056 3.944 21 H 0.156 0.844 22 C 0.333 3.667 23 O -0.434 6.434 24 O -0.326 6.326 25 C -0.156 4.156 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.109 0.891 29 H 0.128 0.872 30 H 0.074 0.926 31 H 0.131 0.869 32 H 0.121 0.879 33 H 0.131 0.869 34 H 0.117 0.883 35 H 0.029 0.971 36 H 0.017 0.983 37 H 0.077 0.923 38 H 0.283 0.717 39 H 0.122 0.878 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -19.625 -8.082 17.055 27.227 hybrid contribution 1.798 0.116 0.155 1.808 sum -17.827 -7.967 17.210 26.028 Atomic orbital electron populations 1.23015 0.79131 1.03743 1.01369 1.87915 1.21736 1.27842 1.95163 1.21991 0.93209 0.85487 0.95176 0.88230 1.22465 1.03114 0.96080 0.97821 1.22146 0.84368 0.97970 0.96907 1.48308 1.10524 1.62711 1.12951 1.21480 0.81761 0.75591 0.91256 1.90636 1.37718 1.54946 1.60545 1.21485 1.00177 1.03285 0.89814 1.19207 0.93560 0.95536 0.94794 1.21384 0.97745 1.42615 0.94712 0.92635 1.25719 1.01666 0.94623 0.96009 1.70006 1.27816 1.45775 1.14464 0.85902 0.79934 0.78278 0.79992 1.19965 1.19944 1.18895 1.20656 0.90776 0.98539 0.84413 0.84399 1.22984 0.90706 0.75567 0.77410 1.90711 1.50567 1.42349 1.59774 1.84361 1.39886 1.65384 1.42999 1.21797 0.97033 0.93222 1.03546 0.92420 0.92649 0.89121 0.87225 0.92578 0.86907 0.87870 0.86902 0.88269 0.97117 0.98281 0.92319 0.71713 0.87797 0.92512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 10.82 113.37 1.23 1.44 16 2 O -0.41 -6.83 10.35 -148.98 -1.54 -8.38 16 3 C 0.10 1.41 2.57 30.62 0.08 1.49 16 4 H 0.10 0.81 7.79 -2.39 -0.02 0.79 16 5 C -0.16 -2.31 5.70 30.68 0.17 -2.13 16 6 C 0.11 1.72 6.35 86.37 0.55 2.27 16 7 N -0.61 -15.69 2.98 -799.98 -2.38 -18.07 16 8 C 0.51 18.81 7.38 87.65 0.65 19.46 16 9 O -0.56 -25.52 11.75 22.35 0.26 -25.25 16 10 C -0.11 -4.16 4.00 29.84 0.12 -4.04 16 11 C 0.01 0.36 3.33 29.85 0.10 0.46 16 12 C -0.53 -30.60 9.66 25.60 0.25 -30.35 16 13 H 0.06 3.34 7.99 -2.91 -0.02 3.32 16 14 C 0.02 1.07 5.47 84.65 0.46 1.54 16 15 N -0.94 -59.06 13.96 21.44 0.30 -58.76 16 16 Si 0.93 47.93 27.47 68.60 1.88 49.82 16 17 H -0.27 -13.88 7.11 99.48 0.71 -13.17 16 18 H -0.27 -13.35 7.11 99.48 0.71 -12.64 16 19 H -0.26 -13.58 6.54 99.48 0.65 -12.93 16 20 C 0.16 3.65 3.33 44.08 0.15 3.79 16 21 H 0.14 2.13 8.14 -2.38 -0.02 2.11 16 22 C 0.49 15.27 4.88 71.23 0.35 15.62 16 23 O -0.54 -22.30 15.33 29.75 0.46 -21.85 16 24 O -0.51 -13.09 13.42 -49.61 -0.67 -13.76 16 25 C -0.12 -2.30 4.95 30.53 0.15 -2.15 16 26 H 0.06 0.35 8.08 -2.39 -0.02 0.33 16 27 H 0.05 0.38 7.85 -2.39 -0.02 0.36 16 28 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.11 1.05 7.85 -2.39 -0.02 1.03 16 30 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.11 1.05 8.14 -2.38 -0.02 1.03 16 32 H 0.10 1.74 5.93 -2.39 -0.01 1.73 16 33 H 0.11 3.73 7.69 -2.39 -0.02 3.71 16 34 H 0.10 3.57 7.94 -2.39 -0.02 3.55 16 35 H 0.01 0.56 7.15 -2.38 -0.02 0.54 16 36 H 0.00 -0.07 7.53 -2.39 -0.02 -0.09 16 37 H 0.27 15.74 8.31 -92.71 -0.77 14.97 16 38 H 0.42 8.28 9.10 -74.06 -0.67 7.61 16 39 H 0.10 1.65 8.14 -2.38 -0.02 1.63 16 40 H 0.06 1.52 7.92 -2.39 -0.02 1.50 16 Total: -1.00 -84.51 326.28 2.88 -81.63 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: 0.32 Total: 7.22 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: 4.25 Total: 7.40 kcal Atomic # 7 Polarization: -74.75 SS G_CDS: -2.08 Total: -76.83 kcal Atomic # 8 Polarization: -67.74 SS G_CDS: -1.49 Total: -69.23 kcal Atomic # 14 Polarization: 47.93 SS G_CDS: 1.88 Total: 49.82 kcal Total: -84.51 2.88 -81.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606750577.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.907 kcal (2) G-P(sol) polarization free energy of solvation -84.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds