Wall clock time and date at job start Tue Mar 31 2020 05:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42906 * 113.99895 * 2 1 4 4 C 1.52998 * 109.47188 * 179.97438 * 3 2 1 5 5 C 1.50703 * 109.99895 * 301.09636 * 4 3 2 6 6 O 1.20828 * 119.99911 * 23.90143 * 5 4 3 7 7 O 1.34223 * 119.99842 * 203.90516 * 5 4 3 8 8 C 1.54323 * 109.88312 * 62.18811 * 4 3 2 9 9 C 1.55166 * 102.94020 * 97.22280 * 8 4 3 10 10 C 1.54910 * 101.57827 * 35.50173 * 9 8 4 11 11 N 1.47023 * 109.87983 * 179.97438 * 4 3 2 12 12 C 1.34775 * 125.64694 * 59.78890 * 11 4 3 13 13 O 1.21273 * 120.00152 * 359.71620 * 12 11 4 14 14 C 1.50705 * 119.99474 * 179.71310 * 12 11 4 15 15 H 1.08989 * 109.47132 * 59.99991 * 14 12 11 16 16 C 1.53001 * 109.47022 * 299.99806 * 14 12 11 17 17 C 1.50701 * 109.46854 * 180.02562 * 14 12 11 18 18 H 1.08000 * 120.00152 * 5.48091 * 17 14 12 19 19 C 1.37878 * 120.00105 * 185.47927 * 17 14 12 20 20 N 1.31514 * 119.99682 * 9.65744 * 19 17 14 21 21 Si 1.86801 * 119.99908 * 189.65486 * 19 17 14 22 22 H 1.48495 * 109.46994 * 85.00099 * 21 19 17 23 23 H 1.48503 * 109.46977 * 204.99465 * 21 19 17 24 24 H 1.48496 * 109.47358 * 324.99375 * 21 19 17 25 25 H 1.08997 * 109.47027 * 60.00231 * 1 2 3 26 26 H 1.09007 * 109.46936 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47483 * 300.00001 * 1 2 3 28 28 H 1.09000 * 109.46899 * 59.99694 * 3 2 1 29 29 H 1.08998 * 109.46454 * 300.00193 * 3 2 1 30 30 H 0.96703 * 117.00047 * 179.97438 * 7 5 4 31 31 H 1.09002 * 110.72080 * 338.86713 * 8 4 3 32 32 H 1.08994 * 110.87381 * 215.65924 * 8 4 3 33 33 H 1.08994 * 111.00634 * 277.42932 * 9 8 4 34 34 H 1.08998 * 111.03235 * 153.58820 * 9 8 4 35 35 H 1.09005 * 110.36595 * 204.14696 * 10 9 8 36 36 H 1.09007 * 110.36894 * 81.82884 * 10 9 8 37 37 H 1.09002 * 109.46781 * 185.91822 * 16 14 12 38 38 H 1.09001 * 109.47316 * 305.91754 * 16 14 12 39 39 H 1.08998 * 109.47339 * 65.92422 * 16 14 12 40 40 H 0.97000 * 119.99502 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 6 3.9910 0.4152 1.2136 6 8 3.2354 -0.3527 1.7608 7 8 5.2361 0.5829 1.6862 8 6 4.0057 0.4681 -1.2826 9 6 4.3973 1.6454 -2.2145 10 6 4.9837 2.6611 -1.2025 11 7 4.1430 2.5236 0.0000 12 6 3.9653 3.4672 0.9458 13 8 3.2480 3.2440 1.8979 14 6 4.6582 4.7996 0.8203 15 1 4.3424 5.2879 -0.1015 16 6 6.1730 4.5860 0.7911 17 6 4.2963 5.6669 1.9984 18 1 3.7036 5.2619 2.8053 19 6 4.7219 6.9775 2.0462 20 7 5.2768 7.5276 0.9883 21 14 4.5103 7.9716 3.6134 22 1 5.6574 7.7152 4.5209 23 1 4.4573 9.4176 3.2790 24 1 3.2480 7.5726 4.2861 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.6885 1.8464 0.8900 29 1 1.6885 1.8463 -0.8900 30 1 5.4825 0.0678 2.4666 31 1 3.1943 -0.1149 -1.7182 32 1 4.8685 -0.1661 -1.0793 33 1 3.5204 2.0552 -2.7157 34 1 5.1505 1.3368 -2.9393 35 1 4.9156 3.6742 -1.5992 36 1 6.0196 2.4120 -0.9719 37 1 6.6765 5.5526 0.8064 38 1 6.4749 4.0052 1.6628 39 1 6.4467 4.0480 -0.1165 40 1 5.5758 8.4497 1.0218 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606830995.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:41 Heat of formation + Delta-G solvation = -163.355965 kcal Electronic energy + Delta-G solvation = -24556.324202 eV Core-core repulsion = 20950.710111 eV Total energy + Delta-G solvation = -3605.614091 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.85775 -38.92662 -37.68683 -36.69620 -35.71068 -33.84122 -31.72431 -30.92268 -29.87199 -26.86263 -25.20430 -24.98815 -24.34973 -22.72073 -21.67804 -20.25795 -18.99029 -17.47776 -16.77491 -16.47310 -16.27118 -15.83129 -15.35843 -15.28997 -15.08191 -14.60273 -14.23435 -13.97850 -13.42196 -13.26209 -13.07791 -12.70637 -12.48828 -12.40685 -11.94955 -11.70217 -11.51608 -11.31088 -11.16136 -11.09439 -10.99878 -10.83700 -10.71946 -10.56264 -10.36842 -10.22232 -9.98822 -9.48998 -9.04934 -8.64255 -8.38992 -8.33192 -6.09154 -4.07751 2.41924 3.12984 3.29586 3.33164 3.38587 3.45923 3.56374 4.03170 4.41974 4.46230 4.62780 4.82250 5.06382 5.26515 5.31772 5.33285 5.39216 5.47329 5.61198 5.64031 5.70372 5.77145 5.83727 5.90060 5.93480 5.95527 6.17284 6.54436 6.61917 6.77959 6.81583 6.87773 7.20882 7.39474 7.62419 7.92319 7.97700 8.22496 8.31040 8.99659 9.06680 9.56198 11.01317 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.020803 B = 0.005519 C = 0.005180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.629516 B = 5072.292132 C = 5404.053077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.374 6.374 3 C 0.067 3.933 4 C 0.182 3.818 5 C 0.483 3.517 6 O -0.497 6.497 7 O -0.507 6.507 8 C -0.114 4.114 9 C -0.133 4.133 10 C 0.104 3.896 11 N -0.614 5.614 12 C 0.540 3.460 13 O -0.535 6.535 14 C 0.038 3.962 15 H 0.060 0.940 16 C -0.130 4.130 17 C -0.505 4.505 18 H 0.073 0.927 19 C 0.062 3.938 20 N -0.893 5.893 21 Si 0.896 3.104 22 H -0.279 1.279 23 H -0.288 1.288 24 H -0.273 1.273 25 H 0.038 0.962 26 H 0.084 0.916 27 H 0.041 0.959 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.403 0.597 31 H 0.096 0.904 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.032 0.968 39 H 0.026 0.974 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.064 -13.022 -8.628 15.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.292 6.292 3 C -0.011 4.011 4 C 0.094 3.906 5 C 0.323 3.677 6 O -0.383 6.383 7 O -0.317 6.317 8 C -0.152 4.152 9 C -0.171 4.171 10 C -0.019 4.019 11 N -0.354 5.354 12 C 0.332 3.668 13 O -0.410 6.410 14 C 0.017 3.983 15 H 0.078 0.922 16 C -0.188 4.188 17 C -0.543 4.543 18 H 0.091 0.909 19 C -0.139 4.139 20 N -0.532 5.532 21 Si 0.724 3.276 22 H -0.205 1.205 23 H -0.213 1.213 24 H -0.198 1.198 25 H 0.056 0.944 26 H 0.102 0.898 27 H 0.059 0.941 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.261 0.739 31 H 0.114 0.886 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.052 0.948 39 H 0.045 0.955 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.619 -13.033 -8.261 15.515 hybrid contribution -0.080 0.487 1.392 1.477 sum -1.698 -12.547 -6.869 14.404 Atomic orbital electron populations 1.22684 0.81190 1.02386 0.99881 1.87903 1.19363 1.26541 1.95405 1.22623 0.90393 0.85632 1.02432 1.20613 0.93029 0.84968 0.92007 1.23506 0.79225 0.80113 0.84855 1.90707 1.54465 1.35665 1.57424 1.84586 1.32838 1.66543 1.47763 1.22650 1.02464 0.97835 0.92273 1.22890 1.01835 0.95083 0.97311 1.22432 0.94729 1.00566 0.84147 1.48982 1.48985 1.11976 1.25415 1.22051 0.79929 0.85561 0.79211 1.90561 1.38985 1.80096 1.31346 1.18843 0.92562 0.86352 1.00557 0.92209 1.21780 0.97435 1.01747 0.97877 1.21084 1.33464 0.95107 1.04691 0.90864 1.24917 0.95274 0.97323 0.96366 1.69954 1.41685 1.13749 1.27798 0.86528 0.78822 0.78659 0.83599 1.20514 1.21346 1.19825 0.94389 0.89757 0.94054 0.90880 0.91833 0.73948 0.88580 0.90048 0.90278 0.89282 0.89306 0.90737 0.90652 0.94844 0.95537 0.92896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 11.01 101.05 1.11 1.54 16 2 O -0.37 -5.91 8.42 -56.39 -0.47 -6.39 16 3 C 0.07 1.11 4.60 37.16 0.17 1.29 16 4 C 0.18 2.97 0.61 -131.99 -0.08 2.89 16 5 C 0.48 8.74 6.27 36.01 0.23 8.96 16 6 O -0.50 -10.04 15.83 -25.82 -0.41 -10.45 16 7 O -0.51 -8.15 13.15 -39.24 -0.52 -8.66 16 8 C -0.11 -1.36 5.90 -24.89 -0.15 -1.51 16 9 C -0.13 -1.35 7.09 -24.58 -0.17 -1.52 16 10 C 0.10 1.42 5.13 -2.56 -0.01 1.41 16 11 N -0.61 -10.91 2.59 -157.10 -0.41 -11.32 16 12 C 0.54 12.25 6.78 -10.98 -0.07 12.18 16 13 O -0.54 -13.94 13.85 5.56 0.08 -13.86 16 14 C 0.04 0.92 1.85 -92.92 -0.17 0.75 16 15 H 0.06 1.51 7.79 -51.94 -0.40 1.11 16 16 C -0.13 -2.88 8.81 37.16 0.33 -2.55 16 17 C -0.51 -14.18 8.28 -34.44 -0.29 -14.46 16 18 H 0.07 2.19 6.79 -52.49 -0.36 1.83 16 19 C 0.06 1.72 5.15 -17.82 -0.09 1.63 16 20 N -0.89 -24.77 12.18 55.43 0.67 -24.10 16 21 Si 0.90 21.69 29.55 -169.99 -5.02 16.66 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 25 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.08 0.86 8.14 -51.92 -0.42 0.43 16 27 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 1.46 6.71 -51.93 -0.35 1.11 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 30 H 0.40 4.69 9.10 45.56 0.41 5.11 16 31 H 0.10 1.06 7.33 -51.93 -0.38 0.68 16 32 H 0.08 0.90 7.85 -51.93 -0.41 0.49 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.09 1.23 7.31 -51.93 -0.38 0.85 16 36 H 0.07 0.97 7.18 -51.92 -0.37 0.60 16 37 H 0.07 1.82 6.80 -51.93 -0.35 1.47 16 38 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.03 0.48 5.19 -51.93 -0.27 0.21 16 40 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 325.73 15.07 4.91 4.91 Total: -1.00 -34.31 325.73 -5.32 -39.64 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -4.95 Total: 2.97 kcal Atomic # 6 Polarization: 9.81 SS G_CDS: 0.80 Total: 10.60 kcal Atomic # 7 Polarization: -35.68 SS G_CDS: 0.27 Total: -35.42 kcal Atomic # 8 Polarization: -38.04 SS G_CDS: -1.32 Total: -39.36 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -34.31 -5.32 -39.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606830995.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.721 kcal (2) G-P(sol) polarization free energy of solvation -34.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds