Wall clock time and date at job start Tue Mar 31 2020 05:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42906 * 113.99895 * 2 1 4 4 C 1.52998 * 109.47188 * 179.97438 * 3 2 1 5 5 C 1.50703 * 109.99895 * 301.09636 * 4 3 2 6 6 O 1.20828 * 119.99911 * 23.90143 * 5 4 3 7 7 O 1.34223 * 119.99842 * 203.90516 * 5 4 3 8 8 C 1.54323 * 109.88312 * 62.18811 * 4 3 2 9 9 C 1.55166 * 102.94020 * 97.22280 * 8 4 3 10 10 C 1.54910 * 101.57827 * 35.50173 * 9 8 4 11 11 N 1.47023 * 109.87983 * 179.97438 * 4 3 2 12 12 C 1.34775 * 125.64694 * 59.78890 * 11 4 3 13 13 O 1.21273 * 120.00152 * 359.71620 * 12 11 4 14 14 C 1.50705 * 119.99474 * 179.71310 * 12 11 4 15 15 H 1.08989 * 109.47132 * 59.99991 * 14 12 11 16 16 C 1.53001 * 109.47022 * 299.99806 * 14 12 11 17 17 C 1.50701 * 109.46854 * 180.02562 * 14 12 11 18 18 H 1.08000 * 120.00152 * 5.48091 * 17 14 12 19 19 C 1.37878 * 120.00105 * 185.47927 * 17 14 12 20 20 N 1.31514 * 119.99682 * 9.65744 * 19 17 14 21 21 Si 1.86801 * 119.99908 * 189.65486 * 19 17 14 22 22 H 1.48495 * 109.46994 * 85.00099 * 21 19 17 23 23 H 1.48503 * 109.46977 * 204.99465 * 21 19 17 24 24 H 1.48496 * 109.47358 * 324.99375 * 21 19 17 25 25 H 1.08997 * 109.47027 * 60.00231 * 1 2 3 26 26 H 1.09007 * 109.46936 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47483 * 300.00001 * 1 2 3 28 28 H 1.09000 * 109.46899 * 59.99694 * 3 2 1 29 29 H 1.08998 * 109.46454 * 300.00193 * 3 2 1 30 30 H 0.96703 * 117.00047 * 179.97438 * 7 5 4 31 31 H 1.09002 * 110.72080 * 338.86713 * 8 4 3 32 32 H 1.08994 * 110.87381 * 215.65924 * 8 4 3 33 33 H 1.08994 * 111.00634 * 277.42932 * 9 8 4 34 34 H 1.08998 * 111.03235 * 153.58820 * 9 8 4 35 35 H 1.09005 * 110.36595 * 204.14696 * 10 9 8 36 36 H 1.09007 * 110.36894 * 81.82884 * 10 9 8 37 37 H 1.09002 * 109.46781 * 185.91822 * 16 14 12 38 38 H 1.09001 * 109.47316 * 305.91754 * 16 14 12 39 39 H 1.08998 * 109.47339 * 65.92422 * 16 14 12 40 40 H 0.97000 * 119.99502 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 6 3.9910 0.4152 1.2136 6 8 3.2354 -0.3527 1.7608 7 8 5.2361 0.5829 1.6862 8 6 4.0057 0.4681 -1.2826 9 6 4.3973 1.6454 -2.2145 10 6 4.9837 2.6611 -1.2025 11 7 4.1430 2.5236 0.0000 12 6 3.9653 3.4672 0.9458 13 8 3.2480 3.2440 1.8979 14 6 4.6582 4.7996 0.8203 15 1 4.3424 5.2879 -0.1015 16 6 6.1730 4.5860 0.7911 17 6 4.2963 5.6669 1.9984 18 1 3.7036 5.2619 2.8053 19 6 4.7219 6.9775 2.0462 20 7 5.2768 7.5276 0.9883 21 14 4.5103 7.9716 3.6134 22 1 5.6574 7.7152 4.5209 23 1 4.4573 9.4176 3.2790 24 1 3.2480 7.5726 4.2861 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 1.6885 1.8464 0.8900 29 1 1.6885 1.8463 -0.8900 30 1 5.4825 0.0678 2.4666 31 1 3.1943 -0.1149 -1.7182 32 1 4.8685 -0.1661 -1.0793 33 1 3.5204 2.0552 -2.7157 34 1 5.1505 1.3368 -2.9393 35 1 4.9156 3.6742 -1.5992 36 1 6.0196 2.4120 -0.9719 37 1 6.6765 5.5526 0.8064 38 1 6.4749 4.0052 1.6628 39 1 6.4467 4.0480 -0.1165 40 1 5.5758 8.4497 1.0218 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606830995.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:40 Heat of formation + Delta-G solvation = -187.918631 kcal Electronic energy + Delta-G solvation = -24557.389319 eV Core-core repulsion = 20950.710111 eV Total energy + Delta-G solvation = -3606.679208 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.21516 -40.44193 -39.02881 -38.03736 -37.07586 -35.82104 -33.38927 -32.11814 -31.49234 -27.93711 -27.16924 -26.23218 -25.74983 -24.29059 -22.89816 -21.64083 -20.40192 -18.91813 -18.36886 -18.17048 -17.53492 -17.40283 -16.90509 -16.63008 -16.39711 -16.13196 -15.77626 -15.28872 -15.09437 -14.48456 -14.42022 -14.11920 -14.06265 -13.51624 -13.37623 -13.22311 -12.88427 -12.81674 -12.75370 -12.55140 -12.52765 -12.33110 -12.26636 -12.02078 -11.98639 -11.71232 -11.53260 -11.06297 -10.70854 -10.54289 -10.37208 -9.78277 -8.20520 -6.25108 1.04093 1.38898 1.40053 1.50211 1.68720 1.89948 2.09717 2.43421 2.79734 3.12198 3.34406 3.59210 3.73164 4.12455 4.15591 4.17888 4.30453 4.33860 4.47802 4.53173 4.61603 4.71488 4.75478 4.78482 4.84692 4.92024 4.95649 5.04138 5.11302 5.27427 5.35096 5.47580 5.52996 5.71695 5.83948 6.05978 6.15253 6.53933 6.82068 6.93066 7.32752 7.43079 8.88832 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.020803 B = 0.005519 C = 0.005180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.629516 B = 5072.292132 C = 5404.053077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.386 6.386 3 C 0.073 3.927 4 C 0.171 3.829 5 C 0.478 3.522 6 O -0.527 6.527 7 O -0.508 6.508 8 C -0.106 4.106 9 C -0.114 4.114 10 C 0.088 3.912 11 N -0.607 5.607 12 C 0.540 3.460 13 O -0.581 6.581 14 C 0.037 3.963 15 H 0.049 0.951 16 C -0.115 4.115 17 C -0.533 4.533 18 H 0.043 0.957 19 C 0.028 3.972 20 N -0.907 5.907 21 Si 0.948 3.052 22 H -0.272 1.272 23 H -0.274 1.274 24 H -0.283 1.283 25 H 0.061 0.939 26 H 0.106 0.894 27 H 0.027 0.973 28 H 0.028 0.972 29 H 0.084 0.916 30 H 0.420 0.580 31 H 0.110 0.890 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.129 0.871 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.052 0.948 38 H 0.024 0.976 39 H 0.066 0.934 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.236 -13.916 -10.788 17.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.304 6.304 3 C -0.005 4.005 4 C 0.084 3.916 5 C 0.320 3.680 6 O -0.415 6.415 7 O -0.321 6.321 8 C -0.143 4.143 9 C -0.152 4.152 10 C -0.033 4.033 11 N -0.344 5.344 12 C 0.332 3.668 13 O -0.460 6.460 14 C 0.016 3.984 15 H 0.067 0.933 16 C -0.173 4.173 17 C -0.571 4.571 18 H 0.062 0.938 19 C -0.173 4.173 20 N -0.545 5.545 21 Si 0.774 3.226 22 H -0.198 1.198 23 H -0.199 1.199 24 H -0.208 1.208 25 H 0.079 0.921 26 H 0.125 0.875 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.102 0.898 30 H 0.280 0.720 31 H 0.128 0.872 32 H 0.113 0.887 33 H 0.108 0.892 34 H 0.147 0.853 35 H 0.106 0.894 36 H 0.105 0.895 37 H 0.071 0.929 38 H 0.043 0.957 39 H 0.085 0.915 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.750 -13.946 -10.469 17.454 hybrid contribution -0.358 0.718 2.059 2.210 sum -1.109 -13.227 -8.410 15.713 Atomic orbital electron populations 1.22925 0.79507 1.04053 1.00356 1.87879 1.21250 1.25843 1.95424 1.22479 0.90912 0.85937 1.01188 1.20969 0.92871 0.84116 0.93669 1.23933 0.79298 0.79725 0.85083 1.90685 1.55236 1.37215 1.58389 1.84544 1.32024 1.66800 1.48686 1.22737 1.03379 0.98290 0.89923 1.22914 1.03159 0.92676 0.96449 1.22823 0.95017 1.02029 0.83419 1.48764 1.48678 1.11719 1.25226 1.21588 0.79483 0.86065 0.79672 1.90540 1.40851 1.81062 1.33567 1.18719 0.94140 0.87102 0.98464 0.93318 1.21596 0.95412 1.00842 0.99472 1.21209 1.34006 0.96391 1.05494 0.93829 1.25489 0.94976 0.97941 0.98845 1.69999 1.41661 1.14133 1.28716 0.85736 0.78364 0.77972 0.80577 1.19786 1.19867 1.20814 0.92070 0.87520 0.95420 0.95387 0.89780 0.71993 0.87162 0.88741 0.89242 0.85293 0.89433 0.89495 0.92885 0.95716 0.91496 0.92469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 11.01 113.37 1.25 1.89 16 2 O -0.39 -11.85 8.42 -128.75 -1.08 -12.94 16 3 C 0.07 2.40 4.60 71.98 0.33 2.74 16 4 C 0.17 5.38 0.61 3.21 0.00 5.38 16 5 C 0.48 17.14 6.27 71.24 0.45 17.58 16 6 O -0.53 -21.51 15.83 28.72 0.45 -21.05 16 7 O -0.51 -15.98 13.15 -51.35 -0.68 -16.65 16 8 C -0.11 -2.13 5.90 31.79 0.19 -1.94 16 9 C -0.11 -1.78 7.09 31.99 0.23 -1.56 16 10 C 0.09 2.14 5.13 86.87 0.45 2.59 16 11 N -0.61 -21.00 2.59 -769.33 -1.99 -23.00 16 12 C 0.54 25.00 6.78 87.66 0.59 25.59 16 13 O -0.58 -31.72 13.85 -3.01 -0.04 -31.76 16 14 C 0.04 1.82 1.85 -12.28 -0.02 1.80 16 15 H 0.05 2.50 7.79 -2.39 -0.02 2.48 16 16 C -0.12 -5.05 8.81 71.98 0.63 -4.41 16 17 C -0.53 -30.85 8.28 25.60 0.21 -30.64 16 18 H 0.04 2.74 6.79 -2.91 -0.02 2.72 16 19 C 0.03 1.54 5.15 84.65 0.44 1.97 16 20 N -0.91 -50.31 12.18 21.45 0.26 -50.05 16 21 Si 0.95 44.91 29.55 68.60 2.03 46.94 16 22 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 23 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 24 H -0.28 -13.73 7.11 99.48 0.71 -13.02 16 25 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 26 H 0.11 1.98 8.14 -2.38 -0.02 1.96 16 27 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.03 1.17 6.71 -2.39 -0.02 1.15 16 29 H 0.08 2.34 8.14 -2.39 -0.02 2.33 16 30 H 0.42 9.57 9.10 -74.06 -0.67 8.90 16 31 H 0.11 1.99 7.33 -2.39 -0.02 1.97 16 32 H 0.09 1.70 7.85 -2.39 -0.02 1.68 16 33 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.09 2.20 7.31 -2.38 -0.02 2.18 16 36 H 0.09 1.94 7.18 -2.38 -0.02 1.92 16 37 H 0.05 2.55 6.80 -2.39 -0.02 2.53 16 38 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.07 2.32 5.19 -2.39 -0.01 2.30 16 40 H 0.27 13.97 8.31 -92.71 -0.77 13.20 16 Total: -1.00 -77.49 325.73 4.08 -73.41 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: 0.39 Total: 14.11 kcal Atomic # 6 Polarization: 16.26 SS G_CDS: 4.74 Total: 21.00 kcal Atomic # 7 Polarization: -71.32 SS G_CDS: -1.73 Total: -73.05 kcal Atomic # 8 Polarization: -81.06 SS G_CDS: -1.35 Total: -82.41 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -77.49 4.08 -73.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606830995.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.509 kcal (2) G-P(sol) polarization free energy of solvation -77.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds