Wall clock time and date at job start Tue Mar 31 2020 05:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42900 * 113.99881 * 2 1 4 4 C 1.52994 * 109.47256 * 180.02562 * 3 2 1 5 5 C 1.50702 * 109.99549 * 58.90801 * 4 3 2 6 6 O 1.20832 * 120.00164 * 266.09497 * 5 4 3 7 7 O 1.34223 * 120.00419 * 86.09782 * 5 4 3 8 8 C 1.54335 * 109.99133 * 297.87076 * 4 3 2 9 9 C 1.55157 * 103.01785 * 218.66282 * 8 4 3 10 10 C 1.54902 * 101.58383 * 35.30514 * 9 8 4 11 11 N 1.47019 * 109.88303 * 180.02562 * 4 3 2 12 12 C 1.34779 * 125.65090 * 298.39443 * 11 4 3 13 13 O 1.21278 * 119.99461 * 5.00924 * 12 11 4 14 14 C 1.50700 * 120.00174 * 185.00283 * 12 11 4 15 15 H 1.08996 * 109.46888 * 334.98299 * 14 12 11 16 16 C 1.53005 * 109.46681 * 94.97827 * 14 12 11 17 17 C 1.50697 * 109.46993 * 214.97670 * 14 12 11 18 18 H 1.07996 * 120.00086 * 0.02562 * 17 14 12 19 19 C 1.37884 * 119.99607 * 180.02562 * 17 14 12 20 20 N 1.31513 * 119.99668 * 179.97438 * 19 17 14 21 21 Si 1.86797 * 119.99866 * 359.97438 * 19 17 14 22 22 H 1.48499 * 109.46884 * 90.00440 * 21 19 17 23 23 H 1.48500 * 109.47386 * 330.00014 * 21 19 17 24 24 H 1.48511 * 109.46772 * 209.99932 * 21 19 17 25 25 H 1.08998 * 109.46991 * 60.00071 * 1 2 3 26 26 H 1.09000 * 109.46426 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46475 * 299.99439 * 1 2 3 28 28 H 1.09005 * 109.46791 * 60.00302 * 3 2 1 29 29 H 1.09001 * 109.47423 * 300.00557 * 3 2 1 30 30 H 0.96703 * 117.00634 * 180.02562 * 7 5 4 31 31 H 1.09003 * 110.85043 * 100.19980 * 8 4 3 32 32 H 1.08998 * 110.66940 * 337.04525 * 8 4 3 33 33 H 1.09001 * 111.00574 * 277.23199 * 9 8 4 34 34 H 1.08999 * 111.03658 * 153.40154 * 9 8 4 35 35 H 1.09000 * 110.37203 * 204.14766 * 10 9 8 36 36 H 1.09006 * 110.46067 * 81.87437 * 10 9 8 37 37 H 1.08994 * 109.47270 * 55.02493 * 16 14 12 38 38 H 1.09003 * 109.46736 * 175.02977 * 16 14 12 39 39 H 1.09001 * 109.46935 * 295.02420 * 16 14 12 40 40 H 0.97004 * 119.99967 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 6 3.9910 0.4152 -1.2137 6 8 4.1710 -0.7773 -1.1402 7 8 4.1967 1.0545 -2.3758 8 6 4.0085 0.4670 1.2811 9 6 5.3022 1.2372 1.6559 10 6 4.9385 2.6816 1.2305 11 7 4.1430 2.5235 0.0000 12 6 3.9930 3.4547 -0.9628 13 8 3.2365 3.2528 -1.8889 14 6 4.7653 4.7466 -0.8885 15 1 5.0222 4.9571 0.1497 16 6 6.0463 4.6233 -1.7160 17 6 3.9206 5.8689 -1.4345 18 1 2.9241 5.6668 -1.7985 19 6 4.4201 7.1536 -1.4693 20 7 3.6832 8.1328 -1.9462 21 14 6.1435 7.5030 -0.8390 22 1 7.1160 7.3604 -1.9521 23 1 6.4809 6.5397 0.2397 24 1 6.2035 8.8868 -0.3034 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3632 0.5138 0.8901 28 1 1.6886 1.8463 0.8901 29 1 1.6886 1.8465 -0.8899 30 1 4.4881 0.5186 -3.1262 31 1 4.2285 -0.5815 1.0800 32 1 3.2628 0.5585 2.0708 33 1 6.1559 0.8662 1.0888 34 1 5.4940 1.1819 2.7274 35 1 5.8422 3.2562 1.0271 36 1 4.3461 3.1691 2.0048 37 1 5.7942 4.3260 -2.7338 38 1 6.5606 5.5842 -1.7348 39 1 6.6969 3.8718 -1.2686 40 1 4.0344 9.0367 -1.9704 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606830996.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:44 Heat of formation + Delta-G solvation = -154.203513 kcal Electronic energy + Delta-G solvation = -24628.825609 eV Core-core repulsion = 21023.608398 eV Total energy + Delta-G solvation = -3605.217211 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.95192 -38.95064 -37.80800 -36.83841 -35.74309 -33.88599 -31.72991 -31.13076 -30.58132 -26.92453 -25.23347 -25.06481 -24.21837 -23.10563 -21.98659 -19.98818 -18.79778 -17.68627 -17.14508 -16.80504 -16.30580 -16.09416 -15.63857 -15.37757 -14.85685 -14.66344 -14.41815 -13.90631 -13.56007 -13.49118 -13.00984 -12.95135 -12.49915 -12.40760 -12.29282 -12.20252 -11.62542 -11.58233 -11.29816 -11.23102 -11.06890 -10.97158 -10.86009 -10.64095 -10.38829 -10.28927 -9.71068 -9.64820 -9.19760 -8.72704 -8.61236 -8.41034 -6.11586 -4.12154 2.34961 3.01848 3.17722 3.21053 3.27488 3.33238 3.57693 3.95671 4.32636 4.32944 4.50826 4.85056 5.05493 5.18266 5.21740 5.27745 5.34279 5.37011 5.51451 5.55750 5.60216 5.74515 5.75244 5.76972 5.81121 5.95655 6.09808 6.15201 6.30993 6.44213 6.50426 6.71282 6.76893 7.04502 7.12889 7.50065 7.95860 8.17146 8.45662 8.98330 9.00976 9.46682 11.01204 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.021824 B = 0.005810 C = 0.005445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.662902 B = 4818.315830 C = 5140.704011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.387 6.387 3 C 0.057 3.943 4 C 0.182 3.818 5 C 0.488 3.512 6 O -0.517 6.517 7 O -0.483 6.483 8 C -0.112 4.112 9 C -0.137 4.137 10 C 0.100 3.900 11 N -0.622 5.622 12 C 0.550 3.450 13 O -0.503 6.503 14 C 0.005 3.995 15 H 0.044 0.956 16 C -0.140 4.140 17 C -0.504 4.504 18 H 0.086 0.914 19 C 0.072 3.928 20 N -0.894 5.894 21 Si 0.886 3.114 22 H -0.277 1.277 23 H -0.266 1.266 24 H -0.295 1.295 25 H 0.043 0.957 26 H 0.086 0.914 27 H 0.042 0.958 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.399 0.601 31 H 0.101 0.899 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.073 0.927 37 H 0.060 0.940 38 H 0.050 0.950 39 H 0.031 0.969 40 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.449 -14.465 8.270 16.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.305 6.305 3 C -0.021 4.021 4 C 0.094 3.906 5 C 0.328 3.672 6 O -0.405 6.405 7 O -0.291 6.291 8 C -0.150 4.150 9 C -0.175 4.175 10 C -0.023 4.023 11 N -0.362 5.362 12 C 0.341 3.659 13 O -0.374 6.374 14 C -0.016 4.016 15 H 0.061 0.939 16 C -0.197 4.197 17 C -0.542 4.542 18 H 0.104 0.896 19 C -0.130 4.130 20 N -0.532 5.532 21 Si 0.716 3.284 22 H -0.204 1.204 23 H -0.191 1.191 24 H -0.223 1.223 25 H 0.062 0.938 26 H 0.104 0.896 27 H 0.061 0.939 28 H 0.086 0.914 29 H 0.098 0.902 30 H 0.256 0.744 31 H 0.119 0.881 32 H 0.108 0.892 33 H 0.094 0.906 34 H 0.108 0.892 35 H 0.103 0.897 36 H 0.091 0.909 37 H 0.079 0.921 38 H 0.069 0.931 39 H 0.050 0.950 40 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.017 -14.524 7.953 16.590 hybrid contribution 0.875 0.239 -0.229 0.935 sum 1.891 -14.285 7.723 16.349 Atomic orbital electron populations 1.22742 0.80627 1.02618 1.00317 1.87873 1.19997 1.27068 1.95606 1.22876 0.90591 0.85358 1.03300 1.20524 0.93286 0.84915 0.91838 1.23500 0.72716 0.86210 0.84726 1.90647 1.48400 1.16320 1.85181 1.84882 1.78894 1.44951 1.20358 1.22686 0.97673 1.00818 0.93821 1.22883 0.97666 0.94690 1.02289 1.22357 0.96154 0.97130 0.86661 1.49005 1.51335 1.12796 1.23113 1.21196 0.81711 0.83711 0.79316 1.90594 1.36376 1.77575 1.32853 1.19292 0.93819 0.90573 0.97942 0.93865 1.22032 0.96811 0.99675 1.01204 1.20792 1.02354 0.89569 1.41530 0.89646 1.24956 0.97361 0.95991 0.94703 1.69876 1.37077 1.00622 1.45581 0.86890 0.85234 0.76899 0.79417 1.20420 1.19136 1.22264 0.93832 0.89566 0.93931 0.91411 0.90232 0.74442 0.88088 0.89198 0.90615 0.89216 0.89657 0.90894 0.92054 0.93139 0.95002 0.92461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 101.05 1.11 1.49 16 2 O -0.39 -5.76 10.03 -35.23 -0.35 -6.11 16 3 C 0.06 0.89 4.72 37.15 0.18 1.06 16 4 C 0.18 2.87 0.62 -131.99 -0.08 2.79 16 5 C 0.49 8.36 6.82 36.01 0.25 8.61 16 6 O -0.52 -9.31 16.37 -18.76 -0.31 -9.61 16 7 O -0.48 -8.27 10.29 -46.75 -0.48 -8.75 16 8 C -0.11 -1.37 5.70 -24.89 -0.14 -1.51 16 9 C -0.14 -1.44 7.09 -24.59 -0.17 -1.61 16 10 C 0.10 1.31 6.34 -2.56 -0.02 1.29 16 11 N -0.62 -10.61 2.81 -157.10 -0.44 -11.05 16 12 C 0.55 11.80 5.89 -10.98 -0.06 11.74 16 13 O -0.50 -12.24 12.82 -17.09 -0.22 -12.46 16 14 C 0.01 0.12 1.76 -92.92 -0.16 -0.04 16 15 H 0.04 0.93 5.79 -51.93 -0.30 0.63 16 16 C -0.14 -2.96 8.67 37.16 0.32 -2.63 16 17 C -0.50 -14.14 8.90 -34.44 -0.31 -14.45 16 18 H 0.09 2.71 7.50 -52.49 -0.39 2.32 16 19 C 0.07 2.03 5.45 -17.82 -0.10 1.93 16 20 N -0.89 -26.99 13.96 55.43 0.77 -26.22 16 21 Si 0.89 20.88 24.41 -169.99 -4.15 16.73 16 22 H -0.28 -6.40 6.83 56.52 0.39 -6.01 16 23 H -0.27 -5.76 6.53 56.52 0.37 -5.40 16 24 H -0.30 -6.99 7.11 56.52 0.40 -6.59 16 25 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.96 8.13 -51.93 -0.42 0.53 16 29 H 0.08 1.47 6.69 -51.93 -0.35 1.12 16 30 H 0.40 4.89 9.10 45.56 0.41 5.30 16 31 H 0.10 1.31 6.80 -51.93 -0.35 0.95 16 32 H 0.09 0.95 7.84 -51.93 -0.41 0.54 16 33 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.09 1.11 7.23 -51.93 -0.38 0.74 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.06 1.34 8.14 -51.93 -0.42 0.91 16 38 H 0.05 1.10 3.21 -51.93 -0.17 0.94 16 39 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 319.85 15.07 4.82 4.82 Total: -1.00 -34.74 319.85 -4.46 -39.20 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -4.92 Total: 4.79 kcal Atomic # 6 Polarization: 7.86 SS G_CDS: 0.81 Total: 8.67 kcal Atomic # 7 Polarization: -37.60 SS G_CDS: 0.33 Total: -37.27 kcal Atomic # 8 Polarization: -35.57 SS G_CDS: -1.36 Total: -36.93 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.15 Total: 16.73 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -34.74 -4.46 -39.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606830996.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.004 kcal (2) G-P(sol) polarization free energy of solvation -34.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds