Wall clock time and date at job start Tue Mar 31 2020 05:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42900 * 113.99881 * 2 1 4 4 C 1.52994 * 109.47256 * 180.02562 * 3 2 1 5 5 C 1.50702 * 109.99549 * 58.90801 * 4 3 2 6 6 O 1.20832 * 120.00164 * 266.09497 * 5 4 3 7 7 O 1.34223 * 120.00419 * 86.09782 * 5 4 3 8 8 C 1.54335 * 109.99133 * 297.87076 * 4 3 2 9 9 C 1.55157 * 103.01785 * 218.66282 * 8 4 3 10 10 C 1.54902 * 101.58383 * 35.30514 * 9 8 4 11 11 N 1.47019 * 109.88303 * 180.02562 * 4 3 2 12 12 C 1.34779 * 125.65090 * 298.39443 * 11 4 3 13 13 O 1.21278 * 119.99461 * 5.00924 * 12 11 4 14 14 C 1.50700 * 120.00174 * 185.00283 * 12 11 4 15 15 H 1.08996 * 109.46888 * 334.98299 * 14 12 11 16 16 C 1.53005 * 109.46681 * 94.97827 * 14 12 11 17 17 C 1.50697 * 109.46993 * 214.97670 * 14 12 11 18 18 H 1.07996 * 120.00086 * 0.02562 * 17 14 12 19 19 C 1.37884 * 119.99607 * 180.02562 * 17 14 12 20 20 N 1.31513 * 119.99668 * 179.97438 * 19 17 14 21 21 Si 1.86797 * 119.99866 * 359.97438 * 19 17 14 22 22 H 1.48499 * 109.46884 * 90.00440 * 21 19 17 23 23 H 1.48500 * 109.47386 * 330.00014 * 21 19 17 24 24 H 1.48511 * 109.46772 * 209.99932 * 21 19 17 25 25 H 1.08998 * 109.46991 * 60.00071 * 1 2 3 26 26 H 1.09000 * 109.46426 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46475 * 299.99439 * 1 2 3 28 28 H 1.09005 * 109.46791 * 60.00302 * 3 2 1 29 29 H 1.09001 * 109.47423 * 300.00557 * 3 2 1 30 30 H 0.96703 * 117.00634 * 180.02562 * 7 5 4 31 31 H 1.09003 * 110.85043 * 100.19980 * 8 4 3 32 32 H 1.08998 * 110.66940 * 337.04525 * 8 4 3 33 33 H 1.09001 * 111.00574 * 277.23199 * 9 8 4 34 34 H 1.08999 * 111.03658 * 153.40154 * 9 8 4 35 35 H 1.09000 * 110.37203 * 204.14766 * 10 9 8 36 36 H 1.09006 * 110.46067 * 81.87437 * 10 9 8 37 37 H 1.08994 * 109.47270 * 55.02493 * 16 14 12 38 38 H 1.09003 * 109.46736 * 175.02977 * 16 14 12 39 39 H 1.09001 * 109.46935 * 295.02420 * 16 14 12 40 40 H 0.97004 * 119.99967 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 6 3.9910 0.4152 -1.2137 6 8 4.1710 -0.7773 -1.1402 7 8 4.1967 1.0545 -2.3758 8 6 4.0085 0.4670 1.2811 9 6 5.3022 1.2372 1.6559 10 6 4.9385 2.6816 1.2305 11 7 4.1430 2.5235 0.0000 12 6 3.9930 3.4547 -0.9628 13 8 3.2365 3.2528 -1.8889 14 6 4.7653 4.7466 -0.8885 15 1 5.0222 4.9571 0.1497 16 6 6.0463 4.6233 -1.7160 17 6 3.9206 5.8689 -1.4345 18 1 2.9241 5.6668 -1.7985 19 6 4.4201 7.1536 -1.4693 20 7 3.6832 8.1328 -1.9462 21 14 6.1435 7.5030 -0.8390 22 1 7.1160 7.3604 -1.9521 23 1 6.4809 6.5397 0.2397 24 1 6.2035 8.8868 -0.3034 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3632 0.5138 0.8901 28 1 1.6886 1.8463 0.8901 29 1 1.6886 1.8465 -0.8899 30 1 4.4881 0.5186 -3.1262 31 1 4.2285 -0.5815 1.0800 32 1 3.2628 0.5585 2.0708 33 1 6.1559 0.8662 1.0888 34 1 5.4940 1.1819 2.7274 35 1 5.8422 3.2562 1.0271 36 1 4.3461 3.1691 2.0048 37 1 5.7942 4.3260 -2.7338 38 1 6.5606 5.5842 -1.7348 39 1 6.6969 3.8718 -1.2686 40 1 4.0344 9.0367 -1.9704 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606830996.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:44 Heat of formation + Delta-G solvation = -180.866331 kcal Electronic energy + Delta-G solvation = -24629.981796 eV Core-core repulsion = 21023.608398 eV Total energy + Delta-G solvation = -3606.373397 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = -0.09 seconds Orbital eigenvalues (eV) -42.24040 -40.40105 -39.07203 -38.09133 -37.10255 -35.79701 -33.54716 -32.28509 -31.99209 -27.91934 -27.18209 -26.24025 -25.56451 -24.60766 -23.16671 -21.29998 -20.19630 -19.01917 -18.83348 -18.25597 -17.95681 -17.24463 -16.99269 -16.82399 -16.28597 -15.90695 -15.73487 -15.37011 -15.04501 -14.66953 -14.64949 -14.11574 -14.04691 -13.87399 -13.65756 -13.39080 -13.23065 -12.82016 -12.57536 -12.54953 -12.48098 -12.28434 -12.08717 -12.06206 -11.82412 -11.64247 -11.47507 -11.23702 -10.84198 -10.75695 -10.36487 -9.76258 -8.27514 -6.35215 1.02350 1.36231 1.40565 1.52801 1.70017 1.85166 2.16142 2.35034 2.77591 3.06636 3.25328 3.50986 3.81229 4.03174 4.10664 4.15175 4.25989 4.34708 4.42889 4.45500 4.48976 4.55073 4.62690 4.72914 4.75397 4.80007 4.82587 4.89232 4.97870 5.08744 5.26293 5.29034 5.41701 5.50687 5.54696 5.95216 6.22369 6.52804 6.75958 6.93792 7.25233 7.43301 8.89817 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.021824 B = 0.005810 C = 0.005445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.662902 B = 4818.315830 C = 5140.704011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.399 6.399 3 C 0.063 3.937 4 C 0.174 3.826 5 C 0.485 3.515 6 O -0.530 6.530 7 O -0.499 6.499 8 C -0.106 4.106 9 C -0.121 4.121 10 C 0.084 3.916 11 N -0.617 5.617 12 C 0.548 3.452 13 O -0.547 6.547 14 C 0.004 3.996 15 H 0.069 0.931 16 C -0.135 4.135 17 C -0.515 4.515 18 H 0.024 0.976 19 C 0.010 3.990 20 N -0.950 5.950 21 Si 0.955 3.045 22 H -0.267 1.267 23 H -0.223 1.223 24 H -0.297 1.297 25 H 0.034 0.966 26 H 0.109 0.891 27 H 0.060 0.940 28 H 0.084 0.916 29 H 0.041 0.959 30 H 0.414 0.586 31 H 0.096 0.904 32 H 0.111 0.889 33 H 0.075 0.925 34 H 0.130 0.870 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.042 0.958 38 H 0.048 0.952 39 H 0.073 0.927 40 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.953 -15.911 11.303 19.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.318 6.318 3 C -0.016 4.016 4 C 0.086 3.914 5 C 0.326 3.674 6 O -0.419 6.419 7 O -0.310 6.310 8 C -0.143 4.143 9 C -0.159 4.159 10 C -0.037 4.037 11 N -0.356 5.356 12 C 0.339 3.661 13 O -0.422 6.422 14 C -0.018 4.018 15 H 0.087 0.913 16 C -0.193 4.193 17 C -0.553 4.553 18 H 0.042 0.958 19 C -0.187 4.187 20 N -0.590 5.590 21 Si 0.780 3.220 22 H -0.193 1.193 23 H -0.146 1.146 24 H -0.225 1.225 25 H 0.053 0.947 26 H 0.127 0.873 27 H 0.079 0.921 28 H 0.102 0.898 29 H 0.059 0.941 30 H 0.274 0.726 31 H 0.114 0.886 32 H 0.129 0.871 33 H 0.093 0.907 34 H 0.148 0.852 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.061 0.939 38 H 0.066 0.934 39 H 0.092 0.908 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.535 -16.028 11.024 19.772 hybrid contribution -0.073 0.619 -1.239 1.387 sum 3.462 -15.409 9.785 18.579 Atomic orbital electron populations 1.22985 0.78908 1.04298 1.00809 1.87853 1.21911 1.26379 1.95635 1.22722 0.90986 0.85679 1.02163 1.20874 0.93192 0.84305 0.93039 1.23826 0.72309 0.86201 0.85035 1.90630 1.49064 1.16738 1.85466 1.84879 1.78924 1.45925 1.21270 1.22741 0.99240 1.00122 0.92218 1.22893 0.96361 0.91931 1.04677 1.22794 0.96222 0.99466 0.85179 1.48817 1.51129 1.12448 1.23215 1.20869 0.81249 0.84176 0.79807 1.90580 1.38097 1.78528 1.35025 1.19230 0.93941 0.89672 0.98967 0.91341 1.21941 0.96319 1.00784 1.00245 1.20927 1.00851 0.91969 1.41555 0.95777 1.25974 1.02669 0.95307 0.94732 1.70065 1.39905 1.01318 1.47680 0.85768 0.78650 0.77415 0.80201 1.19334 1.14614 1.22504 0.94716 0.87308 0.92093 0.89812 0.94107 0.72647 0.88597 0.87080 0.90660 0.85215 0.88879 0.89052 0.93895 0.93385 0.90768 0.92340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 11.01 113.37 1.25 1.81 16 2 O -0.40 -11.54 10.03 -148.98 -1.49 -13.03 16 3 C 0.06 1.95 4.72 71.98 0.34 2.29 16 4 C 0.17 5.21 0.62 3.21 0.00 5.21 16 5 C 0.48 16.34 6.82 71.24 0.49 16.83 16 6 O -0.53 -18.57 16.37 21.95 0.36 -18.22 16 7 O -0.50 -17.35 10.29 -44.16 -0.45 -17.80 16 8 C -0.11 -2.21 5.70 31.79 0.18 -2.03 16 9 C -0.12 -1.94 7.09 31.98 0.23 -1.71 16 10 C 0.08 1.86 6.34 86.86 0.55 2.41 16 11 N -0.62 -19.98 2.81 -769.35 -2.16 -22.14 16 12 C 0.55 23.57 5.89 87.66 0.52 24.09 16 13 O -0.55 -27.92 12.82 18.63 0.24 -27.68 16 14 C 0.00 0.16 1.76 -12.28 -0.02 0.14 16 15 H 0.07 2.72 5.79 -2.39 -0.01 2.71 16 16 C -0.14 -5.42 8.67 71.98 0.62 -4.79 16 17 C -0.51 -29.86 8.90 25.60 0.23 -29.63 16 18 H 0.02 1.64 7.50 -2.91 -0.02 1.62 16 19 C 0.01 0.58 5.45 84.66 0.46 1.04 16 20 N -0.95 -59.65 13.96 21.45 0.30 -59.35 16 21 Si 0.95 41.83 24.41 68.60 1.67 43.51 16 22 H -0.27 -11.24 6.83 99.48 0.68 -10.56 16 23 H -0.22 -8.22 6.53 99.48 0.65 -7.57 16 24 H -0.30 -13.07 7.11 99.48 0.71 -12.37 16 25 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 26 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.08 2.27 8.13 -2.38 -0.02 2.25 16 29 H 0.04 1.58 6.69 -2.39 -0.02 1.57 16 30 H 0.41 10.38 9.10 -74.05 -0.67 9.71 16 31 H 0.10 2.19 6.80 -2.39 -0.02 2.17 16 32 H 0.11 1.86 7.84 -2.39 -0.02 1.84 16 33 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.13 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.09 1.94 7.23 -2.39 -0.02 1.92 16 36 H 0.09 1.72 8.14 -2.38 -0.02 1.71 16 37 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.05 1.94 3.21 -2.39 -0.01 1.93 16 39 H 0.07 2.32 8.14 -2.39 -0.02 2.31 16 40 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 Total: -1.00 -80.80 319.85 3.61 -77.19 By element: Atomic # 1 Polarization: 21.57 SS G_CDS: 0.30 Total: 21.88 kcal Atomic # 6 Polarization: 10.80 SS G_CDS: 4.84 Total: 15.64 kcal Atomic # 7 Polarization: -79.63 SS G_CDS: -1.86 Total: -81.49 kcal Atomic # 8 Polarization: -75.38 SS G_CDS: -1.35 Total: -76.73 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 1.67 Total: 43.51 kcal Total: -80.80 3.61 -77.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606830996.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.675 kcal (2) G-P(sol) polarization free energy of solvation -80.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.09 seconds