Wall clock time and date at job start Tue Mar 31 2020 05:59:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42899 * 114.00275 * 2 1 4 4 C 1.52992 * 109.47466 * 180.02562 * 3 2 1 5 5 C 1.50701 * 109.87252 * 300.70179 * 4 3 2 6 6 O 1.20827 * 120.00036 * 24.29439 * 5 4 3 7 7 O 1.34230 * 119.99932 * 204.30237 * 5 4 3 8 8 C 1.54322 * 109.88316 * 61.71234 * 4 3 2 9 9 C 1.55401 * 102.82924 * 97.47517 * 8 4 3 10 10 C 1.54912 * 101.66599 * 35.33654 * 9 8 4 11 11 N 1.47021 * 109.88534 * 179.68230 * 4 3 2 12 12 C 1.34775 * 125.64774 * 59.33116 * 11 4 3 13 13 O 1.21282 * 119.99886 * 354.68947 * 12 11 4 14 14 C 1.50700 * 120.00035 * 174.68560 * 12 11 4 15 15 H 1.08995 * 109.47141 * 315.92126 * 14 12 11 16 16 C 1.53004 * 109.46910 * 75.92600 * 14 12 11 17 17 C 1.50706 * 109.47084 * 195.92150 * 14 12 11 18 18 H 1.07999 * 119.99858 * 0.02562 * 17 14 12 19 19 C 1.37871 * 119.99750 * 180.02562 * 17 14 12 20 20 N 1.31514 * 120.00262 * 359.97438 * 19 17 14 21 21 Si 1.86805 * 119.99823 * 180.02562 * 19 17 14 22 22 H 1.48502 * 109.47200 * 60.00011 * 21 19 17 23 23 H 1.48494 * 109.47229 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47102 * 300.00081 * 21 19 17 25 25 H 1.08994 * 109.47133 * 60.00042 * 1 2 3 26 26 H 1.09001 * 109.46875 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46854 * 300.00164 * 1 2 3 28 28 H 1.08995 * 109.47074 * 59.99655 * 3 2 1 29 29 H 1.09000 * 109.46541 * 300.00044 * 3 2 1 30 30 H 0.96707 * 117.00312 * 179.97438 * 7 5 4 31 31 H 1.09005 * 110.72171 * 215.74119 * 8 4 3 32 32 H 1.08997 * 110.72223 * 339.01701 * 8 4 3 33 33 H 1.09004 * 110.88989 * 277.27202 * 9 8 4 34 34 H 1.08997 * 111.07905 * 153.48489 * 9 8 4 35 35 H 1.09002 * 110.36861 * 204.24319 * 10 9 8 36 36 H 1.09004 * 110.36380 * 81.91544 * 10 9 8 37 37 H 1.08999 * 109.46984 * 66.62582 * 16 14 12 38 38 H 1.09000 * 109.46958 * 186.62970 * 16 14 12 39 39 H 1.09002 * 109.46748 * 306.62230 * 16 14 12 40 40 H 0.97003 * 119.99888 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 3.9895 0.4226 1.2176 6 8 3.2351 -0.3461 1.7653 7 8 5.2319 0.5980 1.6945 8 6 4.0038 0.4579 -1.2789 9 6 4.4000 1.6313 -2.2175 10 6 4.9854 2.6534 -1.2112 11 7 4.1431 2.5234 -0.0083 12 6 3.9598 3.4745 0.9288 13 8 3.1673 3.2942 1.8289 14 6 4.7398 4.7621 0.8582 15 1 5.7820 4.5432 0.6258 16 6 4.1503 5.6560 -0.2347 17 6 4.6592 5.4716 2.1853 18 1 4.0996 5.0338 2.9986 19 6 5.2999 6.6797 2.3610 20 7 5.9818 7.2126 1.3708 21 14 5.2007 7.5589 4.0062 22 1 5.7737 6.6913 5.0665 23 1 5.9691 8.8276 3.9366 24 1 3.7809 7.8563 4.3237 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.6886 1.8463 0.8899 29 1 1.6886 1.8463 -0.8900 30 1 5.4775 0.0876 2.4783 31 1 4.8660 -0.1751 -1.0687 32 1 3.1910 -0.1265 -1.7101 33 1 3.5238 2.0381 -2.7223 34 1 5.1542 1.3183 -2.9396 35 1 4.9177 3.6639 -1.6142 36 1 6.0209 2.4055 -0.9779 37 1 3.1479 5.9710 0.0550 38 1 4.7831 6.5337 -0.3667 39 1 4.1003 5.1002 -1.1710 40 1 6.4329 8.0624 1.4946 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606830997.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:47 Heat of formation + Delta-G solvation = -162.601057 kcal Electronic energy + Delta-G solvation = -24531.082630 eV Core-core repulsion = 20925.501275 eV Total energy + Delta-G solvation = -3605.581356 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.84347 -38.91819 -37.67991 -36.69313 -35.70483 -33.84528 -31.65261 -30.90777 -29.88255 -26.86073 -25.27455 -24.97418 -24.28599 -22.70764 -21.74335 -20.17274 -18.95698 -17.45007 -16.92342 -16.37584 -16.23772 -15.84599 -15.44885 -15.33369 -15.01115 -14.57346 -14.23124 -13.85806 -13.56981 -13.27674 -12.95945 -12.80275 -12.45379 -12.23738 -12.14456 -11.63012 -11.53393 -11.30865 -11.17409 -11.08324 -10.99929 -10.78219 -10.73985 -10.51363 -10.31953 -10.24951 -10.01547 -9.49073 -9.02788 -8.68196 -8.39417 -8.31081 -6.06381 -4.09089 2.41757 3.13837 3.29707 3.34779 3.37199 3.43958 3.56389 4.02630 4.41845 4.45708 4.64002 4.82754 5.06256 5.27542 5.32207 5.33410 5.39451 5.47298 5.60977 5.63898 5.69989 5.78442 5.83516 5.89584 5.91595 5.97319 6.18514 6.60706 6.64498 6.79047 6.80342 6.91395 7.21378 7.42729 7.70661 7.92145 8.02070 8.22980 8.30596 8.96784 9.06285 9.55822 11.01626 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.020994 B = 0.005497 C = 0.005200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.404086 B = 5092.312066 C = 5383.662336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.375 6.375 3 C 0.067 3.933 4 C 0.181 3.819 5 C 0.482 3.518 6 O -0.497 6.497 7 O -0.506 6.506 8 C -0.114 4.114 9 C -0.131 4.131 10 C 0.098 3.902 11 N -0.614 5.614 12 C 0.541 3.459 13 O -0.537 6.537 14 C 0.040 3.960 15 H 0.052 0.948 16 C -0.131 4.131 17 C -0.503 4.503 18 H 0.071 0.929 19 C 0.061 3.939 20 N -0.895 5.895 21 Si 0.901 3.099 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.276 1.276 25 H 0.037 0.963 26 H 0.084 0.916 27 H 0.041 0.959 28 H 0.075 0.925 29 H 0.062 0.938 30 H 0.404 0.596 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.072 0.928 37 H 0.035 0.965 38 H 0.091 0.909 39 H 0.016 0.984 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.911 -11.956 -9.554 15.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.293 6.293 3 C -0.011 4.011 4 C 0.093 3.907 5 C 0.321 3.679 6 O -0.382 6.382 7 O -0.317 6.317 8 C -0.152 4.152 9 C -0.169 4.169 10 C -0.024 4.024 11 N -0.354 5.354 12 C 0.334 3.666 13 O -0.412 6.412 14 C 0.019 3.981 15 H 0.070 0.930 16 C -0.189 4.189 17 C -0.541 4.541 18 H 0.089 0.911 19 C -0.140 4.140 20 N -0.534 5.534 21 Si 0.728 3.272 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.202 1.202 25 H 0.056 0.944 26 H 0.102 0.898 27 H 0.059 0.941 28 H 0.093 0.907 29 H 0.080 0.920 30 H 0.261 0.739 31 H 0.100 0.900 32 H 0.115 0.885 33 H 0.097 0.903 34 H 0.107 0.893 35 H 0.111 0.889 36 H 0.091 0.909 37 H 0.054 0.946 38 H 0.110 0.890 39 H 0.034 0.966 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.464 -11.958 -9.194 15.476 hybrid contribution -0.032 0.373 1.452 1.500 sum -3.497 -11.584 -7.742 14.365 Atomic orbital electron populations 1.22680 0.81224 1.02371 0.99846 1.87900 1.19335 1.26620 1.95404 1.22655 0.90398 0.85575 1.02498 1.20623 0.93039 0.85039 0.91949 1.23542 0.79232 0.80103 0.84986 1.90706 1.54419 1.35503 1.57621 1.84597 1.33000 1.66656 1.47426 1.22699 1.02446 0.97776 0.92290 1.22901 1.01754 0.95017 0.97263 1.22473 0.94793 1.00905 0.84242 1.48985 1.48853 1.11803 1.25775 1.22057 0.81680 0.84581 0.78261 1.90554 1.36590 1.79535 1.34479 1.18841 0.94798 0.86526 0.97932 0.93040 1.21795 1.01000 1.01594 0.94525 1.21048 1.31917 1.04688 0.96473 0.91112 1.24912 0.94952 0.97063 0.97048 1.69866 1.33454 1.18939 1.31170 0.86509 0.78220 0.78576 0.83860 1.20220 1.21299 1.20186 0.94428 0.89765 0.94071 0.90670 0.91960 0.73870 0.90038 0.88523 0.90349 0.89258 0.88906 0.90942 0.94592 0.88995 0.96560 0.92853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 11.01 101.05 1.11 1.55 16 2 O -0.37 -5.94 8.41 -56.35 -0.47 -6.41 16 3 C 0.07 1.11 4.58 37.15 0.17 1.28 16 4 C 0.18 2.99 0.61 -132.00 -0.08 2.91 16 5 C 0.48 8.82 6.39 36.01 0.23 9.05 16 6 O -0.50 -10.10 15.84 -25.81 -0.41 -10.51 16 7 O -0.51 -8.34 13.14 -39.26 -0.52 -8.85 16 8 C -0.11 -1.37 5.93 -24.76 -0.15 -1.52 16 9 C -0.13 -1.34 7.09 -24.45 -0.17 -1.52 16 10 C 0.10 1.37 6.44 -2.53 -0.02 1.35 16 11 N -0.61 -11.06 2.59 -157.07 -0.41 -11.47 16 12 C 0.54 12.36 6.61 -10.99 -0.07 12.29 16 13 O -0.54 -13.98 13.94 5.56 0.08 -13.91 16 14 C 0.04 0.98 1.99 -92.92 -0.19 0.80 16 15 H 0.05 1.30 7.92 -51.93 -0.41 0.89 16 16 C -0.13 -2.95 8.69 37.16 0.32 -2.62 16 17 C -0.50 -14.14 8.35 -34.44 -0.29 -14.43 16 18 H 0.07 2.11 6.87 -52.49 -0.36 1.75 16 19 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 20 N -0.90 -24.65 11.40 55.43 0.63 -24.02 16 21 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 25 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.08 1.51 6.54 -51.93 -0.34 1.17 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.40 4.83 9.10 45.56 0.41 5.25 16 31 H 0.08 0.92 7.84 -51.93 -0.41 0.51 16 32 H 0.10 1.08 7.31 -51.93 -0.38 0.70 16 33 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.09 1.30 5.43 -51.93 -0.28 1.02 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.09 2.24 6.28 -51.93 -0.33 1.91 16 39 H 0.02 0.29 5.73 -51.93 -0.30 0.00 16 40 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 325.64 15.07 4.91 4.91 Total: -1.00 -34.14 325.64 -5.34 -39.48 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -4.91 Total: 3.37 kcal Atomic # 6 Polarization: 9.94 SS G_CDS: 0.78 Total: 10.72 kcal Atomic # 7 Polarization: -35.71 SS G_CDS: 0.22 Total: -35.49 kcal Atomic # 8 Polarization: -38.36 SS G_CDS: -1.32 Total: -39.68 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -34.14 -5.34 -39.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606830997.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.125 kcal (2) G-P(sol) polarization free energy of solvation -34.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds