Wall clock time and date at job start Tue Mar 31 2020 05:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 114.00363 * 2 1 4 4 C 1.52997 * 109.47310 * 179.97438 * 3 2 1 5 5 C 1.50694 * 109.99746 * 58.90660 * 4 3 2 6 6 O 1.20829 * 120.00265 * 266.09782 * 5 4 3 7 7 O 1.34229 * 120.00376 * 86.09303 * 5 4 3 8 8 C 1.54334 * 109.99238 * 297.86547 * 4 3 2 9 9 C 1.55150 * 103.02125 * 218.66510 * 8 4 3 10 10 C 1.54912 * 101.58266 * 35.30915 * 9 8 4 11 11 N 1.47022 * 109.88128 * 179.97438 * 4 3 2 12 12 C 1.34774 * 125.65205 * 298.39891 * 11 4 3 13 13 O 1.21280 * 119.99761 * 359.71500 * 12 11 4 14 14 C 1.50698 * 120.00338 * 179.71379 * 12 11 4 15 15 H 1.09007 * 109.46871 * 59.99694 * 14 12 11 16 16 C 1.53000 * 109.47177 * 300.00305 * 14 12 11 17 17 C 1.50694 * 109.47166 * 179.97438 * 14 12 11 18 18 H 1.08000 * 120.00563 * 0.02562 * 17 14 12 19 19 C 1.37885 * 119.99902 * 180.02562 * 17 14 12 20 20 N 1.31516 * 119.99913 * 359.97438 * 19 17 14 21 21 Si 1.86798 * 119.99766 * 179.97438 * 19 17 14 22 22 H 1.48506 * 109.46985 * 179.97438 * 21 19 17 23 23 H 1.48494 * 109.47276 * 299.99832 * 21 19 17 24 24 H 1.48498 * 109.47150 * 60.00043 * 21 19 17 25 25 H 1.09002 * 109.47029 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46493 * 299.99913 * 1 2 3 27 27 H 1.08997 * 109.47276 * 59.99615 * 1 2 3 28 28 H 1.09007 * 109.46727 * 59.99866 * 3 2 1 29 29 H 1.09000 * 109.46741 * 300.00643 * 3 2 1 30 30 H 0.96694 * 117.00544 * 180.02562 * 7 5 4 31 31 H 1.08999 * 110.84781 * 100.19915 * 8 4 3 32 32 H 1.08997 * 110.66909 * 337.05168 * 8 4 3 33 33 H 1.09008 * 111.00416 * 277.23560 * 9 8 4 34 34 H 1.08997 * 111.03874 * 153.40122 * 9 8 4 35 35 H 1.08997 * 110.36768 * 204.15315 * 10 9 8 36 36 H 1.09000 * 110.45899 * 81.87699 * 10 9 8 37 37 H 1.09002 * 109.47106 * 299.99721 * 16 14 12 38 38 H 1.08998 * 109.47089 * 59.99668 * 16 14 12 39 39 H 1.08995 * 109.47131 * 179.97438 * 16 14 12 40 40 H 0.97001 * 119.99646 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 3.9920 0.4146 -1.2117 6 8 4.1718 -0.7779 -1.1376 7 8 4.1987 1.0535 -2.3739 8 6 4.0075 0.4674 1.2831 9 6 5.3008 1.2376 1.6586 10 6 4.9375 2.6820 1.2324 11 7 4.1431 2.5234 0.0000 12 6 3.9939 3.4534 -0.9640 13 8 3.3132 3.2127 -1.9385 14 6 4.6726 4.7922 -0.8310 15 1 5.7513 4.6481 -0.7688 16 6 4.1777 5.4913 0.4368 17 6 4.3482 5.6415 -2.0328 18 1 3.7136 5.2510 -2.8146 19 6 4.8615 6.9172 -2.1344 20 7 5.6339 7.3929 -1.1822 21 14 4.4599 7.9696 -3.6245 22 1 5.1287 9.2890 -3.4934 23 1 4.9408 7.2904 -4.8543 24 1 2.9905 8.1663 -3.7100 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.6886 1.8464 0.8901 29 1 1.6886 1.8464 -0.8899 30 1 4.4907 0.5173 -3.1238 31 1 4.2275 -0.5812 1.0826 32 1 3.2611 0.5592 2.0721 33 1 6.1551 0.8663 1.0923 34 1 5.4917 1.1829 2.7303 35 1 5.8414 3.2563 1.0295 36 1 4.3446 3.1698 2.0061 37 1 3.0990 5.6354 0.3747 38 1 4.4127 4.8768 1.3059 39 1 4.6690 6.4594 0.5332 40 1 5.9954 8.2902 -1.2538 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606830998.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:49 Heat of formation + Delta-G solvation = -160.156603 kcal Electronic energy + Delta-G solvation = -24586.783053 eV Core-core repulsion = 20981.307697 eV Total energy + Delta-G solvation = -3605.475356 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.85401 -38.82980 -37.75123 -36.70323 -35.62104 -33.83434 -31.60987 -31.03074 -29.77718 -26.89082 -25.27677 -24.93991 -24.10752 -22.91052 -21.63947 -20.10630 -18.79068 -17.60414 -17.04098 -16.27067 -16.08868 -16.05933 -15.61542 -15.21344 -14.71902 -14.62451 -14.28065 -13.77336 -13.51604 -13.29614 -12.94336 -12.89262 -12.43844 -12.26868 -12.03936 -11.56567 -11.47049 -11.17284 -11.13342 -11.01054 -10.96675 -10.82866 -10.75134 -10.46710 -10.34334 -10.22578 -9.97144 -9.66239 -8.99262 -8.60370 -8.33667 -8.26752 -6.04459 -4.07384 2.44992 3.11471 3.30240 3.35190 3.37795 3.43959 3.72279 4.02680 4.40317 4.47584 4.59908 4.92066 5.13009 5.24527 5.28685 5.30315 5.37313 5.41325 5.57348 5.59196 5.68249 5.82223 5.85977 5.91492 5.97992 6.05057 6.20420 6.56856 6.66424 6.83265 6.85694 6.93853 7.06164 7.45544 7.73080 7.96282 8.08954 8.27890 8.35843 9.00764 9.18041 9.57886 11.03132 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.021204 B = 0.005513 C = 0.005180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.180861 B = 5078.081550 C = 5404.554502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.386 6.386 3 C 0.059 3.941 4 C 0.180 3.820 5 C 0.487 3.513 6 O -0.521 6.521 7 O -0.477 6.477 8 C -0.112 4.112 9 C -0.139 4.139 10 C 0.104 3.896 11 N -0.620 5.620 12 C 0.535 3.465 13 O -0.509 6.509 14 C 0.039 3.961 15 H 0.051 0.949 16 C -0.140 4.140 17 C -0.500 4.500 18 H 0.074 0.926 19 C 0.059 3.941 20 N -0.896 5.896 21 Si 0.900 3.100 22 H -0.288 1.288 23 H -0.277 1.277 24 H -0.277 1.277 25 H 0.086 0.914 26 H 0.041 0.959 27 H 0.042 0.958 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.396 0.604 31 H 0.099 0.901 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.073 0.927 37 H 0.029 0.971 38 H 0.020 0.980 39 H 0.093 0.907 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.770 -11.629 7.632 14.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.304 6.304 3 C -0.019 4.019 4 C 0.092 3.908 5 C 0.327 3.673 6 O -0.409 6.409 7 O -0.285 6.285 8 C -0.150 4.150 9 C -0.177 4.177 10 C -0.019 4.019 11 N -0.360 5.360 12 C 0.327 3.673 13 O -0.382 6.382 14 C 0.018 3.982 15 H 0.069 0.931 16 C -0.197 4.197 17 C -0.539 4.539 18 H 0.092 0.908 19 C -0.142 4.142 20 N -0.536 5.536 21 Si 0.728 3.272 22 H -0.214 1.214 23 H -0.202 1.202 24 H -0.203 1.203 25 H 0.104 0.896 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.085 0.915 29 H 0.094 0.906 30 H 0.253 0.747 31 H 0.118 0.882 32 H 0.106 0.894 33 H 0.093 0.907 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.091 0.909 37 H 0.048 0.952 38 H 0.039 0.961 39 H 0.111 0.889 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.036 -11.734 7.371 14.433 hybrid contribution -0.224 0.483 -1.228 1.339 sum -4.260 -11.251 6.143 13.508 Atomic orbital electron populations 1.22735 0.80757 1.02616 1.00195 1.87887 1.19877 1.27096 1.95566 1.22838 0.90864 0.85301 1.02914 1.20510 0.93047 0.85379 0.91823 1.23543 0.72718 0.86161 0.84830 1.90637 1.48651 1.16419 1.85225 1.84963 1.78663 1.44620 1.20206 1.22667 0.97715 1.00795 0.93791 1.22918 0.97600 0.95031 1.02182 1.22434 0.96225 0.96643 0.86608 1.49103 1.51364 1.12488 1.23091 1.21966 0.80367 0.85393 0.79612 1.90559 1.39246 1.78761 1.29585 1.18816 0.96143 0.86211 0.97014 0.93089 1.21885 0.99782 1.03258 0.94822 1.21101 1.30502 0.98006 1.04267 0.90799 1.24934 0.94977 0.97710 0.96542 1.69859 1.33603 1.17346 1.32779 0.86511 0.78572 0.79042 0.83027 1.21396 1.20209 1.20261 0.89572 0.93999 0.93923 0.91547 0.90597 0.74726 0.88218 0.89372 0.90668 0.89338 0.89426 0.90925 0.95185 0.96074 0.88865 0.92913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 101.05 1.11 1.49 16 2 O -0.39 -5.81 10.03 -35.23 -0.35 -6.17 16 3 C 0.06 0.93 4.73 37.16 0.18 1.10 16 4 C 0.18 2.95 0.62 -131.99 -0.08 2.86 16 5 C 0.49 8.77 6.82 36.00 0.25 9.02 16 6 O -0.52 -9.80 16.37 -18.75 -0.31 -10.11 16 7 O -0.48 -8.74 10.07 -47.02 -0.47 -9.21 16 8 C -0.11 -1.44 5.70 -24.89 -0.14 -1.58 16 9 C -0.14 -1.58 7.09 -24.58 -0.17 -1.76 16 10 C 0.10 1.45 5.14 -2.50 -0.01 1.44 16 11 N -0.62 -10.98 2.80 -157.02 -0.44 -11.42 16 12 C 0.53 11.87 6.37 -10.99 -0.07 11.80 16 13 O -0.51 -12.59 11.99 -17.89 -0.21 -12.81 16 14 C 0.04 0.95 1.99 -92.93 -0.18 0.76 16 15 H 0.05 1.29 7.85 -51.92 -0.41 0.89 16 16 C -0.14 -3.08 8.78 37.16 0.33 -2.76 16 17 C -0.50 -13.87 8.37 -34.44 -0.29 -14.16 16 18 H 0.07 2.16 6.75 -52.49 -0.35 1.81 16 19 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 20 N -0.90 -24.66 11.32 55.43 0.63 -24.03 16 21 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.93 8.13 -51.92 -0.42 0.51 16 29 H 0.08 1.40 6.85 -51.93 -0.36 1.04 16 30 H 0.40 5.35 9.10 45.56 0.41 5.76 16 31 H 0.10 1.36 6.79 -51.93 -0.35 1.01 16 32 H 0.09 0.97 7.84 -51.93 -0.41 0.57 16 33 H 0.07 0.89 8.14 -51.92 -0.42 0.47 16 34 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.09 1.27 7.36 -51.93 -0.38 0.89 16 36 H 0.07 0.92 7.07 -51.93 -0.37 0.55 16 37 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.02 0.38 4.99 -51.93 -0.26 0.12 16 39 H 0.09 2.28 6.07 -51.93 -0.32 1.97 16 40 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 321.33 15.07 4.84 4.84 Total: -1.00 -32.91 321.33 -5.41 -38.32 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -4.88 Total: 4.31 kcal Atomic # 6 Polarization: 8.93 SS G_CDS: 0.81 Total: 9.74 kcal Atomic # 7 Polarization: -35.64 SS G_CDS: 0.19 Total: -35.45 kcal Atomic # 8 Polarization: -36.95 SS G_CDS: -1.35 Total: -38.30 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -32.91 -5.41 -38.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606830998.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.837 kcal (2) G-P(sol) polarization free energy of solvation -32.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds