Wall clock time and date at job start Tue Mar 31 2020 05:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 114.00363 * 2 1 4 4 C 1.52997 * 109.47310 * 179.97438 * 3 2 1 5 5 C 1.50694 * 109.99746 * 58.90660 * 4 3 2 6 6 O 1.20829 * 120.00265 * 266.09782 * 5 4 3 7 7 O 1.34229 * 120.00376 * 86.09303 * 5 4 3 8 8 C 1.54334 * 109.99238 * 297.86547 * 4 3 2 9 9 C 1.55150 * 103.02125 * 218.66510 * 8 4 3 10 10 C 1.54912 * 101.58266 * 35.30915 * 9 8 4 11 11 N 1.47022 * 109.88128 * 179.97438 * 4 3 2 12 12 C 1.34774 * 125.65205 * 298.39891 * 11 4 3 13 13 O 1.21280 * 119.99761 * 359.71500 * 12 11 4 14 14 C 1.50698 * 120.00338 * 179.71379 * 12 11 4 15 15 H 1.09007 * 109.46871 * 59.99694 * 14 12 11 16 16 C 1.53000 * 109.47177 * 300.00305 * 14 12 11 17 17 C 1.50694 * 109.47166 * 179.97438 * 14 12 11 18 18 H 1.08000 * 120.00563 * 0.02562 * 17 14 12 19 19 C 1.37885 * 119.99902 * 180.02562 * 17 14 12 20 20 N 1.31516 * 119.99913 * 359.97438 * 19 17 14 21 21 Si 1.86798 * 119.99766 * 179.97438 * 19 17 14 22 22 H 1.48506 * 109.46985 * 179.97438 * 21 19 17 23 23 H 1.48494 * 109.47276 * 299.99832 * 21 19 17 24 24 H 1.48498 * 109.47150 * 60.00043 * 21 19 17 25 25 H 1.09002 * 109.47029 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46493 * 299.99913 * 1 2 3 27 27 H 1.08997 * 109.47276 * 59.99615 * 1 2 3 28 28 H 1.09007 * 109.46727 * 59.99866 * 3 2 1 29 29 H 1.09000 * 109.46741 * 300.00643 * 3 2 1 30 30 H 0.96694 * 117.00544 * 180.02562 * 7 5 4 31 31 H 1.08999 * 110.84781 * 100.19915 * 8 4 3 32 32 H 1.08997 * 110.66909 * 337.05168 * 8 4 3 33 33 H 1.09008 * 111.00416 * 277.23560 * 9 8 4 34 34 H 1.08997 * 111.03874 * 153.40122 * 9 8 4 35 35 H 1.08997 * 110.36768 * 204.15315 * 10 9 8 36 36 H 1.09000 * 110.45899 * 81.87699 * 10 9 8 37 37 H 1.09002 * 109.47106 * 299.99721 * 16 14 12 38 38 H 1.08998 * 109.47089 * 59.99668 * 16 14 12 39 39 H 1.08995 * 109.47131 * 179.97438 * 16 14 12 40 40 H 0.97001 * 119.99646 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 6 3.9920 0.4146 -1.2117 6 8 4.1718 -0.7779 -1.1376 7 8 4.1987 1.0535 -2.3739 8 6 4.0075 0.4674 1.2831 9 6 5.3008 1.2376 1.6586 10 6 4.9375 2.6820 1.2324 11 7 4.1431 2.5234 0.0000 12 6 3.9939 3.4534 -0.9640 13 8 3.3132 3.2127 -1.9385 14 6 4.6726 4.7922 -0.8310 15 1 5.7513 4.6481 -0.7688 16 6 4.1777 5.4913 0.4368 17 6 4.3482 5.6415 -2.0328 18 1 3.7136 5.2510 -2.8146 19 6 4.8615 6.9172 -2.1344 20 7 5.6339 7.3929 -1.1822 21 14 4.4599 7.9696 -3.6245 22 1 5.1287 9.2890 -3.4934 23 1 4.9408 7.2904 -4.8543 24 1 2.9905 8.1663 -3.7100 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.6886 1.8464 0.8901 29 1 1.6886 1.8464 -0.8899 30 1 4.4907 0.5173 -3.1238 31 1 4.2275 -0.5812 1.0826 32 1 3.2611 0.5592 2.0721 33 1 6.1551 0.8663 1.0923 34 1 5.4917 1.1829 2.7303 35 1 5.8414 3.2563 1.0295 36 1 4.3446 3.1698 2.0061 37 1 3.0990 5.6354 0.3747 38 1 4.4127 4.8768 1.3059 39 1 4.6690 6.4594 0.5332 40 1 5.9954 8.2902 -1.2538 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606830998.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:48 Heat of formation + Delta-G solvation = -183.086207 kcal Electronic energy + Delta-G solvation = -24587.777356 eV Core-core repulsion = 20981.307697 eV Total energy + Delta-G solvation = -3606.469658 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.20993 -40.34432 -39.01572 -38.03297 -37.06954 -35.78318 -33.25797 -32.20086 -31.42266 -27.90786 -27.16376 -26.23167 -25.46517 -24.43094 -22.98297 -21.49583 -20.22661 -18.99533 -18.49579 -18.08323 -17.65870 -17.22965 -16.97758 -16.71994 -16.19761 -15.91809 -15.84842 -15.10010 -15.05011 -14.63311 -14.44121 -14.09004 -13.93872 -13.57903 -13.35558 -13.16628 -12.92150 -12.68924 -12.57698 -12.55265 -12.44864 -12.20000 -12.11850 -12.03851 -11.96255 -11.76080 -11.61818 -10.99298 -10.80408 -10.54430 -10.20381 -9.70550 -8.12725 -6.22171 1.04892 1.42234 1.43018 1.51368 1.77318 1.92957 2.19929 2.45240 2.83490 3.17264 3.27976 3.52275 3.82680 4.11270 4.15039 4.23407 4.31918 4.35454 4.47037 4.50392 4.56374 4.75394 4.77609 4.79644 4.84661 4.92560 5.02562 5.08064 5.08915 5.24997 5.34494 5.52558 5.55603 5.77109 5.95916 6.01040 6.24307 6.62419 6.86348 6.95728 7.42578 7.53250 8.92821 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.021204 B = 0.005513 C = 0.005180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.180861 B = 5078.081550 C = 5404.554502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.401 6.401 3 C 0.066 3.934 4 C 0.172 3.828 5 C 0.481 3.519 6 O -0.533 6.533 7 O -0.496 6.496 8 C -0.104 4.104 9 C -0.124 4.124 10 C 0.091 3.909 11 N -0.615 5.615 12 C 0.536 3.464 13 O -0.545 6.545 14 C 0.036 3.964 15 H 0.035 0.965 16 C -0.125 4.125 17 C -0.526 4.526 18 H 0.049 0.951 19 C 0.022 3.978 20 N -0.909 5.909 21 Si 0.952 3.048 22 H -0.275 1.275 23 H -0.279 1.279 24 H -0.277 1.277 25 H 0.107 0.893 26 H 0.062 0.938 27 H 0.036 0.964 28 H 0.088 0.912 29 H 0.041 0.959 30 H 0.411 0.589 31 H 0.094 0.906 32 H 0.115 0.885 33 H 0.068 0.932 34 H 0.130 0.870 35 H 0.081 0.919 36 H 0.096 0.904 37 H 0.021 0.979 38 H 0.062 0.938 39 H 0.069 0.931 40 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.962 -12.267 9.689 16.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.319 6.319 3 C -0.012 4.012 4 C 0.084 3.916 5 C 0.323 3.677 6 O -0.423 6.423 7 O -0.306 6.306 8 C -0.142 4.142 9 C -0.162 4.162 10 C -0.030 4.030 11 N -0.354 5.354 12 C 0.328 3.672 13 O -0.420 6.420 14 C 0.015 3.985 15 H 0.053 0.947 16 C -0.183 4.183 17 C -0.565 4.565 18 H 0.067 0.933 19 C -0.177 4.177 20 N -0.549 5.549 21 Si 0.778 3.222 22 H -0.200 1.200 23 H -0.204 1.204 24 H -0.202 1.202 25 H 0.125 0.875 26 H 0.080 0.920 27 H 0.054 0.946 28 H 0.106 0.894 29 H 0.060 0.940 30 H 0.270 0.730 31 H 0.112 0.888 32 H 0.133 0.867 33 H 0.086 0.914 34 H 0.148 0.852 35 H 0.099 0.901 36 H 0.114 0.886 37 H 0.040 0.960 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.210 -12.394 9.464 16.152 hybrid contribution -0.176 0.606 -1.884 1.987 sum -4.386 -11.788 7.579 14.685 Atomic orbital electron populations 1.22985 0.78852 1.04255 1.00899 1.87864 1.21969 1.26441 1.95639 1.22682 0.90570 0.85702 1.02249 1.20888 0.93515 0.84417 0.92745 1.23974 0.72299 0.86226 0.85159 1.90618 1.49291 1.16861 1.85496 1.84959 1.78753 1.45686 1.21213 1.22725 0.99053 0.99977 0.92398 1.22919 0.96441 0.92259 1.04575 1.22781 0.95896 0.98936 0.85412 1.48853 1.51120 1.12302 1.23144 1.21414 0.80053 0.85604 0.80160 1.90538 1.40751 1.79502 1.31254 1.18702 0.95393 0.87580 0.96796 0.94680 1.21694 0.98685 1.02486 0.95425 1.21257 1.30759 0.99152 1.05297 0.93292 1.25536 0.94865 0.98509 0.98836 1.69938 1.33678 1.17620 1.33634 0.85708 0.78330 0.78023 0.80123 1.20025 1.20428 1.20234 0.87509 0.91955 0.94561 0.89418 0.94022 0.73022 0.88780 0.86708 0.91366 0.85151 0.90107 0.88586 0.96010 0.91964 0.91230 0.92654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 11.01 113.37 1.25 1.78 16 2 O -0.40 -11.45 10.03 -148.98 -1.49 -12.94 16 3 C 0.07 2.02 4.73 71.98 0.34 2.36 16 4 C 0.17 5.38 0.62 3.21 0.00 5.39 16 5 C 0.48 17.28 6.82 71.23 0.49 17.77 16 6 O -0.53 -19.80 16.37 21.95 0.36 -19.44 16 7 O -0.50 -18.67 10.07 -43.99 -0.44 -19.11 16 8 C -0.10 -2.34 5.70 31.78 0.18 -2.16 16 9 C -0.12 -2.36 7.09 31.98 0.23 -2.13 16 10 C 0.09 2.29 5.14 86.85 0.45 2.74 16 11 N -0.62 -21.18 2.80 -769.10 -2.16 -23.34 16 12 C 0.54 24.14 6.37 87.66 0.56 24.70 16 13 O -0.54 -27.89 11.99 19.39 0.23 -27.66 16 14 C 0.04 1.79 1.99 -12.29 -0.02 1.77 16 15 H 0.04 1.83 7.85 -2.38 -0.02 1.81 16 16 C -0.13 -5.46 8.78 71.98 0.63 -4.83 16 17 C -0.53 -29.97 8.37 25.60 0.21 -29.75 16 18 H 0.05 2.98 6.75 -2.91 -0.02 2.96 16 19 C 0.02 1.20 5.30 84.66 0.45 1.65 16 20 N -0.91 -50.18 11.32 21.45 0.24 -49.94 16 21 Si 0.95 44.54 29.54 68.60 2.03 46.57 16 22 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 23 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 24 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 25 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.04 0.78 8.14 -2.39 -0.02 0.77 16 28 H 0.09 2.26 8.13 -2.38 -0.02 2.24 16 29 H 0.04 1.56 6.85 -2.39 -0.02 1.54 16 30 H 0.41 11.55 9.10 -74.06 -0.67 10.87 16 31 H 0.09 2.31 6.79 -2.39 -0.02 2.29 16 32 H 0.11 2.00 7.84 -2.39 -0.02 1.98 16 33 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 34 H 0.13 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.08 2.18 7.36 -2.39 -0.02 2.17 16 36 H 0.10 2.02 7.07 -2.39 -0.02 2.00 16 37 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.06 2.13 4.99 -2.39 -0.01 2.12 16 39 H 0.07 3.39 6.07 -2.39 -0.01 3.37 16 40 H 0.26 13.87 8.31 -92.71 -0.77 13.10 16 Total: -1.00 -72.78 321.33 3.92 -68.86 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: 0.39 Total: 17.72 kcal Atomic # 6 Polarization: 14.52 SS G_CDS: 4.76 Total: 19.28 kcal Atomic # 7 Polarization: -71.37 SS G_CDS: -1.91 Total: -73.28 kcal Atomic # 8 Polarization: -77.80 SS G_CDS: -1.35 Total: -79.15 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -72.78 3.92 -68.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606830998.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.226 kcal (2) G-P(sol) polarization free energy of solvation -72.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds