Wall clock time and date at job start Tue Mar 31 2020 06:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42904 * 114.00276 * 2 1 4 4 C 1.52991 * 109.47361 * 184.60752 * 3 2 1 5 5 C 1.53001 * 109.47323 * 185.15312 * 4 3 2 6 6 C 1.50695 * 115.55200 * 305.71168 * 5 4 3 7 7 O 1.21294 * 119.99931 * 114.17594 * 6 5 4 8 8 N 1.34775 * 119.99980 * 293.90615 * 6 5 4 9 9 C 1.37100 * 119.99803 * 355.16348 * 8 6 5 10 10 H 1.08000 * 120.00486 * 324.03341 * 9 8 6 11 11 C 1.38944 * 120.00184 * 144.03271 * 9 8 6 12 12 N 1.31416 * 119.99817 * 337.60404 * 11 9 8 13 13 Si 1.86799 * 120.00408 * 157.59969 * 11 9 8 14 14 H 1.48497 * 109.47202 * 65.00206 * 13 11 9 15 15 H 1.48495 * 109.47617 * 185.00368 * 13 11 9 16 16 H 1.48503 * 109.47218 * 305.00450 * 13 11 9 17 17 C 1.46501 * 120.00362 * 175.16773 * 8 6 5 18 18 C 1.53005 * 109.47058 * 88.57939 * 17 8 6 19 19 C 1.50693 * 109.47085 * 180.02562 * 18 17 8 20 20 O 1.20824 * 120.00114 * 0.02562 * 19 18 17 21 21 O 1.34227 * 119.99975 * 179.97438 * 19 18 17 22 22 C 1.53007 * 117.49716 * 91.37910 * 5 4 3 23 23 C 1.53006 * 117.49961 * 160.03647 * 5 4 3 24 24 H 1.09002 * 109.47129 * 184.71592 * 1 2 3 25 25 H 1.09005 * 109.46706 * 304.71173 * 1 2 3 26 26 H 1.08997 * 109.47146 * 64.70979 * 1 2 3 27 27 H 1.09002 * 109.46591 * 64.61113 * 3 2 1 28 28 H 1.08994 * 109.47198 * 304.61016 * 3 2 1 29 29 H 1.08999 * 109.47327 * 65.15436 * 4 3 2 30 30 H 1.09006 * 109.47370 * 305.15505 * 4 3 2 31 31 H 0.97005 * 120.00100 * 179.97438 * 12 11 9 32 32 H 1.08994 * 109.47461 * 208.57648 * 17 8 6 33 33 H 1.08993 * 109.47168 * 328.58320 * 17 8 6 34 34 H 1.08998 * 109.47226 * 300.00250 * 18 17 8 35 35 H 1.08997 * 109.47283 * 60.00095 * 18 17 8 36 36 H 0.96701 * 116.99871 * 180.02562 * 21 19 18 37 37 H 1.08995 * 117.49834 * 215.00320 * 22 5 4 38 38 H 1.09003 * 117.49769 * 0.02562 * 22 5 4 39 39 H 1.09000 * 117.49713 * 359.97438 * 23 5 4 40 40 H 1.09003 * 117.49649 * 144.97670 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5311 1.1866 -0.1159 5 6 4.1626 2.5742 0.0131 6 6 3.6371 3.6184 -0.9379 7 8 3.0241 4.5740 -0.5110 8 7 3.8530 3.4932 -2.2624 9 6 4.6340 2.4709 -2.7360 10 1 5.4951 2.1434 -2.1723 11 6 4.3178 1.8559 -3.9411 12 7 3.0905 1.9155 -4.4070 13 14 5.6373 0.9445 -4.8992 14 1 6.0962 -0.2300 -4.1150 15 1 5.0793 0.4859 -6.1967 16 1 6.7854 1.8531 -5.1476 17 6 3.2531 4.4497 -3.1960 18 6 4.1962 5.6400 -3.3828 19 6 3.5789 6.6241 -4.3426 20 8 2.4956 6.3971 -4.8272 21 8 4.2320 7.7534 -4.6584 22 6 4.5732 3.0362 1.4128 23 6 5.6435 2.6442 0.3911 24 1 -0.3633 -1.0242 0.0845 25 1 -0.3633 0.5852 0.8448 26 1 -0.3633 0.4390 -0.9291 27 1 1.7555 1.8165 0.9285 28 1 1.6249 1.8748 -0.8458 29 1 3.7894 0.7585 -1.0845 30 1 3.9067 0.5412 0.6783 31 1 2.8698 1.4865 -5.2486 32 1 3.0869 3.9637 -4.1573 33 1 2.3014 4.7995 -2.7963 34 1 4.3625 6.1261 -2.4215 35 1 5.1480 5.2903 -3.7825 36 1 3.7959 8.3542 -5.2781 37 1 4.4633 4.0953 1.6456 38 1 4.3939 2.3513 2.2416 39 1 6.1679 1.7016 0.5482 40 1 6.2378 3.4452 -0.0486 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606863234.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:44 Heat of formation + Delta-G solvation = -150.374545 kcal Electronic energy + Delta-G solvation = -23854.546500 eV Core-core repulsion = 20249.495326 eV Total energy + Delta-G solvation = -3605.051174 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.88282 -39.26537 -37.34160 -36.22292 -35.70425 -34.85154 -31.96431 -30.70485 -30.25637 -26.18168 -25.26246 -24.62619 -22.80158 -21.90893 -21.42998 -20.14787 -18.72739 -17.77177 -16.71955 -16.17119 -15.87440 -15.79577 -15.48645 -15.37069 -14.75137 -14.45871 -14.28370 -14.11367 -13.45577 -13.18599 -12.81211 -12.65489 -12.41326 -11.83402 -11.73887 -11.50561 -11.27944 -11.17396 -11.08579 -11.07500 -10.92647 -10.72744 -10.66061 -10.45429 -10.16560 -10.08352 -9.81637 -9.34728 -9.18260 -9.07383 -8.48046 -7.64166 -6.43273 -4.11592 2.65114 3.09508 3.20069 3.20345 3.39385 3.71981 4.07449 4.10908 4.41857 4.71579 4.92187 5.36116 5.45205 5.54765 5.57472 5.60486 5.68845 5.76676 5.81933 5.90698 5.92710 6.04184 6.08446 6.10958 6.24162 6.31718 6.35938 6.50198 6.61214 6.66937 6.81042 6.87255 6.98874 7.27097 7.44191 7.62914 7.80124 8.27882 8.32425 9.01743 9.41397 9.83854 10.58322 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.012073 B = 0.006709 C = 0.005805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2318.654688 B = 4172.235161 C = 4822.574610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.394 6.394 3 C 0.070 3.930 4 C -0.068 4.068 5 C -0.110 4.110 6 C 0.502 3.498 7 O -0.602 6.602 8 N -0.429 5.429 9 C -0.342 4.342 10 H 0.096 0.904 11 C 0.047 3.953 12 N -0.849 5.849 13 Si 0.909 3.091 14 H -0.271 1.271 15 H -0.284 1.284 16 H -0.272 1.272 17 C 0.126 3.874 18 C -0.124 4.124 19 C 0.483 3.517 20 O -0.515 6.515 21 O -0.525 6.525 22 C -0.165 4.165 23 C -0.156 4.156 24 H 0.079 0.921 25 H 0.035 0.965 26 H 0.041 0.959 27 H 0.041 0.959 28 H 0.056 0.944 29 H 0.098 0.902 30 H 0.062 0.938 31 H 0.272 0.728 32 H 0.117 0.883 33 H 0.063 0.937 34 H 0.097 0.903 35 H 0.105 0.895 36 H 0.401 0.599 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.455 1.198 3.702 4.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.314 6.314 3 C -0.006 4.006 4 C -0.105 4.105 5 C -0.113 4.113 6 C 0.291 3.709 7 O -0.488 6.488 8 N -0.146 5.146 9 C -0.469 4.469 10 H 0.113 0.887 11 C -0.161 4.161 12 N -0.484 5.484 13 Si 0.735 3.265 14 H -0.196 1.196 15 H -0.209 1.209 16 H -0.197 1.197 17 C 0.002 3.998 18 C -0.163 4.163 19 C 0.325 3.675 20 O -0.402 6.402 21 O -0.336 6.336 22 C -0.202 4.202 23 C -0.194 4.194 24 H 0.097 0.903 25 H 0.054 0.946 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.117 0.883 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.134 0.866 33 H 0.081 0.919 34 H 0.116 0.884 35 H 0.123 0.877 36 H 0.259 0.741 37 H 0.114 0.886 38 H 0.110 0.890 39 H 0.113 0.887 40 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.025 1.083 3.843 4.477 hybrid contribution 0.115 0.148 -1.096 1.112 sum 2.141 1.231 2.747 3.694 Atomic orbital electron populations 1.22647 0.81821 1.01774 0.99951 1.87797 1.19119 1.28980 1.95460 1.22450 0.94423 0.83628 1.00087 1.20867 0.92319 0.93193 1.04164 1.20966 0.97962 0.96261 0.96154 1.19461 0.81774 0.86211 0.83474 1.90535 1.45902 1.34317 1.78050 1.43348 1.43998 1.24049 1.03195 1.19407 1.07867 1.12995 1.06669 0.88657 1.25365 0.95695 0.96352 0.98675 1.69928 1.16759 1.41018 1.20739 0.86288 0.81176 0.79908 0.79161 1.19590 1.20934 1.19709 1.21198 0.93418 0.87028 0.98195 1.21854 1.02448 0.94643 0.97393 1.23801 0.83315 0.80225 0.80143 1.90701 1.21831 1.75754 1.51939 1.84593 1.53347 1.32738 1.62942 1.23007 1.03129 1.02066 0.91993 1.22901 0.90929 1.02882 1.02674 0.90287 0.94622 0.94054 0.94078 0.92614 0.88344 0.91953 0.91782 0.86571 0.91889 0.88443 0.87711 0.74148 0.88602 0.88998 0.88715 0.88872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 11.01 101.05 1.11 1.64 16 2 O -0.39 -7.46 10.70 -35.23 -0.38 -7.83 16 3 C 0.07 1.39 5.58 37.15 0.21 1.59 16 4 C -0.07 -1.30 5.33 -26.74 -0.14 -1.45 16 5 C -0.11 -2.15 1.05 -155.66 -0.16 -2.31 16 6 C 0.50 11.63 5.92 -10.99 -0.07 11.56 16 7 O -0.60 -15.33 16.36 5.54 0.09 -15.23 16 8 N -0.43 -10.12 2.53 -114.82 -0.29 -10.41 16 9 C -0.34 -8.01 7.20 -14.93 -0.11 -8.11 16 10 H 0.10 2.14 6.64 -52.49 -0.35 1.79 16 11 C 0.05 1.11 4.93 -17.47 -0.09 1.02 16 12 N -0.85 -21.67 11.43 55.50 0.63 -21.04 16 13 Si 0.91 18.70 29.61 -169.99 -5.03 13.67 16 14 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 15 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 16 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 17 C 0.13 2.93 4.23 -4.04 -0.02 2.92 16 18 C -0.12 -2.42 6.13 -27.88 -0.17 -2.59 16 19 C 0.48 8.82 8.33 36.00 0.30 9.12 16 20 O -0.51 -10.93 16.74 -18.75 -0.31 -11.24 16 21 O -0.52 -7.47 13.42 -39.25 -0.53 -8.00 16 22 C -0.16 -2.73 9.74 -26.69 -0.26 -2.99 16 23 C -0.16 -2.57 9.01 -26.69 -0.24 -2.81 16 24 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 25 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.06 1.26 7.61 -51.93 -0.40 0.87 16 29 H 0.10 2.12 6.81 -51.93 -0.35 1.76 16 30 H 0.06 1.06 8.09 -51.93 -0.42 0.64 16 31 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 32 H 0.12 2.95 5.42 -51.93 -0.28 2.66 16 33 H 0.06 1.58 7.50 -51.93 -0.39 1.19 16 34 H 0.10 1.87 8.14 -51.93 -0.42 1.45 16 35 H 0.10 1.94 8.14 -51.93 -0.42 1.51 16 36 H 0.40 3.76 9.10 45.56 0.41 4.18 16 37 H 0.10 1.66 8.00 -51.93 -0.42 1.24 16 38 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 40 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 LS Contribution 341.33 15.07 5.14 5.14 Total: -1.00 -29.92 341.33 -5.43 -35.35 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: -5.13 Total: 12.00 kcal Atomic # 6 Polarization: 7.23 SS G_CDS: 0.37 Total: 7.60 kcal Atomic # 7 Polarization: -31.80 SS G_CDS: 0.34 Total: -31.45 kcal Atomic # 8 Polarization: -41.18 SS G_CDS: -1.13 Total: -42.31 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.03 Total: 13.67 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.92 -5.43 -35.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606863234.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.023 kcal (2) G-P(sol) polarization free energy of solvation -29.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds