Wall clock time and date at job start Tue Mar 31 2020 06:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42904 * 114.00276 * 2 1 4 4 C 1.52991 * 109.47361 * 184.60752 * 3 2 1 5 5 C 1.53001 * 109.47323 * 185.15312 * 4 3 2 6 6 C 1.50695 * 115.55200 * 305.71168 * 5 4 3 7 7 O 1.21294 * 119.99931 * 114.17594 * 6 5 4 8 8 N 1.34775 * 119.99980 * 293.90615 * 6 5 4 9 9 C 1.37100 * 119.99803 * 355.16348 * 8 6 5 10 10 H 1.08000 * 120.00486 * 324.03341 * 9 8 6 11 11 C 1.38944 * 120.00184 * 144.03271 * 9 8 6 12 12 N 1.31416 * 119.99817 * 337.60404 * 11 9 8 13 13 Si 1.86799 * 120.00408 * 157.59969 * 11 9 8 14 14 H 1.48497 * 109.47202 * 65.00206 * 13 11 9 15 15 H 1.48495 * 109.47617 * 185.00368 * 13 11 9 16 16 H 1.48503 * 109.47218 * 305.00450 * 13 11 9 17 17 C 1.46501 * 120.00362 * 175.16773 * 8 6 5 18 18 C 1.53005 * 109.47058 * 88.57939 * 17 8 6 19 19 C 1.50693 * 109.47085 * 180.02562 * 18 17 8 20 20 O 1.20824 * 120.00114 * 0.02562 * 19 18 17 21 21 O 1.34227 * 119.99975 * 179.97438 * 19 18 17 22 22 C 1.53007 * 117.49716 * 91.37910 * 5 4 3 23 23 C 1.53006 * 117.49961 * 160.03647 * 5 4 3 24 24 H 1.09002 * 109.47129 * 184.71592 * 1 2 3 25 25 H 1.09005 * 109.46706 * 304.71173 * 1 2 3 26 26 H 1.08997 * 109.47146 * 64.70979 * 1 2 3 27 27 H 1.09002 * 109.46591 * 64.61113 * 3 2 1 28 28 H 1.08994 * 109.47198 * 304.61016 * 3 2 1 29 29 H 1.08999 * 109.47327 * 65.15436 * 4 3 2 30 30 H 1.09006 * 109.47370 * 305.15505 * 4 3 2 31 31 H 0.97005 * 120.00100 * 179.97438 * 12 11 9 32 32 H 1.08994 * 109.47461 * 208.57648 * 17 8 6 33 33 H 1.08993 * 109.47168 * 328.58320 * 17 8 6 34 34 H 1.08998 * 109.47226 * 300.00250 * 18 17 8 35 35 H 1.08997 * 109.47283 * 60.00095 * 18 17 8 36 36 H 0.96701 * 116.99871 * 180.02562 * 21 19 18 37 37 H 1.08995 * 117.49834 * 215.00320 * 22 5 4 38 38 H 1.09003 * 117.49769 * 0.02562 * 22 5 4 39 39 H 1.09000 * 117.49713 * 359.97438 * 23 5 4 40 40 H 1.09003 * 117.49649 * 144.97670 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5311 1.1866 -0.1159 5 6 4.1626 2.5742 0.0131 6 6 3.6371 3.6184 -0.9379 7 8 3.0241 4.5740 -0.5110 8 7 3.8530 3.4932 -2.2624 9 6 4.6340 2.4709 -2.7360 10 1 5.4951 2.1434 -2.1723 11 6 4.3178 1.8559 -3.9411 12 7 3.0905 1.9155 -4.4070 13 14 5.6373 0.9445 -4.8992 14 1 6.0962 -0.2300 -4.1150 15 1 5.0793 0.4859 -6.1967 16 1 6.7854 1.8531 -5.1476 17 6 3.2531 4.4497 -3.1960 18 6 4.1962 5.6400 -3.3828 19 6 3.5789 6.6241 -4.3426 20 8 2.4956 6.3971 -4.8272 21 8 4.2320 7.7534 -4.6584 22 6 4.5732 3.0362 1.4128 23 6 5.6435 2.6442 0.3911 24 1 -0.3633 -1.0242 0.0845 25 1 -0.3633 0.5852 0.8448 26 1 -0.3633 0.4390 -0.9291 27 1 1.7555 1.8165 0.9285 28 1 1.6249 1.8748 -0.8458 29 1 3.7894 0.7585 -1.0845 30 1 3.9067 0.5412 0.6783 31 1 2.8698 1.4865 -5.2486 32 1 3.0869 3.9637 -4.1573 33 1 2.3014 4.7995 -2.7963 34 1 4.3625 6.1261 -2.4215 35 1 5.1480 5.2903 -3.7825 36 1 3.7959 8.3542 -5.2781 37 1 4.4633 4.0953 1.6456 38 1 4.3939 2.3513 2.2416 39 1 6.1679 1.7016 0.5482 40 1 6.2378 3.4452 -0.0486 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606863234.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:10:43 Heat of formation + Delta-G solvation = -170.359663 kcal Electronic energy + Delta-G solvation = -23855.413120 eV Core-core repulsion = 20249.495326 eV Total energy + Delta-G solvation = -3605.917794 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.42064 -40.87761 -38.84576 -37.72411 -37.12817 -36.67582 -33.77690 -32.35625 -31.79031 -27.49420 -27.06760 -26.31317 -24.33114 -23.26419 -22.95557 -21.74629 -20.50312 -19.23091 -18.34472 -17.72146 -17.47786 -17.32696 -17.01471 -16.90312 -16.35100 -16.18656 -15.71272 -15.65881 -15.12235 -14.70615 -14.34189 -14.20511 -13.95263 -13.52987 -13.29914 -13.04160 -12.91538 -12.74987 -12.58352 -12.49581 -12.41461 -12.27670 -12.14928 -12.08608 -11.92394 -11.68405 -11.25040 -10.98251 -10.77052 -10.58311 -10.26834 -9.51253 -8.26146 -5.99265 1.16563 1.45870 1.52345 1.59918 1.91867 2.04242 2.38560 2.69384 2.95445 3.09185 3.18107 3.93572 3.97563 4.07459 4.10271 4.11557 4.22154 4.31493 4.45741 4.48760 4.49802 4.54934 4.70726 4.72677 4.76089 4.83872 4.92951 5.00081 5.10872 5.23879 5.33723 5.35102 5.42836 5.54874 5.59407 5.98344 6.19196 6.45953 6.97983 7.17543 7.59796 8.02336 8.76250 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.012073 B = 0.006709 C = 0.005805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2318.654688 B = 4172.235161 C = 4822.574610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.408 6.408 3 C 0.080 3.920 4 C -0.058 4.058 5 C -0.142 4.142 6 C 0.493 3.507 7 O -0.635 6.635 8 N -0.438 5.438 9 C -0.340 4.340 10 H 0.108 0.892 11 C 0.006 3.994 12 N -0.889 5.889 13 Si 0.971 3.029 14 H -0.262 1.262 15 H -0.293 1.293 16 H -0.261 1.261 17 C 0.130 3.870 18 C -0.115 4.115 19 C 0.494 3.506 20 O -0.550 6.550 21 O -0.507 6.507 22 C -0.147 4.147 23 C -0.137 4.137 24 H 0.109 0.891 25 H 0.052 0.948 26 H 0.028 0.972 27 H 0.051 0.949 28 H 0.011 0.989 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.268 0.732 32 H 0.095 0.905 33 H 0.030 0.970 34 H 0.101 0.899 35 H 0.119 0.881 36 H 0.427 0.573 37 H 0.085 0.915 38 H 0.122 0.878 39 H 0.123 0.877 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.578 0.599 4.809 6.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.327 6.327 3 C 0.003 3.997 4 C -0.096 4.096 5 C -0.145 4.145 6 C 0.284 3.716 7 O -0.523 6.523 8 N -0.155 5.155 9 C -0.467 4.467 10 H 0.126 0.874 11 C -0.198 4.198 12 N -0.525 5.525 13 Si 0.795 3.205 14 H -0.186 1.186 15 H -0.219 1.219 16 H -0.186 1.186 17 C 0.005 3.995 18 C -0.154 4.154 19 C 0.338 3.662 20 O -0.441 6.441 21 O -0.320 6.320 22 C -0.184 4.184 23 C -0.174 4.174 24 H 0.127 0.873 25 H 0.071 0.929 26 H 0.046 0.954 27 H 0.070 0.930 28 H 0.030 0.970 29 H 0.089 0.911 30 H 0.111 0.889 31 H 0.078 0.922 32 H 0.113 0.887 33 H 0.048 0.952 34 H 0.119 0.881 35 H 0.137 0.863 36 H 0.288 0.712 37 H 0.104 0.896 38 H 0.140 0.860 39 H 0.141 0.859 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.177 0.510 4.948 6.495 hybrid contribution -0.625 0.405 -1.418 1.601 sum 3.552 0.915 3.530 5.091 Atomic orbital electron populations 1.22898 0.79968 1.03995 1.00022 1.87768 1.21219 1.28301 1.95455 1.22288 0.95090 0.83732 0.98584 1.20772 0.91728 0.93403 1.03664 1.20920 1.00764 0.95324 0.97508 1.20148 0.81159 0.86563 0.83767 1.90493 1.47292 1.35974 1.78589 1.43561 1.44011 1.24303 1.03594 1.19692 1.07747 1.12608 1.06689 0.87405 1.26142 0.97109 0.97145 0.99411 1.70066 1.18777 1.42654 1.21038 0.85324 0.78796 0.79090 0.77340 1.18631 1.21900 1.18579 1.20955 0.93258 0.88382 0.96868 1.21605 1.01838 0.93745 0.98219 1.23396 0.82554 0.80866 0.79384 1.90702 1.23350 1.76772 1.53283 1.84504 1.52580 1.31601 1.63324 1.23092 1.01805 1.02158 0.91341 1.23036 0.89203 1.04085 1.01099 0.87266 0.92947 0.95360 0.93048 0.97035 0.91143 0.88864 0.92192 0.88713 0.95155 0.88103 0.86345 0.71172 0.89646 0.86020 0.85862 0.89116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 11.01 113.37 1.25 2.05 16 2 O -0.41 -15.24 10.70 -148.98 -1.59 -16.83 16 3 C 0.08 3.16 5.58 71.98 0.40 3.57 16 4 C -0.06 -2.17 5.33 30.59 0.16 -2.01 16 5 C -0.14 -5.38 1.05 -52.92 -0.06 -5.43 16 6 C 0.49 23.26 5.92 87.66 0.52 23.78 16 7 O -0.64 -33.33 16.36 -3.07 -0.05 -33.38 16 8 N -0.44 -21.20 2.53 -635.55 -1.61 -22.81 16 9 C -0.34 -15.96 7.20 84.04 0.61 -15.36 16 10 H 0.11 4.71 6.64 -2.91 -0.02 4.69 16 11 C 0.01 0.26 4.93 84.92 0.42 0.68 16 12 N -0.89 -47.05 11.43 21.66 0.25 -46.80 16 13 Si 0.97 38.00 29.61 68.60 2.03 40.03 16 14 H -0.26 -9.81 7.11 99.48 0.71 -9.11 16 15 H -0.29 -11.82 7.11 99.48 0.71 -11.12 16 16 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 17 C 0.13 6.34 4.23 86.38 0.37 6.70 16 18 C -0.12 -4.53 6.13 29.85 0.18 -4.34 16 19 C 0.49 17.97 8.33 71.23 0.59 18.56 16 20 O -0.55 -23.87 16.74 21.97 0.37 -23.51 16 21 O -0.51 -13.41 13.42 -51.39 -0.69 -14.10 16 22 C -0.15 -4.47 9.74 30.62 0.30 -4.17 16 23 C -0.14 -4.10 9.01 30.62 0.28 -3.82 16 24 H 0.11 2.53 8.14 -2.39 -0.02 2.51 16 25 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 26 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.01 0.54 7.61 -2.39 -0.02 0.52 16 29 H 0.07 3.02 6.81 -2.39 -0.02 3.00 16 30 H 0.09 2.88 8.09 -2.38 -0.02 2.86 16 31 H 0.27 13.71 8.31 -92.70 -0.77 12.94 16 32 H 0.10 5.06 5.42 -2.39 -0.01 5.05 16 33 H 0.03 1.62 7.50 -2.39 -0.02 1.61 16 34 H 0.10 3.89 8.14 -2.39 -0.02 3.87 16 35 H 0.12 4.30 8.14 -2.39 -0.02 4.28 16 36 H 0.43 6.95 9.10 -74.06 -0.67 6.27 16 37 H 0.08 2.80 8.00 -2.39 -0.02 2.79 16 38 H 0.12 2.98 8.14 -2.39 -0.02 2.96 16 39 H 0.12 3.00 8.14 -2.39 -0.02 2.98 16 40 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 Total: -1.00 -67.35 341.33 4.10 -63.26 By element: Atomic # 1 Polarization: 33.56 SS G_CDS: 0.38 Total: 33.93 kcal Atomic # 6 Polarization: 15.20 SS G_CDS: 5.02 Total: 20.21 kcal Atomic # 7 Polarization: -68.26 SS G_CDS: -1.36 Total: -69.62 kcal Atomic # 8 Polarization: -85.85 SS G_CDS: -1.97 Total: -87.82 kcal Atomic # 14 Polarization: 38.00 SS G_CDS: 2.03 Total: 40.03 kcal Total: -67.35 4.10 -63.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606863234.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.103 kcal (2) G-P(sol) polarization free energy of solvation -67.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds