Wall clock time and date at job start Tue Mar 31 2020 05:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99948 * 2 1 4 4 H 1.48501 * 109.47127 * 269.99604 * 3 2 1 5 5 H 1.48498 * 109.47366 * 30.00087 * 3 2 1 6 6 H 1.48501 * 109.47120 * 149.99938 * 3 2 1 7 7 C 1.37877 * 119.99990 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99781 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00109 * 180.02562 * 7 2 1 10 10 C 1.52995 * 109.47003 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47310 * 180.02562 * 10 9 7 12 12 C 1.52991 * 109.47647 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.47340 * 179.97438 * 12 11 10 14 14 O 1.21275 * 119.99907 * 0.02562 * 13 12 11 15 15 N 1.34777 * 120.00021 * 180.02562 * 13 12 11 16 16 C 1.47156 * 120.98168 * 354.01447 * 15 13 12 17 17 C 1.53710 * 108.16170 * 129.43402 * 16 15 13 18 18 O 1.42964 * 109.14490 * 52.53963 * 17 16 15 19 19 C 1.42961 * 114.16706 * 297.28882 * 18 17 16 20 20 C 1.47154 * 120.98296 * 174.30353 * 15 13 12 21 21 H 1.08992 * 109.68375 * 110.78284 * 20 15 13 22 22 C 1.50697 * 109.67735 * 350.26657 * 20 15 13 23 23 O 1.20826 * 120.00167 * 297.46842 * 22 20 15 24 24 O 1.34228 * 119.99928 * 117.47519 * 22 20 15 25 25 H 0.96999 * 119.99952 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.46951 * 59.99845 * 9 7 2 27 27 H 1.08992 * 109.46816 * 300.00159 * 9 7 2 28 28 H 1.09002 * 109.47148 * 60.00266 * 10 9 7 29 29 H 1.09008 * 109.47343 * 299.99950 * 10 9 7 30 30 H 1.09002 * 109.46820 * 60.00037 * 11 10 9 31 31 H 1.08999 * 109.46908 * 300.00828 * 11 10 9 32 32 H 1.09007 * 109.47178 * 59.99628 * 12 11 10 33 33 H 1.09001 * 109.47079 * 300.00390 * 12 11 10 34 34 H 1.09007 * 109.68180 * 249.21788 * 16 15 13 35 35 H 1.08999 * 109.67998 * 9.76512 * 16 15 13 36 36 H 1.08996 * 109.65808 * 292.57132 * 17 16 15 37 37 H 1.08999 * 109.48758 * 172.39692 * 17 16 15 38 38 H 1.09002 * 109.51020 * 302.65436 * 19 18 17 39 39 H 1.08998 * 109.55319 * 182.53182 * 19 18 17 40 40 H 0.96697 * 116.99986 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0001 11 6 5.5515 -2.6367 0.0012 12 6 6.0615 -4.0791 0.0004 13 6 7.5685 -4.0791 0.0010 14 8 8.1748 -3.0288 0.0024 15 7 8.2423 -5.2463 -0.0001 16 6 7.5344 -6.5298 0.1298 17 6 8.0115 -7.4566 -0.9999 18 8 9.4398 -7.5157 -0.9862 19 6 10.0799 -6.2622 -1.2367 20 6 9.7083 -5.2746 -0.1248 21 1 10.1507 -5.5987 0.8171 22 6 10.2143 -3.8993 -0.4764 23 8 9.8838 -3.3817 -1.5169 24 8 11.0322 -3.2494 0.3664 25 1 -0.4850 0.8400 -0.0004 26 1 3.8745 -0.6808 0.8905 27 1 3.8751 -0.6797 -0.8894 28 1 3.6585 -3.1502 -0.8904 29 1 3.6578 -3.1506 0.8897 30 1 5.9141 -2.1232 0.8917 31 1 5.9155 -2.1224 -0.8883 32 1 5.6988 -4.5922 -0.8903 33 1 5.6974 -4.5937 0.8896 34 1 7.7616 -6.9783 1.0970 35 1 6.4601 -6.3669 0.0435 36 1 7.6723 -7.0685 -1.9604 37 1 7.6043 -8.4560 -0.8468 38 1 9.7484 -5.8698 -2.1980 39 1 11.1608 -6.4015 -1.2536 40 1 11.3309 -2.3699 0.0974 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608180004.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:41 Heat of formation + Delta-G solvation = -174.177043 kcal Electronic energy + Delta-G solvation = -23029.090842 eV Core-core repulsion = 19423.007514 eV Total energy + Delta-G solvation = -3606.083328 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.46672 -39.46274 -38.78865 -36.15879 -35.26712 -35.11052 -32.81735 -32.22372 -30.24859 -28.53968 -26.14242 -25.51470 -23.00963 -22.74536 -21.20994 -20.08081 -19.31443 -18.44139 -17.56005 -17.26979 -16.70130 -16.60116 -16.18471 -15.97198 -15.48999 -15.22584 -14.92973 -14.36523 -14.26300 -14.01809 -13.55019 -13.28975 -12.74299 -12.58236 -12.46045 -12.12383 -11.97310 -11.78123 -11.55809 -11.53973 -11.15534 -10.86737 -10.76360 -10.58302 -10.51265 -9.99980 -9.85017 -9.67563 -9.48005 -9.13893 -9.08697 -8.50455 -6.01776 -3.99359 1.82718 2.36996 2.59752 2.67041 3.33237 3.34757 3.41691 3.47624 4.02040 4.30345 4.42740 4.49162 4.51229 4.61198 4.69367 4.92075 5.01225 5.07634 5.12048 5.16780 5.20331 5.32907 5.33369 5.63696 5.80679 5.96076 6.08096 6.35521 6.42760 6.47920 6.63347 6.75290 6.87544 6.96643 7.35648 7.48487 7.74881 7.83251 7.89882 8.56672 9.02880 9.61635 11.11694 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.025408 B = 0.003405 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.750574 B = 8221.171636 C = 9074.096027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.065 3.935 3 Si 0.879 3.121 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.520 4.520 8 H 0.071 0.929 9 C -0.015 4.015 10 C -0.102 4.102 11 C -0.107 4.107 12 C -0.132 4.132 13 C 0.516 3.484 14 O -0.510 6.510 15 N -0.617 5.617 16 C 0.076 3.924 17 C 0.041 3.959 18 O -0.369 6.369 19 C 0.062 3.938 20 C 0.119 3.881 21 H 0.109 0.891 22 C 0.498 3.502 23 O -0.500 6.500 24 O -0.515 6.515 25 H 0.262 0.738 26 H 0.015 0.985 27 H 0.011 0.989 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.108 0.892 36 H 0.064 0.936 37 H 0.114 0.886 38 H 0.073 0.927 39 H 0.114 0.886 40 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.188 -17.201 0.158 28.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.136 4.136 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.190 1.190 7 C -0.558 4.558 8 H 0.089 0.911 9 C -0.053 4.053 10 C -0.139 4.139 11 C -0.145 4.145 12 C -0.171 4.171 13 C 0.306 3.694 14 O -0.385 6.385 15 N -0.357 5.357 16 C -0.047 4.047 17 C -0.036 4.036 18 O -0.287 6.287 19 C -0.016 4.016 20 C 0.014 3.986 21 H 0.127 0.873 22 C 0.340 3.660 23 O -0.387 6.387 24 O -0.327 6.327 25 H 0.072 0.928 26 H 0.034 0.966 27 H 0.030 0.970 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.103 0.897 35 H 0.126 0.874 36 H 0.082 0.918 37 H 0.132 0.868 38 H 0.091 0.909 39 H 0.132 0.868 40 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 22.222 -16.900 0.021 27.918 hybrid contribution 0.329 1.689 -0.140 1.727 sum 22.551 -15.211 -0.119 27.202 Atomic orbital electron populations 1.69919 1.06298 1.26849 1.51425 1.25037 0.94732 0.99218 0.94582 0.86777 0.80405 0.83564 0.78570 1.20291 1.21419 1.18955 1.21173 0.89611 0.94393 1.50596 0.91088 1.19571 0.96953 0.92408 0.96340 1.21472 0.91415 1.00070 1.00966 1.21518 0.97436 0.92503 1.03052 1.21789 0.88867 1.02208 1.04283 1.21339 0.91468 0.82253 0.74309 1.90673 1.68603 1.30746 1.48481 1.48300 1.04390 1.07448 1.75552 1.22659 0.98624 0.83000 1.00385 1.23199 0.81206 1.01151 0.98074 1.88014 1.19077 1.29141 1.92447 1.22866 0.99154 0.83560 0.96042 1.21313 0.82989 0.91609 1.02685 0.87291 1.22117 0.75436 0.86834 0.81657 1.90732 1.54349 1.66955 1.26693 1.84394 1.61527 1.35742 1.51024 0.92794 0.96632 0.97042 0.92792 0.92769 0.91735 0.91654 0.88606 0.88618 0.89673 0.87390 0.91791 0.86792 0.90911 0.86826 0.72714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.38 13.96 55.43 0.77 -27.61 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 22.46 27.47 -169.99 -4.67 17.79 16 4 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 6 H -0.26 -6.58 6.54 56.52 0.37 -6.21 16 7 C -0.52 -15.11 9.66 -34.44 -0.33 -15.44 16 8 H 0.07 2.18 7.99 -52.48 -0.42 1.77 16 9 C -0.02 -0.38 4.04 -27.89 -0.11 -0.49 16 10 C -0.10 -1.98 5.15 -26.73 -0.14 -2.12 16 11 C -0.11 -1.80 4.50 -26.73 -0.12 -1.92 16 12 C -0.13 -1.64 4.07 -27.89 -0.11 -1.76 16 13 C 0.52 7.11 7.39 -10.99 -0.08 7.03 16 14 O -0.51 -9.00 12.11 -21.30 -0.26 -9.26 16 15 N -0.62 -6.42 3.01 -165.80 -0.50 -6.92 16 16 C 0.08 0.49 6.58 -3.32 -0.02 0.47 16 17 C 0.04 0.24 7.00 37.53 0.26 0.51 16 18 O -0.37 -2.92 10.74 -35.23 -0.38 -3.29 16 19 C 0.06 0.50 6.24 37.31 0.23 0.73 16 20 C 0.12 1.17 3.53 -68.58 -0.24 0.93 16 21 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 22 C 0.50 6.29 4.75 36.00 0.17 6.46 16 23 O -0.50 -8.10 15.69 -26.68 -0.42 -8.52 16 24 O -0.51 -5.47 13.42 -41.95 -0.56 -6.03 16 25 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 26 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 27 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 28 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.05 1.02 8.14 -51.92 -0.42 0.59 16 30 H 0.06 1.14 8.10 -51.93 -0.42 0.72 16 31 H 0.06 1.19 8.10 -51.93 -0.42 0.77 16 32 H 0.10 1.02 7.90 -51.93 -0.41 0.61 16 33 H 0.10 0.97 7.78 -51.93 -0.40 0.57 16 34 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.11 0.55 6.04 -51.93 -0.31 0.24 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.11 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.07 0.67 7.86 -51.93 -0.41 0.27 16 39 H 0.11 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.41 3.02 9.10 45.56 0.41 3.44 16 LS Contribution 328.50 15.07 4.95 4.95 Total: -1.00 -37.82 328.50 -6.93 -44.75 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: -5.27 Total: -2.10 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: -0.59 Total: -3.76 kcal Atomic # 7 Polarization: -34.80 SS G_CDS: 0.27 Total: -34.53 kcal Atomic # 8 Polarization: -25.49 SS G_CDS: -1.62 Total: -27.10 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -4.67 Total: 17.79 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -37.82 -6.93 -44.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608180004.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.427 kcal (2) G-P(sol) polarization free energy of solvation -37.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds