Wall clock time and date at job start Tue Mar 31 2020 05:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 119.99948 * 2 1 4 4 H 1.48501 * 109.47127 * 269.99604 * 3 2 1 5 5 H 1.48498 * 109.47366 * 30.00087 * 3 2 1 6 6 H 1.48501 * 109.47120 * 149.99938 * 3 2 1 7 7 C 1.37877 * 119.99990 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99781 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00109 * 180.02562 * 7 2 1 10 10 C 1.52995 * 109.47003 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47310 * 180.02562 * 10 9 7 12 12 C 1.52991 * 109.47647 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.47340 * 179.97438 * 12 11 10 14 14 O 1.21275 * 119.99907 * 0.02562 * 13 12 11 15 15 N 1.34777 * 120.00021 * 180.02562 * 13 12 11 16 16 C 1.47156 * 120.98168 * 354.01447 * 15 13 12 17 17 C 1.53710 * 108.16170 * 129.43402 * 16 15 13 18 18 O 1.42964 * 109.14490 * 52.53963 * 17 16 15 19 19 C 1.42961 * 114.16706 * 297.28882 * 18 17 16 20 20 C 1.47154 * 120.98296 * 174.30353 * 15 13 12 21 21 H 1.08992 * 109.68375 * 110.78284 * 20 15 13 22 22 C 1.50697 * 109.67735 * 350.26657 * 20 15 13 23 23 O 1.20826 * 120.00167 * 297.46842 * 22 20 15 24 24 O 1.34228 * 119.99928 * 117.47519 * 22 20 15 25 25 H 0.96999 * 119.99952 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.46951 * 59.99845 * 9 7 2 27 27 H 1.08992 * 109.46816 * 300.00159 * 9 7 2 28 28 H 1.09002 * 109.47148 * 60.00266 * 10 9 7 29 29 H 1.09008 * 109.47343 * 299.99950 * 10 9 7 30 30 H 1.09002 * 109.46820 * 60.00037 * 11 10 9 31 31 H 1.08999 * 109.46908 * 300.00828 * 11 10 9 32 32 H 1.09007 * 109.47178 * 59.99628 * 12 11 10 33 33 H 1.09001 * 109.47079 * 300.00390 * 12 11 10 34 34 H 1.09007 * 109.68180 * 249.21788 * 16 15 13 35 35 H 1.08999 * 109.67998 * 9.76512 * 16 15 13 36 36 H 1.08996 * 109.65808 * 292.57132 * 17 16 15 37 37 H 1.08999 * 109.48758 * 172.39692 * 17 16 15 38 38 H 1.09002 * 109.51020 * 302.65436 * 19 18 17 39 39 H 1.08998 * 109.55319 * 182.53182 * 19 18 17 40 40 H 0.96697 * 116.99986 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0001 11 6 5.5515 -2.6367 0.0012 12 6 6.0615 -4.0791 0.0004 13 6 7.5685 -4.0791 0.0010 14 8 8.1748 -3.0288 0.0024 15 7 8.2423 -5.2463 -0.0001 16 6 7.5344 -6.5298 0.1298 17 6 8.0115 -7.4566 -0.9999 18 8 9.4398 -7.5157 -0.9862 19 6 10.0799 -6.2622 -1.2367 20 6 9.7083 -5.2746 -0.1248 21 1 10.1507 -5.5987 0.8171 22 6 10.2143 -3.8993 -0.4764 23 8 9.8838 -3.3817 -1.5169 24 8 11.0322 -3.2494 0.3664 25 1 -0.4850 0.8400 -0.0004 26 1 3.8745 -0.6808 0.8905 27 1 3.8751 -0.6797 -0.8894 28 1 3.6585 -3.1502 -0.8904 29 1 3.6578 -3.1506 0.8897 30 1 5.9141 -2.1232 0.8917 31 1 5.9155 -2.1224 -0.8883 32 1 5.6988 -4.5922 -0.8903 33 1 5.6974 -4.5937 0.8896 34 1 7.7616 -6.9783 1.0970 35 1 6.4601 -6.3669 0.0435 36 1 7.6723 -7.0685 -1.9604 37 1 7.6043 -8.4560 -0.8468 38 1 9.7484 -5.8698 -2.1980 39 1 11.1608 -6.4015 -1.2536 40 1 11.3309 -2.3699 0.0974 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608180004.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:41 Heat of formation + Delta-G solvation = -201.898276 kcal Electronic energy + Delta-G solvation = -23030.292925 eV Core-core repulsion = 19423.007514 eV Total energy + Delta-G solvation = -3607.285411 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.32806 -40.37828 -39.56858 -37.11184 -36.72311 -36.02595 -34.67191 -33.15968 -31.77940 -29.39868 -27.58316 -26.34161 -24.26200 -23.57804 -22.42448 -21.69435 -20.17224 -19.36164 -18.88234 -18.41423 -18.03372 -17.49635 -17.00248 -16.74532 -16.37578 -16.27721 -16.08303 -15.85743 -15.35014 -15.08518 -14.70307 -14.53410 -14.09184 -13.83524 -13.73867 -13.47550 -13.21489 -12.90323 -12.57628 -12.50872 -12.35818 -12.14552 -12.13147 -11.77738 -11.63678 -11.51019 -11.38662 -11.32995 -11.27877 -10.82322 -10.77608 -9.83454 -8.31224 -6.34023 0.96899 1.33005 1.34210 1.39950 1.46806 1.79961 1.86346 2.34080 2.80005 3.04234 3.33214 3.56225 3.76483 3.90454 3.90972 4.05931 4.07002 4.18737 4.26069 4.42821 4.52235 4.53936 4.59015 4.68400 4.75654 4.83648 4.89278 5.08001 5.10167 5.18359 5.23368 5.56740 5.62575 5.62671 5.66705 5.91949 6.03525 6.27892 6.73806 6.84245 6.99148 7.30893 8.85290 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.025408 B = 0.003405 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.750574 B = 8221.171636 C = 9074.096027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.005 3.995 3 Si 0.945 3.055 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.254 1.254 7 C -0.529 4.529 8 H 0.040 0.960 9 C -0.017 4.017 10 C -0.092 4.092 11 C -0.097 4.097 12 C -0.124 4.124 13 C 0.509 3.491 14 O -0.559 6.559 15 N -0.613 5.613 16 C 0.069 3.931 17 C 0.038 3.962 18 O -0.375 6.375 19 C 0.069 3.931 20 C 0.116 3.884 21 H 0.130 0.870 22 C 0.497 3.503 23 O -0.544 6.544 24 O -0.513 6.513 25 H 0.266 0.734 26 H 0.013 0.987 27 H 0.009 0.991 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.052 0.948 31 H 0.044 0.956 32 H 0.118 0.882 33 H 0.127 0.873 34 H 0.105 0.895 35 H 0.125 0.875 36 H 0.058 0.942 37 H 0.144 0.856 38 H 0.056 0.944 39 H 0.135 0.865 40 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.560 -18.720 0.752 30.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.191 4.191 3 Si 0.769 3.231 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.178 1.178 7 C -0.567 4.567 8 H 0.058 0.942 9 C -0.055 4.055 10 C -0.129 4.129 11 C -0.135 4.135 12 C -0.163 4.163 13 C 0.300 3.700 14 O -0.438 6.438 15 N -0.350 5.350 16 C -0.051 4.051 17 C -0.039 4.039 18 O -0.292 6.292 19 C -0.009 4.009 20 C 0.011 3.989 21 H 0.147 0.853 22 C 0.340 3.660 23 O -0.434 6.434 24 O -0.326 6.326 25 H 0.075 0.925 26 H 0.031 0.969 27 H 0.027 0.973 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.136 0.864 33 H 0.145 0.855 34 H 0.123 0.877 35 H 0.143 0.857 36 H 0.076 0.924 37 H 0.162 0.838 38 H 0.074 0.926 39 H 0.153 0.847 40 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 23.613 -18.478 0.630 29.990 hybrid contribution -0.123 2.074 -0.309 2.100 sum 23.490 -16.404 0.321 28.653 Atomic orbital electron populations 1.70051 1.08038 1.28077 1.52852 1.25957 0.95592 1.03258 0.94330 0.85731 0.79373 0.78894 0.79102 1.19399 1.20574 1.17807 1.21532 0.91985 0.93294 1.49930 0.94181 1.19573 0.94028 0.95947 0.95934 1.21325 0.93232 0.96754 1.01635 1.21281 0.95203 0.95502 1.01510 1.21705 0.88283 0.99460 1.06860 1.21513 0.91942 0.82530 0.74042 1.90654 1.69508 1.32663 1.50988 1.48372 1.04801 1.07912 1.73960 1.23024 0.99305 0.81160 1.01648 1.23406 0.80257 1.02638 0.97624 1.88020 1.20211 1.28693 1.92307 1.22843 1.00455 0.83190 0.94419 1.21574 0.82737 0.90315 1.04282 0.85274 1.22705 0.74680 0.87642 0.80954 1.90705 1.55896 1.68275 1.28488 1.84376 1.61030 1.36598 1.50573 0.92484 0.96854 0.97270 0.92305 0.91895 0.92955 0.93667 0.86366 0.85549 0.87659 0.85692 0.92374 0.83845 0.92614 0.84688 0.71403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.37 13.96 21.45 0.30 -60.07 16 2 C 0.01 0.33 5.47 84.65 0.46 0.79 16 3 Si 0.95 46.25 27.47 68.60 1.88 48.14 16 4 H -0.27 -12.73 7.11 99.48 0.71 -12.02 16 5 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 6 H -0.25 -11.89 6.54 99.48 0.65 -11.24 16 7 C -0.53 -31.11 9.66 25.60 0.25 -30.87 16 8 H 0.04 2.53 7.99 -2.91 -0.02 2.50 16 9 C -0.02 -0.85 4.04 29.85 0.12 -0.73 16 10 C -0.09 -3.48 5.15 30.59 0.16 -3.32 16 11 C -0.10 -3.16 4.50 30.59 0.14 -3.02 16 12 C -0.12 -2.78 4.07 29.84 0.12 -2.66 16 13 C 0.51 13.27 7.39 87.66 0.65 13.92 16 14 O -0.56 -19.68 12.11 22.67 0.27 -19.41 16 15 N -0.61 -11.35 3.01 -796.87 -2.40 -13.75 16 16 C 0.07 0.64 6.58 86.49 0.57 1.21 16 17 C 0.04 0.32 7.00 72.22 0.51 0.83 16 18 O -0.37 -4.86 10.74 -148.98 -1.60 -6.46 16 19 C 0.07 0.98 6.24 72.08 0.45 1.43 16 20 C 0.12 2.07 3.53 44.22 0.16 2.23 16 21 H 0.13 1.79 8.14 -2.39 -0.02 1.77 16 22 C 0.50 12.34 4.75 71.24 0.34 12.68 16 23 O -0.54 -17.92 15.69 29.55 0.46 -17.45 16 24 O -0.51 -10.61 13.42 -48.81 -0.66 -11.27 16 25 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 26 H 0.01 0.65 7.20 -2.39 -0.02 0.63 16 27 H 0.01 0.44 7.57 -2.39 -0.02 0.42 16 28 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 30 H 0.05 1.82 8.10 -2.39 -0.02 1.80 16 31 H 0.04 1.64 8.10 -2.39 -0.02 1.62 16 32 H 0.12 2.14 7.90 -2.38 -0.02 2.12 16 33 H 0.13 2.07 7.78 -2.39 -0.02 2.05 16 34 H 0.11 0.63 8.14 -2.38 -0.02 0.61 16 35 H 0.13 0.75 6.04 -2.39 -0.01 0.73 16 36 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.14 0.40 8.14 -2.39 -0.02 0.38 16 38 H 0.06 0.99 7.86 -2.39 -0.02 0.97 16 39 H 0.14 1.27 8.14 -2.39 -0.02 1.26 16 40 H 0.42 6.20 9.10 -74.06 -0.67 5.53 16 Total: -1.00 -83.73 328.50 2.50 -81.23 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: 0.32 Total: 6.54 kcal Atomic # 6 Polarization: -11.42 SS G_CDS: 3.92 Total: -7.51 kcal Atomic # 7 Polarization: -71.72 SS G_CDS: -2.10 Total: -73.82 kcal Atomic # 8 Polarization: -53.07 SS G_CDS: -1.52 Total: -54.59 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 1.88 Total: 48.14 kcal Total: -83.73 2.50 -81.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608180004.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.665 kcal (2) G-P(sol) polarization free energy of solvation -83.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds