Wall clock time and date at job start Tue Mar 31 2020 05:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86805 * 119.99959 * 2 1 4 4 H 1.48498 * 109.46727 * 269.99625 * 3 2 1 5 5 H 1.48495 * 109.46979 * 29.99954 * 3 2 1 6 6 H 1.48497 * 109.46827 * 149.99818 * 3 2 1 7 7 C 1.37879 * 120.00159 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00252 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99694 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47024 * 179.97438 * 9 7 2 11 11 C 1.52995 * 109.47257 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.47020 * 180.02562 * 11 10 9 13 13 C 1.50711 * 109.47053 * 180.02562 * 12 11 10 14 14 O 1.21282 * 119.99770 * 0.02562 * 13 12 11 15 15 N 1.34772 * 119.99915 * 179.97438 * 13 12 11 16 16 C 1.47166 * 120.94617 * 6.01578 * 15 13 12 17 17 C 1.53295 * 108.38092 * 230.47412 * 16 15 13 18 18 O 1.42961 * 109.25940 * 307.77609 * 17 16 15 19 19 C 1.42962 * 114.17087 * 62.55477 * 18 17 16 20 20 C 1.47153 * 120.97911 * 186.03603 * 15 13 12 21 21 H 1.09001 * 109.68408 * 249.19999 * 20 15 13 22 22 C 1.50697 * 109.68596 * 9.75853 * 20 15 13 23 23 O 1.20826 * 120.00015 * 57.40529 * 22 20 15 24 24 O 1.34222 * 120.00025 * 237.41680 * 22 20 15 25 25 H 0.97002 * 120.00346 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.46812 * 60.00843 * 9 7 2 27 27 H 1.08993 * 109.47432 * 300.00624 * 9 7 2 28 28 H 1.09005 * 109.47076 * 60.00135 * 10 9 7 29 29 H 1.09001 * 109.47321 * 300.00779 * 10 9 7 30 30 H 1.09003 * 109.47400 * 60.00419 * 11 10 9 31 31 H 1.09001 * 109.47353 * 300.00467 * 11 10 9 32 32 H 1.08998 * 109.47634 * 60.00399 * 12 11 10 33 33 H 1.08996 * 109.47334 * 299.99542 * 12 11 10 34 34 H 1.08999 * 109.64503 * 110.77271 * 16 15 13 35 35 H 1.09003 * 109.73000 * 350.22035 * 16 15 13 36 36 H 1.08999 * 109.51553 * 187.82368 * 17 16 15 37 37 H 1.08998 * 109.51122 * 67.72200 * 17 16 15 38 38 H 1.08999 * 109.51182 * 57.34184 * 19 18 17 39 39 H 1.09000 * 109.51573 * 177.44012 * 19 18 17 40 40 H 0.96700 * 117.00092 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0017 10 6 2.2452 -3.6621 0.0015 11 6 1.4802 -4.9871 0.0020 12 6 2.4745 -6.1499 0.0024 13 6 1.7209 -7.4552 0.0023 14 8 0.5081 -7.4551 0.0015 15 7 2.3948 -8.6223 0.0021 16 6 3.8603 -8.6500 0.1342 17 6 4.4304 -9.5246 -0.9883 18 8 3.7673 -10.7911 -0.9823 19 6 2.3632 -10.7180 -1.2411 20 6 1.6871 -9.9056 -0.1307 21 1 1.7410 -10.4536 0.8099 22 6 0.2454 -9.6553 -0.4912 23 8 -0.0282 -9.0262 -1.4858 24 8 -0.7347 -10.1309 0.2929 25 1 -0.4851 0.8400 -0.0004 26 1 0.6240 -2.5575 -0.8881 27 1 0.6246 -2.5563 0.8918 28 1 2.8725 -3.6039 0.8910 29 1 2.8712 -3.6047 -0.8890 30 1 0.8532 -5.0450 -0.8878 31 1 0.8538 -5.0447 0.8922 32 1 3.1012 -6.0920 0.8923 33 1 3.1010 -6.0926 -0.8876 34 1 4.1331 -9.0709 1.1020 35 1 4.2567 -7.6383 0.0485 36 1 5.4985 -9.6720 -0.8283 37 1 4.2704 -9.0344 -1.9486 38 1 2.1949 -10.2318 -2.2020 39 1 1.9443 -11.7240 -1.2638 40 1 -1.6438 -9.9446 0.0210 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608180005.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:45 Heat of formation + Delta-G solvation = -175.640533 kcal Electronic energy + Delta-G solvation = -22972.444386 eV Core-core repulsion = 19366.297596 eV Total energy + Delta-G solvation = -3606.146790 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.41578 -39.40621 -38.72400 -36.10541 -35.18685 -34.96068 -32.82715 -32.20778 -29.89694 -28.41357 -25.92790 -25.38901 -23.01267 -22.79977 -21.30598 -20.03279 -19.25666 -18.38798 -17.49684 -17.21355 -16.64351 -16.23011 -16.06175 -15.90468 -15.43302 -15.21317 -14.84549 -14.46065 -14.27397 -13.96783 -13.42343 -13.24627 -12.66680 -12.55229 -12.27503 -11.95808 -11.73131 -11.63261 -11.48339 -11.46043 -10.99864 -10.81500 -10.57042 -10.51419 -10.46137 -10.42759 -9.79522 -9.63294 -9.24716 -9.02602 -8.99207 -8.30947 -5.95468 -3.98229 1.89686 2.44832 2.64345 2.72574 3.33787 3.36353 3.39759 3.42770 4.07190 4.36091 4.46078 4.48828 4.57325 4.65342 4.74373 4.95844 5.05689 5.13998 5.16753 5.24905 5.26610 5.36768 5.39864 5.73369 5.88658 6.08963 6.25164 6.45952 6.50470 6.52117 6.80580 6.91023 7.01354 7.18735 7.73381 7.81141 7.89044 7.99589 8.05672 8.47052 9.09408 9.65448 11.15868 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.027289 B = 0.003144 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.825757 B = 8903.292246 C = 9690.053990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.109 4.109 11 C -0.104 4.104 12 C -0.132 4.132 13 C 0.515 3.485 14 O -0.508 6.508 15 N -0.619 5.619 16 C 0.076 3.924 17 C 0.041 3.959 18 O -0.369 6.369 19 C 0.062 3.938 20 C 0.120 3.880 21 H 0.109 0.891 22 C 0.495 3.505 23 O -0.494 6.494 24 O -0.516 6.516 25 H 0.260 0.740 26 H 0.016 0.984 27 H 0.016 0.984 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.107 0.893 36 H 0.114 0.886 37 H 0.063 0.937 38 H 0.072 0.928 39 H 0.114 0.886 40 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.192 -25.091 0.011 26.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.559 4.559 8 H 0.073 0.927 9 C -0.017 4.017 10 C -0.147 4.147 11 C -0.142 4.142 12 C -0.171 4.171 13 C 0.305 3.695 14 O -0.382 6.382 15 N -0.358 5.358 16 C -0.046 4.046 17 C -0.036 4.036 18 O -0.287 6.287 19 C -0.016 4.016 20 C 0.015 3.985 21 H 0.127 0.873 22 C 0.336 3.664 23 O -0.380 6.380 24 O -0.328 6.328 25 H 0.070 0.930 26 H 0.034 0.966 27 H 0.034 0.966 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.112 0.888 33 H 0.112 0.888 34 H 0.102 0.898 35 H 0.126 0.874 36 H 0.132 0.868 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.132 0.868 40 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 7.782 -25.020 -0.113 26.203 hybrid contribution -0.262 1.344 -0.134 1.376 sum 7.520 -23.676 -0.247 24.843 Atomic orbital electron populations 1.69972 1.06069 1.26531 1.50864 1.25045 0.94838 0.99249 0.95440 0.86605 0.79814 0.83576 0.78057 1.20698 1.21253 1.19906 1.21274 0.92966 0.91173 1.50495 0.92742 1.19094 0.94050 0.91252 0.97334 1.21644 0.99089 0.93877 1.00079 1.21484 0.96997 0.92617 1.03097 1.21807 1.00140 0.91195 1.03981 1.21332 0.88402 0.85296 0.74459 1.90709 1.14155 1.85396 1.47942 1.48274 1.07655 1.04154 1.75766 1.22550 0.78624 1.03096 1.00332 1.23120 0.97813 0.84520 0.98191 1.88013 1.19318 1.29015 1.92345 1.22866 0.81821 1.00972 0.95955 1.21278 0.87335 0.87331 1.02578 0.87291 1.22143 0.87656 0.75444 0.81144 1.90748 1.83905 1.35189 1.28129 1.84392 1.19952 1.73725 1.54781 0.93027 0.96587 0.96594 0.93424 0.93427 0.91651 0.91784 0.88849 0.88842 0.89792 0.87440 0.86829 0.91854 0.91024 0.86792 0.72665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.68 13.29 55.43 0.74 -26.95 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.52 -15.06 9.11 -34.44 -0.31 -15.37 16 8 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16 9 C 0.02 0.53 4.97 -27.88 -0.14 0.39 16 10 C -0.11 -2.25 5.15 -26.73 -0.14 -2.39 16 11 C -0.10 -1.89 4.50 -26.73 -0.12 -2.01 16 12 C -0.13 -1.75 4.07 -27.88 -0.11 -1.87 16 13 C 0.51 7.50 7.33 -10.98 -0.08 7.42 16 14 O -0.51 -9.45 11.92 -19.61 -0.23 -9.68 16 15 N -0.62 -6.77 3.02 -166.04 -0.50 -7.27 16 16 C 0.08 0.52 6.55 -3.53 -0.02 0.50 16 17 C 0.04 0.25 6.98 37.31 0.26 0.51 16 18 O -0.37 -3.01 10.74 -35.23 -0.38 -3.39 16 19 C 0.06 0.51 6.26 37.31 0.23 0.74 16 20 C 0.12 1.23 3.53 -68.57 -0.24 0.99 16 21 H 0.11 0.94 8.14 -51.93 -0.42 0.52 16 22 C 0.50 6.48 4.98 36.00 0.18 6.65 16 23 O -0.49 -8.31 15.38 -26.88 -0.41 -8.73 16 24 O -0.52 -5.61 13.42 -39.82 -0.53 -6.15 16 25 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.06 1.30 8.10 -51.93 -0.42 0.88 16 31 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 32 H 0.09 1.02 7.78 -51.93 -0.40 0.62 16 33 H 0.09 1.07 7.90 -51.93 -0.41 0.66 16 34 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.11 0.60 6.04 -51.93 -0.31 0.29 16 36 H 0.11 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.68 7.95 -51.93 -0.41 0.26 16 39 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.41 3.13 9.10 45.56 0.41 3.55 16 LS Contribution 331.82 15.07 5.00 5.00 Total: -1.00 -37.72 331.82 -7.25 -44.98 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: -5.31 Total: -1.85 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: -0.59 Total: -2.90 kcal Atomic # 7 Polarization: -34.45 SS G_CDS: 0.23 Total: -34.21 kcal Atomic # 8 Polarization: -26.38 SS G_CDS: -1.56 Total: -27.94 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -37.72 -7.25 -44.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608180005.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.666 kcal (2) G-P(sol) polarization free energy of solvation -37.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds