Wall clock time and date at job start Tue Mar 31 2020 05:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86794 * 119.99774 * 2 1 4 4 H 1.48500 * 109.47092 * 239.99609 * 3 2 1 5 5 H 1.48500 * 109.47415 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47070 * 119.99929 * 3 2 1 7 7 C 1.37874 * 119.99815 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99837 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00272 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47155 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47165 * 180.02562 * 10 9 7 12 12 C 1.52993 * 109.46989 * 179.97438 * 11 10 9 13 13 C 1.50705 * 109.47236 * 179.97438 * 12 11 10 14 14 O 1.21287 * 119.99610 * 0.02562 * 13 12 11 15 15 N 1.34770 * 120.00357 * 179.97438 * 13 12 11 16 16 C 1.46500 * 120.00310 * 180.02562 * 15 13 12 17 17 C 1.50706 * 110.45410 * 300.70486 * 16 15 13 18 18 O 1.20825 * 119.99859 * 216.14361 * 17 16 15 19 19 O 1.34224 * 120.00295 * 36.15319 * 17 16 15 20 20 C 1.54507 * 110.62861 * 178.01850 * 16 15 13 21 21 C 1.54481 * 104.06114 * 241.29514 * 20 16 15 22 22 O 1.44423 * 104.80287 * 23.98327 * 21 20 16 23 23 C 1.44420 * 105.27345 * 319.48509 * 22 21 20 24 24 H 0.96999 * 120.00077 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47276 * 60.00320 * 9 7 2 26 26 H 1.08995 * 109.47544 * 300.00055 * 9 7 2 27 27 H 1.09002 * 109.47339 * 60.00184 * 10 9 7 28 28 H 1.09005 * 109.47099 * 299.99652 * 10 9 7 29 29 H 1.09002 * 109.47087 * 59.99729 * 11 10 9 30 30 H 1.09005 * 109.46897 * 300.00113 * 11 10 9 31 31 H 1.09002 * 109.47416 * 59.99944 * 12 11 10 32 32 H 1.09005 * 109.47404 * 299.99816 * 12 11 10 33 33 H 0.97003 * 119.99759 * 0.02562 * 15 13 12 34 34 H 0.96700 * 117.00196 * 179.97438 * 19 17 16 35 35 H 1.08995 * 110.51352 * 359.94525 * 20 16 15 36 36 H 1.09001 * 110.50739 * 122.65800 * 20 16 15 37 37 H 1.08994 * 110.37617 * 265.14579 * 21 20 16 38 38 H 1.08998 * 110.46414 * 142.85894 * 21 20 16 39 39 H 1.09003 * 110.37288 * 281.67883 * 23 22 21 40 40 H 1.09006 * 110.46719 * 159.39266 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6621 0.0027 11 6 1.4804 -4.9871 0.0033 12 6 2.4746 -6.1500 0.0037 13 6 1.7212 -7.4551 0.0048 14 8 0.5083 -7.4551 0.0048 15 7 2.3950 -8.6223 0.0048 16 6 1.6626 -9.8911 0.0054 17 6 0.7753 -9.9864 1.2199 18 8 0.6140 -11.0510 1.7681 19 8 0.1641 -8.8888 1.6924 20 6 2.6420 -11.0850 -0.0447 21 6 2.2838 -11.8093 -1.3614 22 8 1.6669 -10.7953 -2.1842 23 6 0.8286 -10.0352 -1.2869 24 1 -0.4850 0.8400 -0.0004 25 1 0.6241 -2.5575 -0.8880 26 1 0.6248 -2.5564 0.8919 27 1 2.8720 -3.6036 0.8927 28 1 2.8720 -3.6051 -0.8874 29 1 0.8540 -5.0454 -0.8869 30 1 0.8534 -5.0443 0.8931 31 1 3.1013 -6.0919 0.8936 32 1 3.1013 -6.0926 -0.8864 33 1 3.3650 -8.6222 0.0045 34 1 -0.3953 -8.9996 2.4733 35 1 3.6730 -10.7324 -0.0709 36 1 2.4843 -11.7443 0.8089 37 1 1.5820 -12.6208 -1.1693 38 1 3.1836 -12.1926 -1.8424 39 1 -0.0964 -10.5746 -1.0834 40 1 0.6100 -9.0541 -1.7088 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608180237.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:14 Heat of formation + Delta-G solvation = -184.622322 kcal Electronic energy + Delta-G solvation = -22758.978698 eV Core-core repulsion = 19152.442428 eV Total energy + Delta-G solvation = -3606.536269 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.53809 -39.49832 -38.92982 -36.30984 -35.15674 -34.68234 -32.64989 -31.51358 -30.03993 -28.99275 -25.68211 -24.59375 -23.64340 -22.48197 -20.72926 -20.08305 -19.96351 -18.66664 -17.65955 -17.19427 -16.68291 -16.24234 -16.14145 -15.53191 -15.43858 -15.37154 -14.51064 -14.31594 -13.98197 -13.50916 -13.25504 -13.14198 -12.59860 -12.33571 -12.28453 -12.11951 -11.82377 -11.67867 -11.58714 -11.58091 -11.04301 -10.94946 -10.53390 -10.52070 -10.40728 -10.35352 -9.79141 -9.61160 -9.39265 -9.21957 -8.98910 -8.29832 -5.94859 -3.97440 1.73154 2.51473 2.78188 2.82215 3.35485 3.39956 3.42113 3.51084 3.67364 4.21370 4.48371 4.50081 4.57688 4.78852 4.84664 5.06541 5.20511 5.24916 5.27952 5.32022 5.36422 5.40552 5.42330 5.83232 6.00386 6.13832 6.22701 6.23543 6.30260 6.54536 6.84234 7.01806 7.18972 7.25969 7.63102 7.74202 7.90551 8.06543 8.17692 8.48314 9.10158 9.66177 11.16433 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.035828 B = 0.002789 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.318659 B =10037.403192 C =10330.988508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.021 3.979 10 C -0.111 4.111 11 C -0.102 4.102 12 C -0.136 4.136 13 C 0.510 3.490 14 O -0.497 6.497 15 N -0.726 5.726 16 C 0.155 3.845 17 C 0.484 3.516 18 O -0.519 6.519 19 O -0.472 6.472 20 C -0.152 4.152 21 C 0.045 3.955 22 O -0.362 6.362 23 C 0.053 3.947 24 H 0.260 0.740 25 H 0.016 0.984 26 H 0.015 0.985 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.407 0.593 34 H 0.402 0.598 35 H 0.095 0.905 36 H 0.108 0.892 37 H 0.068 0.932 38 H 0.102 0.898 39 H 0.072 0.928 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.412 -25.041 0.333 25.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.016 4.016 10 C -0.148 4.148 11 C -0.140 4.140 12 C -0.175 4.175 13 C 0.297 3.703 14 O -0.370 6.370 15 N -0.383 5.383 16 C 0.065 3.935 17 C 0.325 3.675 18 O -0.408 6.408 19 O -0.280 6.280 20 C -0.190 4.190 21 C -0.032 4.032 22 O -0.280 6.280 23 C -0.025 4.025 24 H 0.070 0.930 25 H 0.034 0.966 26 H 0.034 0.966 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.108 0.892 32 H 0.110 0.890 33 H 0.243 0.757 34 H 0.260 0.740 35 H 0.114 0.886 36 H 0.126 0.874 37 H 0.087 0.913 38 H 0.120 0.880 39 H 0.090 0.910 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 5.572 -25.083 -0.090 25.695 hybrid contribution 0.557 0.793 0.869 1.302 sum 6.129 -24.291 0.779 25.064 Atomic orbital electron populations 1.69966 1.06043 1.26623 1.50864 1.25038 0.94840 0.99211 0.95453 0.86672 0.79577 0.83268 0.78544 1.20283 1.21324 1.20301 1.21253 0.92949 0.91243 1.50516 0.92820 1.19083 0.94039 0.91237 0.97288 1.21655 0.99093 0.94039 1.00052 1.21448 0.96971 0.92571 1.03016 1.21784 1.00126 0.91603 1.04031 1.21197 0.88809 0.85187 0.75073 1.90737 1.13646 1.87012 1.45605 1.46222 1.10144 1.03703 1.78217 1.21363 0.92551 0.87238 0.92327 1.23362 0.78268 0.81726 0.84169 1.90711 1.61584 1.30287 1.58203 1.84978 1.58890 1.36916 1.47226 1.23302 0.98997 0.95266 1.01395 1.23484 0.98797 0.91458 0.89489 1.89226 1.61927 1.45540 1.31293 1.23721 0.92651 0.98804 0.87292 0.92987 0.96589 0.96626 0.93517 0.93483 0.91768 0.91687 0.89179 0.89035 0.75727 0.73958 0.88609 0.87363 0.91327 0.87968 0.90958 0.86400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.44 13.29 55.43 0.74 -26.71 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.84 29.54 -169.99 -5.02 16.81 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.52 -14.95 9.11 -34.44 -0.31 -15.27 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 10 C -0.11 -2.23 5.15 -26.73 -0.14 -2.37 16 11 C -0.10 -1.74 4.50 -26.73 -0.12 -1.86 16 12 C -0.14 -1.66 5.70 -27.88 -0.16 -1.82 16 13 C 0.51 6.35 6.62 -10.99 -0.07 6.28 16 14 O -0.50 -7.83 11.84 -18.95 -0.22 -8.05 16 15 N -0.73 -6.66 5.16 -47.22 -0.24 -6.90 16 16 C 0.15 1.48 1.00 -131.40 -0.13 1.35 16 17 C 0.48 5.47 7.07 36.01 0.25 5.73 16 18 O -0.52 -6.58 16.29 -18.75 -0.31 -6.88 16 19 O -0.47 -5.43 9.64 -47.35 -0.46 -5.88 16 20 C -0.15 -1.02 6.41 -25.16 -0.16 -1.18 16 21 C 0.04 0.30 7.63 37.93 0.29 0.59 16 22 O -0.36 -3.68 11.65 -35.23 -0.41 -4.09 16 23 C 0.05 0.56 6.47 37.93 0.25 0.81 16 24 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.06 1.17 8.10 -51.93 -0.42 0.75 16 30 H 0.06 1.18 8.10 -51.93 -0.42 0.76 16 31 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.41 2.51 8.15 -40.82 -0.33 2.17 16 34 H 0.40 3.03 9.10 45.56 0.41 3.44 16 35 H 0.10 0.43 7.54 -51.93 -0.39 0.04 16 36 H 0.11 0.77 6.73 -51.93 -0.35 0.42 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.74 7.86 -51.93 -0.41 0.33 16 40 H 0.12 1.43 6.64 -51.93 -0.34 1.09 16 LS Contribution 332.23 15.07 5.01 5.01 Total: -1.00 -35.53 332.23 -6.64 -42.16 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -5.18 Total: 0.36 kcal Atomic # 6 Polarization: -5.28 SS G_CDS: -0.54 Total: -5.82 kcal Atomic # 7 Polarization: -34.10 SS G_CDS: 0.49 Total: -33.61 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: -1.40 Total: -24.91 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -35.53 -6.64 -42.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608180237.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.460 kcal (2) G-P(sol) polarization free energy of solvation -35.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds