Wall clock time and date at job start Tue Mar 31 2020 05:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86794 * 119.99774 * 2 1 4 4 H 1.48500 * 109.47092 * 239.99609 * 3 2 1 5 5 H 1.48500 * 109.47415 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47070 * 119.99929 * 3 2 1 7 7 C 1.37874 * 119.99815 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99837 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00272 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47155 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47165 * 180.02562 * 10 9 7 12 12 C 1.52993 * 109.46989 * 179.97438 * 11 10 9 13 13 C 1.50705 * 109.47236 * 179.97438 * 12 11 10 14 14 O 1.21287 * 119.99610 * 0.02562 * 13 12 11 15 15 N 1.34770 * 120.00357 * 179.97438 * 13 12 11 16 16 C 1.46500 * 120.00310 * 180.02562 * 15 13 12 17 17 C 1.50706 * 110.45410 * 300.70486 * 16 15 13 18 18 O 1.20825 * 119.99859 * 216.14361 * 17 16 15 19 19 O 1.34224 * 120.00295 * 36.15319 * 17 16 15 20 20 C 1.54507 * 110.62861 * 178.01850 * 16 15 13 21 21 C 1.54481 * 104.06114 * 241.29514 * 20 16 15 22 22 O 1.44423 * 104.80287 * 23.98327 * 21 20 16 23 23 C 1.44420 * 105.27345 * 319.48509 * 22 21 20 24 24 H 0.96999 * 120.00077 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.47276 * 60.00320 * 9 7 2 26 26 H 1.08995 * 109.47544 * 300.00055 * 9 7 2 27 27 H 1.09002 * 109.47339 * 60.00184 * 10 9 7 28 28 H 1.09005 * 109.47099 * 299.99652 * 10 9 7 29 29 H 1.09002 * 109.47087 * 59.99729 * 11 10 9 30 30 H 1.09005 * 109.46897 * 300.00113 * 11 10 9 31 31 H 1.09002 * 109.47416 * 59.99944 * 12 11 10 32 32 H 1.09005 * 109.47404 * 299.99816 * 12 11 10 33 33 H 0.97003 * 119.99759 * 0.02562 * 15 13 12 34 34 H 0.96700 * 117.00196 * 179.97438 * 19 17 16 35 35 H 1.08995 * 110.51352 * 359.94525 * 20 16 15 36 36 H 1.09001 * 110.50739 * 122.65800 * 20 16 15 37 37 H 1.08994 * 110.37617 * 265.14579 * 21 20 16 38 38 H 1.08998 * 110.46414 * 142.85894 * 21 20 16 39 39 H 1.09003 * 110.37288 * 281.67883 * 23 22 21 40 40 H 1.09006 * 110.46719 * 159.39266 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6621 0.0027 11 6 1.4804 -4.9871 0.0033 12 6 2.4746 -6.1500 0.0037 13 6 1.7212 -7.4551 0.0048 14 8 0.5083 -7.4551 0.0048 15 7 2.3950 -8.6223 0.0048 16 6 1.6626 -9.8911 0.0054 17 6 0.7753 -9.9864 1.2199 18 8 0.6140 -11.0510 1.7681 19 8 0.1641 -8.8888 1.6924 20 6 2.6420 -11.0850 -0.0447 21 6 2.2838 -11.8093 -1.3614 22 8 1.6669 -10.7953 -2.1842 23 6 0.8286 -10.0352 -1.2869 24 1 -0.4850 0.8400 -0.0004 25 1 0.6241 -2.5575 -0.8880 26 1 0.6248 -2.5564 0.8919 27 1 2.8720 -3.6036 0.8927 28 1 2.8720 -3.6051 -0.8874 29 1 0.8540 -5.0454 -0.8869 30 1 0.8534 -5.0443 0.8931 31 1 3.1013 -6.0919 0.8936 32 1 3.1013 -6.0926 -0.8864 33 1 3.3650 -8.6222 0.0045 34 1 -0.3953 -8.9996 2.4733 35 1 3.6730 -10.7324 -0.0709 36 1 2.4843 -11.7443 0.8089 37 1 1.5820 -12.6208 -1.1693 38 1 3.1836 -12.1926 -1.8424 39 1 -0.0964 -10.5746 -1.0834 40 1 0.6100 -9.0541 -1.7088 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608180237.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:14 Heat of formation + Delta-G solvation = -211.057067 kcal Electronic energy + Delta-G solvation = -22760.124994 eV Core-core repulsion = 19152.442428 eV Total energy + Delta-G solvation = -3607.682566 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.35704 -40.43114 -39.75481 -37.21093 -36.63806 -35.73306 -34.57437 -32.40942 -31.31211 -30.04106 -27.38499 -25.49633 -24.56019 -23.86571 -21.91777 -21.39062 -20.98092 -19.52991 -18.50933 -18.38479 -18.00788 -17.54044 -16.99990 -16.66403 -16.50235 -16.20771 -16.17000 -15.43188 -15.18814 -14.52181 -14.42615 -14.13031 -13.82911 -13.62489 -13.53117 -13.25553 -13.01973 -12.84845 -12.76145 -12.61877 -12.35730 -12.22736 -12.10662 -12.09135 -11.89876 -11.32638 -11.31308 -11.11742 -11.03569 -10.65507 -10.52640 -10.24550 -8.17217 -6.29240 0.86771 1.41267 1.45071 1.52890 1.63995 1.95733 2.00099 2.43187 2.84365 3.02506 3.15475 3.48623 3.84108 3.97615 4.01513 4.09305 4.09615 4.21652 4.30902 4.54831 4.70931 4.71998 4.73701 4.77718 4.81273 4.90467 4.92850 5.22890 5.25236 5.36666 5.42502 5.44770 5.57134 5.60580 5.81921 5.90879 6.27569 6.48411 6.84275 6.89521 7.28844 7.40362 8.94753 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.035828 B = 0.002789 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.318659 B =10037.403192 C =10330.988508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.006 4.006 3 Si 0.968 3.032 4 H -0.265 1.265 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.543 4.543 8 H 0.066 0.934 9 C 0.020 3.980 10 C -0.097 4.097 11 C -0.094 4.094 12 C -0.126 4.126 13 C 0.510 3.490 14 O -0.538 6.538 15 N -0.707 5.707 16 C 0.152 3.848 17 C 0.484 3.516 18 O -0.536 6.536 19 O -0.485 6.485 20 C -0.143 4.143 21 C 0.040 3.960 22 O -0.377 6.377 23 C 0.055 3.945 24 H 0.263 0.737 25 H -0.016 1.016 26 H -0.016 1.016 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.044 0.956 30 H 0.045 0.955 31 H 0.116 0.884 32 H 0.118 0.882 33 H 0.425 0.575 34 H 0.415 0.585 35 H 0.125 0.875 36 H 0.107 0.893 37 H 0.071 0.929 38 H 0.130 0.870 39 H 0.068 0.932 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.465 -25.715 0.331 27.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.203 4.203 3 Si 0.792 3.208 4 H -0.189 1.189 5 H -0.211 1.211 6 H -0.189 1.189 7 C -0.581 4.581 8 H 0.084 0.916 9 C -0.018 4.018 10 C -0.134 4.134 11 C -0.132 4.132 12 C -0.165 4.165 13 C 0.298 3.702 14 O -0.413 6.413 15 N -0.365 5.365 16 C 0.063 3.937 17 C 0.325 3.675 18 O -0.427 6.427 19 O -0.295 6.295 20 C -0.180 4.180 21 C -0.036 4.036 22 O -0.296 6.296 23 C -0.023 4.023 24 H 0.071 0.929 25 H 0.003 0.997 26 H 0.003 0.997 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.134 0.866 32 H 0.136 0.864 33 H 0.264 0.736 34 H 0.275 0.725 35 H 0.144 0.856 36 H 0.125 0.875 37 H 0.089 0.911 38 H 0.148 0.852 39 H 0.086 0.914 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 8.674 -25.787 -0.086 27.207 hybrid contribution -0.458 0.958 0.874 1.376 sum 8.216 -24.829 0.788 26.165 Atomic orbital electron populations 1.70125 1.08040 1.27782 1.51897 1.26077 0.95765 1.03676 0.94821 0.85459 0.78195 0.77808 0.79336 1.18931 1.21130 1.18923 1.21752 0.93754 0.92334 1.50244 0.91618 1.19044 0.94684 0.93735 0.94292 1.21456 0.97819 0.92953 1.01201 1.21222 0.97435 0.93334 1.01187 1.21644 0.98956 0.89321 1.06586 1.21196 0.88293 0.86090 0.74622 1.90736 1.15380 1.87595 1.47603 1.45965 1.10984 1.02727 1.76828 1.21483 0.92999 0.88264 0.90994 1.23682 0.78119 0.81314 0.84363 1.90698 1.62287 1.30754 1.58918 1.84972 1.59193 1.37302 1.48072 1.23348 0.99709 0.93797 1.01177 1.23739 0.99781 0.90732 0.89388 1.89210 1.62000 1.46334 1.32032 1.23563 0.93064 0.97933 0.87772 0.92876 0.99718 0.99714 0.92202 0.92194 0.93733 0.93628 0.86569 0.86418 0.73564 0.72487 0.85643 0.87506 0.91120 0.85225 0.91414 0.88443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.88 13.29 21.45 0.28 -58.59 16 2 C -0.01 -0.37 5.46 84.65 0.46 0.10 16 3 Si 0.97 44.59 29.54 68.60 2.03 46.61 16 4 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 5 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 6 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 7 C -0.54 -31.30 9.11 25.60 0.23 -31.07 16 8 H 0.07 3.54 7.74 -2.91 -0.02 3.52 16 9 C 0.02 1.06 4.97 29.85 0.15 1.21 16 10 C -0.10 -3.84 5.15 30.60 0.16 -3.68 16 11 C -0.09 -3.19 4.50 30.59 0.14 -3.05 16 12 C -0.13 -2.79 5.70 29.85 0.17 -2.62 16 13 C 0.51 12.05 6.62 87.66 0.58 12.63 16 14 O -0.54 -17.11 11.84 20.37 0.24 -16.86 16 15 N -0.71 -11.37 5.16 -421.70 -2.17 -13.54 16 16 C 0.15 2.69 1.00 3.87 0.00 2.69 16 17 C 0.48 10.62 7.07 71.24 0.50 11.13 16 18 O -0.54 -13.25 16.29 21.97 0.36 -12.89 16 19 O -0.49 -11.18 9.64 -43.60 -0.42 -11.60 16 20 C -0.14 -1.53 6.41 31.61 0.20 -1.32 16 21 C 0.04 0.44 7.63 72.49 0.55 1.00 16 22 O -0.38 -7.16 11.65 -148.98 -1.74 -8.90 16 23 C 0.06 1.14 6.47 72.48 0.47 1.61 16 24 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 25 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 26 H -0.02 -0.93 8.14 -2.39 -0.02 -0.94 16 27 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 28 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16 29 H 0.04 1.67 8.10 -2.39 -0.02 1.65 16 30 H 0.04 1.71 8.10 -2.38 -0.02 1.69 16 31 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.12 2.06 8.14 -2.38 -0.02 2.04 16 33 H 0.42 3.66 8.15 -92.71 -0.76 2.90 16 34 H 0.41 6.38 9.10 -74.06 -0.67 5.71 16 35 H 0.13 0.59 7.54 -2.39 -0.02 0.57 16 36 H 0.11 1.26 6.73 -2.39 -0.02 1.24 16 37 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.13 0.74 8.14 -2.39 -0.02 0.73 16 39 H 0.07 1.42 7.86 -2.39 -0.02 1.40 16 40 H 0.10 2.43 6.64 -2.38 -0.02 2.41 16 Total: -1.00 -79.15 332.23 1.84 -77.32 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -0.36 Total: 9.84 kcal Atomic # 6 Polarization: -15.00 SS G_CDS: 3.62 Total: -11.38 kcal Atomic # 7 Polarization: -70.24 SS G_CDS: -1.89 Total: -72.13 kcal Atomic # 8 Polarization: -48.70 SS G_CDS: -1.56 Total: -50.26 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.61 kcal Total: -79.15 1.84 -77.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608180237.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.742 kcal (2) G-P(sol) polarization free energy of solvation -79.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds