Wall clock time and date at job start Tue Mar 31 2020 05:36:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48502 * 109.46964 * 90.00629 * 3 2 1 5 5 H 1.48505 * 109.47036 * 210.00017 * 3 2 1 6 6 H 1.48490 * 109.47395 * 330.00531 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3 8 8 H 1.07998 * 120.00063 * 359.97438 * 7 2 1 9 9 C 1.50706 * 120.00436 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.47153 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.46737 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.47091 * 179.97438 * 11 10 9 13 13 C 1.50696 * 109.47133 * 180.02562 * 12 11 10 14 14 O 1.21281 * 120.00074 * 0.02562 * 13 12 11 15 15 N 1.34777 * 120.00076 * 179.97438 * 13 12 11 16 16 C 1.46496 * 120.00345 * 179.97438 * 15 13 12 17 17 C 1.50698 * 110.45324 * 57.40155 * 16 15 13 18 18 O 1.20826 * 119.99771 * 145.70479 * 17 16 15 19 19 O 1.34229 * 120.00069 * 325.69422 * 17 16 15 20 20 C 1.54507 * 110.51411 * 180.02562 * 16 15 13 21 21 C 1.54482 * 104.06446 * 118.64357 * 20 16 15 22 22 O 1.44422 * 104.80119 * 336.02511 * 21 20 16 23 23 C 1.44428 * 105.27714 * 40.51090 * 22 21 20 24 24 H 0.96999 * 120.00235 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46762 * 299.99954 * 9 7 2 26 26 H 1.09001 * 109.46863 * 60.00053 * 9 7 2 27 27 H 1.08991 * 109.47217 * 299.99935 * 10 9 7 28 28 H 1.09001 * 109.46939 * 60.00411 * 10 9 7 29 29 H 1.08999 * 109.47855 * 300.00574 * 11 10 9 30 30 H 1.09001 * 109.46830 * 60.00639 * 11 10 9 31 31 H 1.09007 * 109.47086 * 300.00675 * 12 11 10 32 32 H 1.09001 * 109.46760 * 60.00599 * 12 11 10 33 33 H 0.97004 * 119.99652 * 0.02562 * 15 13 12 34 34 H 0.96700 * 116.99843 * 180.02562 * 19 17 16 35 35 H 1.08998 * 110.51424 * 237.29146 * 20 16 15 36 36 H 1.09008 * 110.51219 * 359.86705 * 20 16 15 37 37 H 1.09000 * 110.36694 * 94.85549 * 21 20 16 38 38 H 1.08993 * 110.37432 * 217.08049 * 21 20 16 39 39 H 1.09009 * 110.37062 * 200.65681 * 23 22 21 40 40 H 1.08997 * 110.37523 * 78.31530 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7001 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1939 0.0056 8 1 1.4647 -2.1293 0.0104 9 6 3.5117 -1.1939 0.0050 10 6 4.0217 -2.6364 0.0126 11 6 5.5516 -2.6363 0.0113 12 6 6.0618 -4.0788 0.0195 13 6 7.5687 -4.0787 0.0189 14 8 8.1751 -3.0283 0.0130 15 7 8.2427 -5.2458 0.0260 16 6 9.7077 -5.2458 0.0248 17 6 10.2352 -4.4774 1.2090 18 8 11.2567 -4.8284 1.7505 19 8 9.5703 -3.4029 1.6621 20 6 10.2492 -6.6928 0.0331 21 6 11.0525 -6.8006 -1.2820 22 8 10.4830 -5.7930 -2.1458 23 6 10.2480 -4.6504 -1.2942 24 1 -0.4850 0.8400 0.0004 25 1 3.8746 -0.6844 -0.8877 26 1 3.8753 -0.6757 0.8924 27 1 3.6588 -3.1454 0.9053 28 1 3.6581 -3.1550 -0.8746 29 1 5.9143 -2.1273 -0.8817 30 1 5.9156 -2.1176 0.8982 31 1 5.6991 -4.5874 0.9128 32 1 5.6978 -4.5978 -0.8672 33 1 7.7577 -6.0859 0.0310 34 1 9.9478 -2.9422 2.4239 35 1 10.9004 -6.8520 0.8926 36 1 9.4268 -7.4083 0.0405 37 1 12.1070 -6.5930 -1.1005 38 1 10.9315 -7.7911 -1.7204 39 1 9.5073 -3.9885 -1.7433 40 1 11.1791 -4.1130 -1.1146 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608180239.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:17 Heat of formation + Delta-G solvation = -180.830529 kcal Electronic energy + Delta-G solvation = -22829.323638 eV Core-core repulsion = 19222.951793 eV Total energy + Delta-G solvation = -3606.371845 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.58252 -39.53360 -38.99482 -36.34121 -35.26460 -34.77226 -32.61952 -31.57811 -30.28519 -29.21612 -25.96149 -24.64504 -23.66929 -22.31502 -20.69808 -20.11006 -20.02170 -18.70629 -17.71500 -17.22208 -16.81437 -16.51408 -16.28425 -15.61991 -15.48689 -15.41091 -14.50189 -14.18729 -14.05770 -13.57729 -13.34075 -13.16827 -12.65158 -12.47986 -12.38890 -12.22564 -12.02100 -11.85214 -11.75121 -11.61485 -11.15480 -11.01653 -10.74228 -10.54148 -10.40529 -9.95755 -9.81195 -9.65522 -9.44507 -9.42519 -9.12118 -8.49553 -6.00678 -3.98234 1.69570 2.47824 2.71516 2.76528 3.35014 3.42179 3.46580 3.47851 3.63703 4.17066 4.45379 4.49836 4.53474 4.73695 4.78908 5.01261 5.16731 5.21053 5.22152 5.25055 5.28410 5.34407 5.35486 5.74935 5.95069 6.02231 6.13700 6.18580 6.19818 6.40462 6.67835 6.81477 6.98521 7.19076 7.37917 7.50750 7.59255 7.84687 8.11612 8.58184 9.04377 9.62703 11.12869 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.032109 B = 0.003007 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 871.821387 B = 9309.470988 C = 9594.819132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.064 3.936 3 Si 0.880 3.120 4 H -0.278 1.278 5 H -0.264 1.264 6 H -0.289 1.289 7 C -0.520 4.520 8 H 0.071 0.929 9 C -0.015 4.015 10 C -0.103 4.103 11 C -0.105 4.105 12 C -0.136 4.136 13 C 0.509 3.491 14 O -0.497 6.497 15 N -0.725 5.725 16 C 0.155 3.845 17 C 0.484 3.516 18 O -0.519 6.519 19 O -0.470 6.470 20 C -0.152 4.152 21 C 0.045 3.955 22 O -0.361 6.361 23 C 0.054 3.946 24 H 0.262 0.738 25 H 0.015 0.985 26 H 0.011 0.989 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.407 0.593 34 H 0.401 0.599 35 H 0.107 0.893 36 H 0.096 0.904 37 H 0.069 0.931 38 H 0.103 0.897 39 H 0.116 0.884 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.189 -15.706 0.391 28.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.136 4.136 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.189 1.189 6 H -0.215 1.215 7 C -0.558 4.558 8 H 0.089 0.911 9 C -0.052 4.052 10 C -0.141 4.141 11 C -0.143 4.143 12 C -0.176 4.176 13 C 0.297 3.703 14 O -0.370 6.370 15 N -0.383 5.383 16 C 0.065 3.935 17 C 0.325 3.675 18 O -0.407 6.407 19 O -0.278 6.278 20 C -0.190 4.190 21 C -0.032 4.032 22 O -0.280 6.280 23 C -0.024 4.024 24 H 0.072 0.928 25 H 0.034 0.966 26 H 0.029 0.971 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.110 0.890 32 H 0.111 0.889 33 H 0.243 0.757 34 H 0.259 0.741 35 H 0.126 0.874 36 H 0.114 0.886 37 H 0.087 0.913 38 H 0.121 0.879 39 H 0.134 0.866 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 23.520 -15.093 -0.033 27.946 hybrid contribution 0.393 0.753 0.877 1.221 sum 23.912 -14.341 0.845 27.896 Atomic orbital electron populations 1.69920 1.06322 1.26833 1.51493 1.25044 0.94728 0.99231 0.94618 0.86770 0.80427 0.83553 0.78513 1.20338 1.18893 1.21477 1.21190 0.89701 0.94378 1.50492 0.91120 1.19572 0.96879 0.92495 0.96290 1.21477 0.91744 0.99916 1.00926 1.21478 0.97159 0.92701 1.02946 1.21763 0.89647 1.01893 1.04257 1.21173 0.90972 0.83028 0.75126 1.90729 1.69966 1.30675 1.45629 1.46225 1.03667 1.10236 1.78129 1.21366 0.83489 0.95953 0.92697 1.23338 0.81687 0.78969 0.83520 1.90716 1.24813 1.67981 1.57238 1.85029 1.53879 1.39913 1.49022 1.23306 1.01888 0.92278 1.01492 1.23482 0.97233 0.93776 0.88718 1.89226 1.82867 1.24122 1.31748 1.23714 1.01326 0.89582 0.87782 0.92814 0.96619 0.97089 0.92898 0.92840 0.91761 0.91695 0.89014 0.88883 0.75658 0.74136 0.87422 0.88569 0.91291 0.87922 0.86577 0.90925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.32 13.96 55.43 0.77 -27.55 16 2 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 22.21 27.46 -169.99 -4.67 17.54 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.26 -6.46 6.55 56.52 0.37 -6.09 16 6 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 7 C -0.52 -15.00 9.66 -34.44 -0.33 -15.34 16 8 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 9 C -0.02 -0.36 4.04 -27.88 -0.11 -0.48 16 10 C -0.10 -1.97 5.15 -26.73 -0.14 -2.11 16 11 C -0.10 -1.66 4.50 -26.73 -0.12 -1.78 16 12 C -0.14 -1.56 5.70 -27.88 -0.16 -1.72 16 13 C 0.51 6.00 6.62 -10.99 -0.07 5.92 16 14 O -0.50 -7.41 11.83 -19.24 -0.23 -7.64 16 15 N -0.73 -6.29 5.15 -47.23 -0.24 -6.53 16 16 C 0.15 1.41 0.99 -131.41 -0.13 1.28 16 17 C 0.48 5.28 7.06 36.00 0.25 5.53 16 18 O -0.52 -6.41 16.34 -18.75 -0.31 -6.71 16 19 O -0.47 -5.18 9.44 -47.46 -0.45 -5.63 16 20 C -0.15 -0.97 6.40 -25.16 -0.16 -1.13 16 21 C 0.04 0.29 7.63 37.94 0.29 0.58 16 22 O -0.36 -3.52 11.65 -35.23 -0.41 -3.93 16 23 C 0.05 0.54 6.49 37.93 0.25 0.79 16 24 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 25 H 0.02 0.38 7.21 -51.93 -0.37 0.01 16 26 H 0.01 0.26 7.56 -51.93 -0.39 -0.13 16 27 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.06 1.08 8.10 -51.93 -0.42 0.65 16 30 H 0.06 1.08 8.10 -51.93 -0.42 0.66 16 31 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.41 2.34 8.14 -40.82 -0.33 2.01 16 34 H 0.40 2.86 9.10 45.56 0.41 3.28 16 35 H 0.11 0.73 6.78 -51.93 -0.35 0.38 16 36 H 0.10 0.40 7.53 -51.92 -0.39 0.01 16 37 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.12 1.33 6.82 -51.92 -0.35 0.98 16 40 H 0.07 0.71 7.86 -51.93 -0.41 0.30 16 LS Contribution 328.67 15.07 4.95 4.95 Total: -1.00 -35.85 328.67 -6.26 -42.12 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -5.15 Total: 0.01 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: -0.53 Total: -6.64 kcal Atomic # 7 Polarization: -34.61 SS G_CDS: 0.53 Total: -34.08 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: -1.39 Total: -23.92 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.67 Total: 17.54 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -35.85 -6.26 -42.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608180239.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.712 kcal (2) G-P(sol) polarization free energy of solvation -35.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds