Wall clock time and date at job start Tue Mar 31 2020 05:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48494 * 109.47228 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 119.99882 * 3 2 1 6 6 H 1.48500 * 109.47000 * 239.99975 * 3 2 1 7 7 C 1.37871 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47208 * 180.02562 * 9 7 2 11 11 C 1.50695 * 109.47535 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99476 * 0.02562 * 11 10 9 13 13 N 1.34769 * 120.00194 * 180.02562 * 11 10 9 14 14 C 1.46507 * 120.00057 * 179.97438 * 13 11 10 15 15 H 1.09000 * 109.46562 * 324.99926 * 14 13 11 16 16 C 1.52994 * 109.47127 * 204.99969 * 14 13 11 17 17 C 1.52992 * 109.47349 * 64.99728 * 16 14 13 18 18 H 1.09009 * 110.27280 * 55.63702 * 17 16 14 19 19 C 1.54951 * 110.30971 * 177.83209 * 17 16 14 20 20 C 1.55309 * 100.93979 * 155.36325 * 19 17 16 21 21 C 1.54381 * 102.25154 * 325.86544 * 20 19 17 22 22 O 1.43240 * 107.58886 * 21.36066 * 21 20 19 23 23 C 1.50705 * 109.47055 * 84.99583 * 14 13 11 24 24 O 1.20832 * 119.99930 * 0.02562 * 23 14 13 25 25 O 1.34218 * 119.99911 * 179.97438 * 23 14 13 26 26 H 0.97005 * 119.99661 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.46850 * 299.99881 * 9 7 2 28 28 H 1.08998 * 109.47115 * 59.99805 * 9 7 2 29 29 H 1.09000 * 109.46887 * 300.00372 * 10 9 7 30 30 H 1.08998 * 109.46846 * 59.99549 * 10 9 7 31 31 H 0.97000 * 120.00347 * 359.97438 * 13 11 10 32 32 H 1.08997 * 109.46891 * 185.00415 * 16 14 13 33 33 H 1.08998 * 109.46806 * 304.99685 * 16 14 13 34 34 H 1.09003 * 111.12130 * 273.27804 * 19 17 16 35 35 H 1.08995 * 111.12226 * 37.44462 * 19 17 16 36 36 H 1.09000 * 110.84386 * 207.67625 * 20 19 17 37 37 H 1.09001 * 110.84641 * 84.05519 * 20 19 17 38 38 H 1.08990 * 109.83337 * 261.83994 * 21 20 19 39 39 H 1.09007 * 109.82911 * 140.87306 * 21 20 19 40 40 H 0.96702 * 117.00400 * 180.02562 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1027 1.6965 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 6 1.4920 -4.9672 0.0012 12 8 0.2792 -4.9672 -0.0006 13 7 2.1659 -6.1343 0.0026 14 6 1.4335 -7.4031 0.0026 15 1 0.5222 -7.2965 0.5910 16 6 2.3101 -8.4980 0.6138 17 6 2.5693 -8.1803 2.0878 18 1 1.6255 -8.0550 2.6188 19 6 3.4108 -9.3057 2.7406 20 6 4.0763 -8.5341 3.9127 21 6 4.2824 -7.1298 3.3052 22 8 3.3707 -6.9944 2.2088 23 6 1.0766 -7.7771 -1.4130 24 8 1.4012 -7.0577 -2.3280 25 8 0.3991 -8.9096 -1.6575 26 1 -0.4850 -0.8401 -0.0004 27 1 0.6241 -2.5566 0.8903 28 1 0.6248 -2.5571 -0.8896 29 1 2.8727 -3.6046 -0.8877 30 1 2.8714 -3.6038 0.8922 31 1 3.1359 -6.1343 0.0037 32 1 1.8009 -9.4583 0.5331 33 1 3.2591 -8.5440 0.0797 34 1 2.7732 -10.1086 3.1107 35 1 4.1595 -9.6889 2.0473 36 1 5.0318 -8.9848 4.1809 37 1 3.4112 -8.4898 4.7752 38 1 5.3073 -7.0280 2.9487 39 1 4.0735 -6.3678 4.0562 40 1 0.1933 -9.1074 -2.5814 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608180626.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:27 Heat of formation + Delta-G solvation = -193.719816 kcal Electronic energy + Delta-G solvation = -23123.505612 eV Core-core repulsion = 19516.574845 eV Total energy + Delta-G solvation = -3606.930766 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.70059 -39.61986 -38.82766 -36.17499 -35.29805 -33.67324 -32.57959 -31.86709 -30.62067 -28.54228 -25.26699 -24.70289 -22.39218 -21.89081 -21.49742 -20.83672 -19.74984 -18.16935 -17.17580 -17.05993 -16.90595 -16.09844 -16.03688 -15.63795 -15.37145 -14.93816 -14.56615 -13.79636 -13.64830 -13.53015 -13.31763 -13.25891 -12.78793 -12.30685 -12.08616 -12.01559 -11.92357 -11.61737 -11.48472 -11.43119 -11.31281 -11.15541 -10.75762 -10.56630 -10.07202 -9.99804 -9.83399 -9.71741 -9.25022 -8.91780 -8.44749 -8.20512 -6.24089 -3.93200 2.17099 2.69948 3.31434 3.48268 3.50065 3.53278 3.63967 3.71843 4.14699 4.22088 4.56393 4.61462 4.64393 4.75793 4.87680 5.03093 5.07903 5.23208 5.34236 5.37915 5.40209 5.49215 5.53756 5.60063 5.66758 5.75493 5.82351 6.26322 6.26564 6.42220 6.60608 6.81088 6.87509 7.62101 7.68506 7.84137 7.88739 8.29382 8.58360 8.76106 9.00674 9.80229 11.16937 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.016052 B = 0.004262 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.929664 B = 6567.568311 C = 7934.799964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.014 3.986 3 Si 1.070 2.930 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.289 1.289 7 C -0.606 4.606 8 H 0.049 0.951 9 C 0.025 3.975 10 C -0.119 4.119 11 C 0.521 3.479 12 O -0.542 6.542 13 N -0.707 5.707 14 C 0.163 3.837 15 H 0.123 0.877 16 C -0.120 4.120 17 C 0.082 3.918 18 H 0.077 0.923 19 C -0.151 4.151 20 C -0.156 4.156 21 C 0.049 3.951 22 O -0.369 6.369 23 C 0.461 3.539 24 O -0.498 6.498 25 O -0.520 6.520 26 H 0.272 0.728 27 H 0.014 0.986 28 H 0.014 0.986 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.408 0.592 32 H 0.104 0.896 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.929 -24.519 5.497 26.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.190 4.190 3 Si 0.899 3.101 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.215 1.215 7 C -0.644 4.644 8 H 0.067 0.933 9 C -0.013 4.013 10 C -0.159 4.159 11 C 0.311 3.689 12 O -0.418 6.418 13 N -0.362 5.362 14 C 0.054 3.946 15 H 0.141 0.859 16 C -0.158 4.158 17 C 0.025 3.975 18 H 0.095 0.905 19 C -0.188 4.188 20 C -0.194 4.194 21 C -0.028 4.028 22 O -0.288 6.288 23 C 0.300 3.700 24 O -0.384 6.384 25 O -0.332 6.332 26 H 0.082 0.918 27 H 0.032 0.968 28 H 0.032 0.968 29 H 0.099 0.901 30 H 0.102 0.898 31 H 0.245 0.755 32 H 0.122 0.878 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 8.018 -22.365 5.517 24.391 hybrid contribution 0.581 -2.093 -0.555 2.242 sum 8.599 -24.457 4.962 26.396 Atomic orbital electron populations 1.70730 1.06907 1.30951 1.46259 1.25837 0.96586 1.02630 0.93917 0.83537 0.74826 0.75385 0.76376 1.20826 1.21505 1.21514 1.22040 0.94167 0.92023 1.56190 0.93277 1.19013 0.93860 0.91184 0.97219 1.21674 1.00382 0.90995 1.02830 1.21550 0.88484 0.85701 0.73182 1.90641 1.14623 1.87650 1.48841 1.45856 1.10359 1.03370 1.76575 1.20243 0.98936 0.86402 0.89013 0.85918 1.22031 1.00658 0.97832 0.95247 1.22957 0.95115 0.84710 0.94738 0.90521 1.23301 0.99685 0.98235 0.97622 1.23119 1.01888 0.95728 0.98638 1.23132 0.93873 0.96496 0.89257 1.88508 1.51539 1.37818 1.50934 1.24351 0.74249 0.77874 0.93520 1.90748 1.50433 1.50595 1.46611 1.84507 1.69905 1.42156 1.36610 0.91769 0.96766 0.96809 0.90063 0.89811 0.75532 0.87804 0.89912 0.89767 0.90155 0.90091 0.90497 0.91263 0.91232 0.73407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -29.69 13.65 55.43 0.76 -28.93 16 2 C 0.01 0.43 5.46 -17.82 -0.10 0.34 16 3 Si 1.07 26.21 29.90 -169.99 -5.08 21.12 16 4 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 7 C -0.61 -18.12 9.11 -34.44 -0.31 -18.43 16 8 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 9 C 0.02 0.70 3.57 -27.88 -0.10 0.60 16 10 C -0.12 -2.64 5.64 -27.88 -0.16 -2.80 16 11 C 0.52 10.87 7.66 -10.99 -0.08 10.79 16 12 O -0.54 -13.35 15.65 5.55 0.09 -13.26 16 13 N -0.71 -11.00 3.47 -54.93 -0.19 -11.19 16 14 C 0.16 2.10 2.48 -69.08 -0.17 1.93 16 15 H 0.12 1.70 7.58 -51.93 -0.39 1.31 16 16 C -0.12 -1.00 4.54 -26.74 -0.12 -1.12 16 17 C 0.08 0.70 3.43 -25.71 -0.09 0.62 16 18 H 0.08 0.69 8.14 -51.92 -0.42 0.27 16 19 C -0.15 -0.89 6.57 -24.48 -0.16 -1.05 16 20 C -0.16 -0.96 7.02 -24.78 -0.17 -1.13 16 21 C 0.05 0.42 7.79 37.88 0.30 0.71 16 22 O -0.37 -4.04 8.99 -35.23 -0.32 -4.35 16 23 C 0.46 6.44 7.66 36.01 0.28 6.72 16 24 O -0.50 -9.05 17.08 -18.75 -0.32 -9.37 16 25 O -0.52 -5.20 13.23 -39.23 -0.52 -5.72 16 26 H 0.27 9.00 7.22 -40.82 -0.29 8.71 16 27 H 0.01 0.42 7.97 -51.93 -0.41 0.01 16 28 H 0.01 0.42 7.96 -51.93 -0.41 0.01 16 29 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 30 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 31 H 0.41 5.55 7.74 -40.82 -0.32 5.23 16 32 H 0.10 0.65 7.99 -51.93 -0.42 0.23 16 33 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.08 0.43 8.06 -51.93 -0.42 0.01 16 36 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.41 2.52 9.10 45.56 0.41 2.93 16 LS Contribution 338.86 15.07 5.11 5.11 Total: -1.00 -39.13 338.86 -6.63 -45.77 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -5.26 Total: 3.68 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: -0.90 Total: -2.84 kcal Atomic # 7 Polarization: -40.69 SS G_CDS: 0.57 Total: -40.12 kcal Atomic # 8 Polarization: -31.64 SS G_CDS: -1.07 Total: -32.71 kcal Atomic # 14 Polarization: 26.21 SS G_CDS: -5.08 Total: 21.12 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -39.13 -6.63 -45.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608180626.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.955 kcal (2) G-P(sol) polarization free energy of solvation -39.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds