Wall clock time and date at job start Tue Mar 31 2020 05:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99576 * 2 1 4 4 H 1.48494 * 109.47228 * 359.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 119.99882 * 3 2 1 6 6 H 1.48500 * 109.47000 * 239.99975 * 3 2 1 7 7 C 1.37871 * 120.00147 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00147 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00083 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47208 * 180.02562 * 9 7 2 11 11 C 1.50695 * 109.47535 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99476 * 0.02562 * 11 10 9 13 13 N 1.34769 * 120.00194 * 180.02562 * 11 10 9 14 14 C 1.46507 * 120.00057 * 179.97438 * 13 11 10 15 15 H 1.09000 * 109.46562 * 324.99926 * 14 13 11 16 16 C 1.52994 * 109.47127 * 204.99969 * 14 13 11 17 17 C 1.52992 * 109.47349 * 64.99728 * 16 14 13 18 18 H 1.09009 * 110.27280 * 55.63702 * 17 16 14 19 19 C 1.54951 * 110.30971 * 177.83209 * 17 16 14 20 20 C 1.55309 * 100.93979 * 155.36325 * 19 17 16 21 21 C 1.54381 * 102.25154 * 325.86544 * 20 19 17 22 22 O 1.43240 * 107.58886 * 21.36066 * 21 20 19 23 23 C 1.50705 * 109.47055 * 84.99583 * 14 13 11 24 24 O 1.20832 * 119.99930 * 0.02562 * 23 14 13 25 25 O 1.34218 * 119.99911 * 179.97438 * 23 14 13 26 26 H 0.97005 * 119.99661 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.46850 * 299.99881 * 9 7 2 28 28 H 1.08998 * 109.47115 * 59.99805 * 9 7 2 29 29 H 1.09000 * 109.46887 * 300.00372 * 10 9 7 30 30 H 1.08998 * 109.46846 * 59.99549 * 10 9 7 31 31 H 0.97000 * 120.00347 * 359.97438 * 13 11 10 32 32 H 1.08997 * 109.46891 * 185.00415 * 16 14 13 33 33 H 1.08998 * 109.46806 * 304.99685 * 16 14 13 34 34 H 1.09003 * 111.12130 * 273.27804 * 19 17 16 35 35 H 1.08995 * 111.12226 * 37.44462 * 19 17 16 36 36 H 1.09000 * 110.84386 * 207.67625 * 20 19 17 37 37 H 1.09001 * 110.84641 * 84.05519 * 20 19 17 38 38 H 1.08990 * 109.83337 * 261.83994 * 21 20 19 39 39 H 1.09007 * 109.82911 * 140.87306 * 21 20 19 40 40 H 0.96702 * 117.00400 * 180.02562 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1027 1.6965 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 6 1.4920 -4.9672 0.0012 12 8 0.2792 -4.9672 -0.0006 13 7 2.1659 -6.1343 0.0026 14 6 1.4335 -7.4031 0.0026 15 1 0.5222 -7.2965 0.5910 16 6 2.3101 -8.4980 0.6138 17 6 2.5693 -8.1803 2.0878 18 1 1.6255 -8.0550 2.6188 19 6 3.4108 -9.3057 2.7406 20 6 4.0763 -8.5341 3.9127 21 6 4.2824 -7.1298 3.3052 22 8 3.3707 -6.9944 2.2088 23 6 1.0766 -7.7771 -1.4130 24 8 1.4012 -7.0577 -2.3280 25 8 0.3991 -8.9096 -1.6575 26 1 -0.4850 -0.8401 -0.0004 27 1 0.6241 -2.5566 0.8903 28 1 0.6248 -2.5571 -0.8896 29 1 2.8727 -3.6046 -0.8877 30 1 2.8714 -3.6038 0.8922 31 1 3.1359 -6.1343 0.0037 32 1 1.8009 -9.4583 0.5331 33 1 3.2591 -8.5440 0.0797 34 1 2.7732 -10.1086 3.1107 35 1 4.1595 -9.6889 2.0473 36 1 5.0318 -8.9848 4.1809 37 1 3.4112 -8.4898 4.7752 38 1 5.3073 -7.0280 2.9487 39 1 4.0735 -6.3678 4.0562 40 1 0.1933 -9.1074 -2.5814 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608180626.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:26 Heat of formation + Delta-G solvation = -223.601210 kcal Electronic energy + Delta-G solvation = -23124.801366 eV Core-core repulsion = 19516.574845 eV Total energy + Delta-G solvation = -3608.226521 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.85086 -40.47380 -40.21206 -37.25273 -36.54178 -35.89700 -33.52556 -32.96794 -32.30432 -29.55273 -27.16219 -25.70238 -24.23345 -22.72907 -22.22527 -21.92767 -21.32591 -19.25631 -19.03193 -18.18215 -17.85194 -17.75385 -17.03014 -16.69328 -16.48666 -16.25906 -15.64704 -15.60376 -15.32620 -14.55001 -14.36760 -14.17723 -14.02607 -14.00936 -13.66941 -13.37360 -12.75414 -12.66540 -12.61085 -12.56771 -12.26758 -12.09606 -12.04901 -12.04663 -11.85956 -11.64111 -11.62169 -11.04809 -10.69105 -10.55836 -10.41513 -10.30007 -8.70413 -6.41698 1.06361 1.42659 1.53712 1.64526 1.83127 1.88951 2.32913 2.60353 2.88793 3.16556 3.47023 3.62021 3.87545 3.92661 4.01350 4.08155 4.21360 4.30390 4.36173 4.37817 4.40136 4.55820 4.72602 4.79156 4.89039 4.91121 4.97460 5.06349 5.10731 5.23258 5.31145 5.34803 5.36005 5.51205 5.93247 6.15871 6.17245 6.46097 6.51218 6.87358 7.19919 7.44444 8.69438 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.016052 B = 0.004262 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.929664 B = 6567.568311 C = 7934.799964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.045 4.045 3 Si 1.126 2.874 4 H -0.286 1.286 5 H -0.262 1.262 6 H -0.265 1.265 7 C -0.619 4.619 8 H 0.066 0.934 9 C 0.029 3.971 10 C -0.111 4.111 11 C 0.522 3.478 12 O -0.590 6.590 13 N -0.685 5.685 14 C 0.155 3.845 15 H 0.113 0.887 16 C -0.106 4.106 17 C 0.073 3.927 18 H 0.067 0.933 19 C -0.140 4.140 20 C -0.151 4.151 21 C 0.040 3.960 22 O -0.398 6.398 23 C 0.468 3.532 24 O -0.547 6.547 25 O -0.501 6.501 26 H 0.250 0.750 27 H -0.018 1.018 28 H -0.025 1.025 29 H 0.095 0.905 30 H 0.105 0.895 31 H 0.420 0.580 32 H 0.134 0.866 33 H 0.095 0.905 34 H 0.102 0.898 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.076 0.924 38 H 0.077 0.923 39 H 0.057 0.943 40 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.378 -26.305 5.940 29.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.241 4.241 3 Si 0.946 3.054 4 H -0.211 1.211 5 H -0.187 1.187 6 H -0.190 1.190 7 C -0.657 4.657 8 H 0.084 0.916 9 C -0.008 4.008 10 C -0.150 4.150 11 C 0.311 3.689 12 O -0.470 6.470 13 N -0.338 5.338 14 C 0.048 3.952 15 H 0.130 0.870 16 C -0.143 4.143 17 C 0.016 3.984 18 H 0.085 0.915 19 C -0.177 4.177 20 C -0.189 4.189 21 C -0.036 4.036 22 O -0.319 6.319 23 C 0.309 3.691 24 O -0.437 6.437 25 O -0.314 6.314 26 H 0.059 0.941 27 H 0.000 1.000 28 H -0.007 1.007 29 H 0.114 0.886 30 H 0.123 0.877 31 H 0.259 0.741 32 H 0.152 0.848 33 H 0.113 0.887 34 H 0.121 0.879 35 H 0.111 0.889 36 H 0.117 0.883 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.075 0.925 40 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges 10.508 -24.256 5.964 27.099 hybrid contribution -0.225 -1.666 -0.693 1.818 sum 10.282 -25.922 5.271 28.381 Atomic orbital electron populations 1.70896 1.08336 1.29631 1.48735 1.27719 0.96510 1.07445 0.92468 0.82859 0.73982 0.70229 0.78363 1.21140 1.18668 1.19033 1.22490 0.95161 0.92685 1.55354 0.91578 1.18838 0.94279 0.93857 0.93833 1.21458 0.99104 0.89958 1.04505 1.21208 0.87705 0.86824 0.73190 1.90621 1.16457 1.88386 1.51546 1.45541 1.10898 1.03119 1.74282 1.20568 0.99416 0.86279 0.88968 0.86969 1.22077 1.00442 0.96992 0.94789 1.23097 0.95103 0.85305 0.94882 0.91517 1.23277 0.99627 0.97508 0.97317 1.23110 1.02872 0.94262 0.98623 1.23259 0.93823 0.97798 0.88735 1.88463 1.52215 1.39415 1.51772 1.24386 0.73532 0.78013 0.93164 1.90743 1.52667 1.52284 1.47985 1.84446 1.68505 1.40021 1.38460 0.94054 0.99976 1.00699 0.88641 0.87675 0.74107 0.84777 0.88683 0.87948 0.88929 0.88346 0.90530 0.90490 0.92493 0.71073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -63.12 13.65 21.45 0.29 -62.83 16 2 C -0.05 -2.77 5.46 84.65 0.46 -2.31 16 3 Si 1.13 52.02 29.90 68.60 2.05 54.08 16 4 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 5 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 6 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 7 C -0.62 -37.47 9.11 25.60 0.23 -37.24 16 8 H 0.07 3.70 7.74 -2.91 -0.02 3.68 16 9 C 0.03 1.74 3.57 29.85 0.11 1.85 16 10 C -0.11 -4.98 5.64 29.85 0.17 -4.82 16 11 C 0.52 22.31 7.66 87.66 0.67 22.98 16 12 O -0.59 -30.52 15.65 -3.04 -0.05 -30.56 16 13 N -0.68 -21.09 3.47 -446.10 -1.55 -22.64 16 14 C 0.16 3.86 2.48 44.24 0.11 3.97 16 15 H 0.11 3.11 7.58 -2.39 -0.02 3.09 16 16 C -0.11 -1.48 4.54 30.59 0.14 -1.34 16 17 C 0.07 1.10 3.43 31.26 0.11 1.21 16 18 H 0.07 1.13 8.14 -2.38 -0.02 1.11 16 19 C -0.14 -1.18 6.57 32.05 0.21 -0.97 16 20 C -0.15 -1.49 7.02 31.86 0.22 -1.26 16 21 C 0.04 0.63 7.79 72.45 0.56 1.20 16 22 O -0.40 -8.24 8.99 -148.98 -1.34 -9.58 16 23 C 0.47 12.57 7.66 71.24 0.55 13.11 16 24 O -0.55 -19.79 17.08 21.95 0.37 -19.42 16 25 O -0.50 -8.89 13.23 -51.30 -0.68 -9.57 16 26 H 0.25 17.56 7.22 -92.70 -0.67 16.89 16 27 H -0.02 -1.17 7.97 -2.39 -0.02 -1.19 16 28 H -0.03 -1.68 7.96 -2.39 -0.02 -1.70 16 29 H 0.10 4.01 8.14 -2.39 -0.02 3.99 16 30 H 0.11 4.25 8.14 -2.39 -0.02 4.23 16 31 H 0.42 10.93 7.74 -92.71 -0.72 10.21 16 32 H 0.13 1.13 7.99 -2.39 -0.02 1.11 16 33 H 0.09 1.16 8.14 -2.39 -0.02 1.15 16 34 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.09 0.60 8.06 -2.39 -0.02 0.58 16 36 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 40 H 0.43 4.26 9.10 -74.06 -0.67 3.59 16 Total: -1.00 -89.23 338.86 2.42 -86.81 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -0.23 Total: 17.32 kcal Atomic # 6 Polarization: -7.15 SS G_CDS: 3.54 Total: -3.61 kcal Atomic # 7 Polarization: -84.21 SS G_CDS: -1.26 Total: -85.47 kcal Atomic # 8 Polarization: -67.44 SS G_CDS: -1.69 Total: -69.13 kcal Atomic # 14 Polarization: 52.02 SS G_CDS: 2.05 Total: 54.08 kcal Total: -89.23 2.42 -86.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608180626.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.792 kcal (2) G-P(sol) polarization free energy of solvation -89.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -226.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -223.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds