Wall clock time and date at job start Tue Mar 31 2020 05:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99736 * 2 1 4 4 H 1.48499 * 109.47147 * 270.00111 * 3 2 1 5 5 H 1.48493 * 109.47378 * 30.00334 * 3 2 1 6 6 H 1.48502 * 109.46875 * 150.00793 * 3 2 1 7 7 C 1.37875 * 120.00121 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99932 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00196 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47254 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.46875 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00237 * 0.02562 * 11 10 9 13 13 N 1.34781 * 119.99640 * 180.02562 * 11 10 9 14 14 C 1.46497 * 119.99644 * 180.02562 * 13 11 10 15 15 H 1.08997 * 109.47471 * 35.00065 * 14 13 11 16 16 C 1.53003 * 109.47133 * 154.99674 * 14 13 11 17 17 C 1.53004 * 109.47080 * 295.00068 * 16 14 13 18 18 H 1.09003 * 110.33064 * 307.24534 * 17 16 14 19 19 C 1.54479 * 110.36947 * 184.99998 * 17 16 14 20 20 C 1.54509 * 104.06041 * 217.18853 * 19 17 16 21 21 C 1.54484 * 104.06247 * 359.97438 * 20 19 17 22 22 O 1.44417 * 110.37397 * 69.61667 * 17 16 14 23 23 C 1.50700 * 109.47128 * 274.99517 * 14 13 11 24 24 O 1.20822 * 119.99958 * 0.02562 * 23 14 13 25 25 O 1.34234 * 120.00068 * 180.02562 * 23 14 13 26 26 H 0.97005 * 120.00304 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.46634 * 60.00033 * 9 7 2 28 28 H 1.09002 * 109.46851 * 300.00331 * 9 7 2 29 29 H 1.09000 * 109.46748 * 60.00117 * 10 9 7 30 30 H 1.08990 * 109.47399 * 300.00324 * 10 9 7 31 31 H 0.96994 * 120.00238 * 359.97438 * 13 11 10 32 32 H 1.09005 * 109.47015 * 55.00132 * 16 14 13 33 33 H 1.08996 * 109.47660 * 174.99635 * 16 14 13 34 34 H 1.08999 * 110.51436 * 335.82969 * 19 17 16 35 35 H 1.09001 * 110.51542 * 98.54586 * 19 17 16 36 36 H 1.09005 * 110.51367 * 118.64585 * 20 19 17 37 37 H 1.09003 * 110.51466 * 241.22229 * 20 19 17 38 38 H 1.09001 * 110.36860 * 142.81024 * 21 20 19 39 39 H 1.09000 * 110.37018 * 265.03639 * 21 20 19 40 40 H 0.96698 * 117.00153 * 179.97438 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 6 5.5285 -2.6364 -0.0009 12 8 6.1349 -1.5861 -0.0005 13 7 6.2024 -3.8037 -0.0014 14 6 7.6674 -3.8036 -0.0007 15 1 8.0305 -2.9622 0.5893 16 6 8.1772 -5.1113 0.6084 17 6 7.7718 -5.1795 2.0822 18 1 8.0900 -4.2774 2.6047 19 6 8.3822 -6.4315 2.7503 20 6 7.2821 -6.9118 3.7232 21 6 6.1375 -5.8928 3.5282 22 8 6.3436 -5.3560 2.2031 23 6 8.1703 -3.6790 -1.4159 24 8 7.3856 -3.5981 -2.3310 25 8 9.4902 -3.6580 -1.6597 26 1 -0.4851 0.8401 0.0004 27 1 3.8751 -0.6804 0.8889 28 1 3.8745 -0.6799 -0.8911 29 1 3.6579 -3.1505 -0.8908 30 1 3.6586 -3.1502 0.8891 31 1 5.7175 -4.6437 -0.0013 32 1 7.7428 -5.9553 0.0726 33 1 9.2635 -5.1503 0.5282 34 1 8.5935 -7.1978 2.0045 35 1 9.2879 -6.1694 3.2973 36 1 6.9496 -7.9155 3.4584 37 1 7.6447 -6.8893 4.7509 38 1 5.1706 -6.3922 3.5888 39 1 6.2027 -5.1015 4.2751 40 1 9.7647 -3.5770 -2.5834 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608180627.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:30 Heat of formation + Delta-G solvation = -187.052231 kcal Electronic energy + Delta-G solvation = -23132.214058 eV Core-core repulsion = 19525.572420 eV Total energy + Delta-G solvation = -3606.641638 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.72510 -39.59912 -38.87827 -36.20289 -35.32844 -33.39659 -32.54343 -31.86102 -31.04041 -28.63228 -25.94832 -24.86489 -22.43549 -21.79723 -21.24639 -20.69578 -19.63655 -18.20269 -17.26893 -17.01471 -16.68598 -16.24954 -15.91421 -15.60926 -15.42608 -15.22088 -14.60959 -14.04005 -14.00584 -13.40474 -13.21212 -13.10984 -12.58553 -12.49052 -12.42961 -12.06462 -11.92985 -11.64028 -11.44629 -11.38742 -11.32013 -10.96429 -10.89885 -10.59306 -10.07855 -9.98263 -9.96362 -9.72405 -9.22272 -9.09875 -8.96392 -8.44132 -5.96658 -3.94587 2.14330 2.66161 3.27731 3.43037 3.48890 3.51117 3.60504 3.64018 4.19643 4.27320 4.56999 4.58434 4.61030 4.75412 4.86022 5.03576 5.10354 5.20453 5.32609 5.38643 5.39070 5.43675 5.51712 5.59486 5.66117 5.72435 5.75156 6.20864 6.23413 6.39712 6.55435 6.60678 6.80884 7.45446 7.52593 7.80891 7.82579 7.87323 8.57244 8.71282 9.07135 9.66792 11.16303 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.016077 B = 0.004510 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.155298 B = 6207.243586 C = 7469.258639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.069 3.931 3 Si 0.877 3.123 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.261 1.261 7 C -0.522 4.522 8 H 0.073 0.927 9 C 0.002 3.998 10 C -0.118 4.118 11 C 0.521 3.479 12 O -0.544 6.544 13 N -0.708 5.708 14 C 0.161 3.839 15 H 0.124 0.876 16 C -0.115 4.115 17 C 0.076 3.924 18 H 0.075 0.925 19 C -0.150 4.150 20 C -0.156 4.156 21 C 0.044 3.956 22 O -0.361 6.361 23 C 0.461 3.539 24 O -0.497 6.497 25 O -0.520 6.520 26 H 0.262 0.738 27 H 0.023 0.977 28 H 0.018 0.982 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.410 0.590 32 H 0.085 0.915 33 H 0.104 0.896 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.093 0.907 39 H 0.060 0.940 40 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.442 -16.664 5.657 27.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.132 4.132 3 Si 0.704 3.296 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.186 1.186 7 C -0.560 4.560 8 H 0.091 0.909 9 C -0.036 4.036 10 C -0.158 4.158 11 C 0.311 3.689 12 O -0.420 6.420 13 N -0.363 5.363 14 C 0.053 3.947 15 H 0.141 0.859 16 C -0.153 4.153 17 C 0.018 3.982 18 H 0.093 0.907 19 C -0.188 4.188 20 C -0.193 4.193 21 C -0.033 4.033 22 O -0.280 6.280 23 C 0.300 3.700 24 O -0.383 6.383 25 O -0.332 6.332 26 H 0.072 0.928 27 H 0.041 0.959 28 H 0.037 0.963 29 H 0.105 0.895 30 H 0.107 0.893 31 H 0.246 0.754 32 H 0.103 0.897 33 H 0.123 0.877 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.112 0.888 39 H 0.079 0.921 40 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 21.190 -15.735 5.647 26.991 hybrid contribution 0.489 0.483 -0.564 0.889 sum 21.679 -15.252 5.083 26.990 Atomic orbital electron populations 1.69918 1.06270 1.26863 1.51370 1.24960 0.94690 0.99166 0.94415 0.86801 0.80603 0.83444 0.78733 1.20281 1.21497 1.18560 1.21127 0.89307 0.94562 1.50972 0.90896 1.19370 0.96375 0.90300 0.97571 1.21625 0.87543 1.03149 1.03501 1.21565 0.91756 0.82461 0.73133 1.90635 1.70778 1.31563 1.49038 1.45872 1.03560 1.10328 1.76520 1.20271 0.83893 1.01420 0.89133 0.85886 1.21952 1.02540 0.95985 0.94839 1.22973 0.82387 0.97774 0.95056 0.90740 1.22981 0.98912 0.97881 0.99000 1.22942 0.96028 1.00316 1.00048 1.23406 0.99197 0.95358 0.85312 1.89188 1.21774 1.84799 1.32241 1.24317 0.79964 0.72227 0.93471 1.90749 1.56837 1.44149 1.46550 1.84509 1.26479 1.85550 1.36654 0.92799 0.95865 0.96341 0.89538 0.89325 0.75353 0.89676 0.87733 0.90465 0.90405 0.90701 0.90661 0.88850 0.92143 0.73382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.67 13.96 55.43 0.77 -27.90 16 2 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 3 Si 0.88 23.26 27.47 -169.99 -4.67 18.59 16 4 H -0.28 -7.27 7.11 56.52 0.40 -6.87 16 5 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 6 H -0.26 -6.89 6.54 56.52 0.37 -6.52 16 7 C -0.52 -15.44 9.66 -34.44 -0.33 -15.77 16 8 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16 9 C 0.00 0.05 3.33 -27.88 -0.09 -0.05 16 10 C -0.12 -2.47 5.64 -27.88 -0.16 -2.63 16 11 C 0.52 10.22 7.66 -10.98 -0.08 10.14 16 12 O -0.54 -12.59 15.65 5.56 0.09 -12.50 16 13 N -0.71 -10.43 3.58 -54.93 -0.20 -10.63 16 14 C 0.16 1.96 2.48 -69.08 -0.17 1.79 16 15 H 0.12 1.59 7.58 -51.93 -0.39 1.20 16 16 C -0.12 -0.92 4.42 -26.73 -0.12 -1.03 16 17 C 0.08 0.62 3.23 -25.95 -0.08 0.54 16 18 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 19 C -0.15 -0.89 6.63 -25.16 -0.17 -1.06 16 20 C -0.16 -0.95 7.09 -25.16 -0.18 -1.13 16 21 C 0.04 0.36 7.63 37.94 0.29 0.65 16 22 O -0.36 -3.77 9.46 -35.23 -0.33 -4.10 16 23 C 0.46 6.13 7.66 36.01 0.28 6.41 16 24 O -0.50 -8.68 17.08 -18.75 -0.32 -9.00 16 25 O -0.52 -4.92 13.23 -39.27 -0.52 -5.44 16 26 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 27 H 0.02 0.62 7.16 -51.93 -0.37 0.25 16 28 H 0.02 0.50 7.53 -51.93 -0.39 0.11 16 29 H 0.09 1.73 8.14 -51.93 -0.42 1.31 16 30 H 0.09 1.70 8.14 -51.93 -0.42 1.28 16 31 H 0.41 5.30 7.75 -40.82 -0.32 4.98 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.10 0.61 7.99 -51.93 -0.42 0.20 16 34 H 0.08 0.41 7.87 -51.93 -0.41 0.00 16 35 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.41 2.31 9.10 45.56 0.41 2.73 16 LS Contribution 336.63 15.07 5.07 5.07 Total: -1.00 -38.16 336.63 -6.30 -44.45 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -5.27 Total: 1.60 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: -0.92 Total: -0.15 kcal Atomic # 7 Polarization: -39.10 SS G_CDS: 0.58 Total: -38.53 kcal Atomic # 8 Polarization: -29.95 SS G_CDS: -1.09 Total: -31.04 kcal Atomic # 14 Polarization: 23.26 SS G_CDS: -4.67 Total: 18.59 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -38.16 -6.30 -44.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608180627.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.602 kcal (2) G-P(sol) polarization free energy of solvation -38.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds