Wall clock time and date at job start Tue Mar 31 2020 05:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99736 * 2 1 4 4 H 1.48499 * 109.47147 * 270.00111 * 3 2 1 5 5 H 1.48493 * 109.47378 * 30.00334 * 3 2 1 6 6 H 1.48502 * 109.46875 * 150.00793 * 3 2 1 7 7 C 1.37875 * 120.00121 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99932 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00196 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47254 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.46875 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00237 * 0.02562 * 11 10 9 13 13 N 1.34781 * 119.99640 * 180.02562 * 11 10 9 14 14 C 1.46497 * 119.99644 * 180.02562 * 13 11 10 15 15 H 1.08997 * 109.47471 * 35.00065 * 14 13 11 16 16 C 1.53003 * 109.47133 * 154.99674 * 14 13 11 17 17 C 1.53004 * 109.47080 * 295.00068 * 16 14 13 18 18 H 1.09003 * 110.33064 * 307.24534 * 17 16 14 19 19 C 1.54479 * 110.36947 * 184.99998 * 17 16 14 20 20 C 1.54509 * 104.06041 * 217.18853 * 19 17 16 21 21 C 1.54484 * 104.06247 * 359.97438 * 20 19 17 22 22 O 1.44417 * 110.37397 * 69.61667 * 17 16 14 23 23 C 1.50700 * 109.47128 * 274.99517 * 14 13 11 24 24 O 1.20822 * 119.99958 * 0.02562 * 23 14 13 25 25 O 1.34234 * 120.00068 * 180.02562 * 23 14 13 26 26 H 0.97005 * 120.00304 * 359.97438 * 1 2 3 27 27 H 1.08998 * 109.46634 * 60.00033 * 9 7 2 28 28 H 1.09002 * 109.46851 * 300.00331 * 9 7 2 29 29 H 1.09000 * 109.46748 * 60.00117 * 10 9 7 30 30 H 1.08990 * 109.47399 * 300.00324 * 10 9 7 31 31 H 0.96994 * 120.00238 * 359.97438 * 13 11 10 32 32 H 1.09005 * 109.47015 * 55.00132 * 16 14 13 33 33 H 1.08996 * 109.47660 * 174.99635 * 16 14 13 34 34 H 1.08999 * 110.51436 * 335.82969 * 19 17 16 35 35 H 1.09001 * 110.51542 * 98.54586 * 19 17 16 36 36 H 1.09005 * 110.51367 * 118.64585 * 20 19 17 37 37 H 1.09003 * 110.51466 * 241.22229 * 20 19 17 38 38 H 1.09001 * 110.36860 * 142.81024 * 21 20 19 39 39 H 1.09000 * 110.37018 * 265.03639 * 21 20 19 40 40 H 0.96698 * 117.00153 * 179.97438 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 6 5.5285 -2.6364 -0.0009 12 8 6.1349 -1.5861 -0.0005 13 7 6.2024 -3.8037 -0.0014 14 6 7.6674 -3.8036 -0.0007 15 1 8.0305 -2.9622 0.5893 16 6 8.1772 -5.1113 0.6084 17 6 7.7718 -5.1795 2.0822 18 1 8.0900 -4.2774 2.6047 19 6 8.3822 -6.4315 2.7503 20 6 7.2821 -6.9118 3.7232 21 6 6.1375 -5.8928 3.5282 22 8 6.3436 -5.3560 2.2031 23 6 8.1703 -3.6790 -1.4159 24 8 7.3856 -3.5981 -2.3310 25 8 9.4902 -3.6580 -1.6597 26 1 -0.4851 0.8401 0.0004 27 1 3.8751 -0.6804 0.8889 28 1 3.8745 -0.6799 -0.8911 29 1 3.6579 -3.1505 -0.8908 30 1 3.6586 -3.1502 0.8891 31 1 5.7175 -4.6437 -0.0013 32 1 7.7428 -5.9553 0.0726 33 1 9.2635 -5.1503 0.5282 34 1 8.5935 -7.1978 2.0045 35 1 9.2879 -6.1694 3.2973 36 1 6.9496 -7.9155 3.4584 37 1 7.6447 -6.8893 4.7509 38 1 5.1706 -6.3922 3.5888 39 1 6.2027 -5.1015 4.2751 40 1 9.7647 -3.5770 -2.5834 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608180627.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:29 Heat of formation + Delta-G solvation = -216.058905 kcal Electronic energy + Delta-G solvation = -23133.471882 eV Core-core repulsion = 19525.572420 eV Total energy + Delta-G solvation = -3607.899462 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.79927 -40.41333 -40.14933 -37.20269 -36.46731 -35.53416 -33.58165 -33.08848 -32.45144 -29.61343 -27.78793 -25.66497 -23.70743 -22.86853 -21.94619 -21.79660 -21.22619 -19.29407 -19.13132 -18.07396 -17.72249 -17.50050 -16.84257 -16.61435 -16.37631 -16.24085 -16.20367 -16.00557 -14.90563 -14.60015 -14.56114 -14.48188 -14.05394 -13.83141 -13.40772 -13.24037 -12.92542 -12.76193 -12.59239 -12.49201 -12.24084 -12.08389 -12.00789 -11.97192 -11.77973 -11.62062 -11.41376 -11.40015 -10.85143 -10.78784 -10.64585 -10.25420 -8.31971 -6.34831 1.11245 1.32518 1.33355 1.48044 1.49300 1.94618 2.34632 2.38055 2.99803 3.03389 3.48326 3.72919 3.92535 3.97257 4.06023 4.14192 4.22395 4.35339 4.40861 4.42856 4.48413 4.59778 4.72181 4.81618 4.94892 4.96898 5.01195 5.06075 5.21308 5.27543 5.28341 5.38808 5.43215 5.55692 5.60063 6.00214 6.23274 6.51289 6.70702 6.91763 7.24423 7.30248 8.83884 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.016077 B = 0.004510 C = 0.003748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.155298 B = 6207.243586 C = 7469.258639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.015 3.985 3 Si 0.938 3.062 4 H -0.271 1.271 5 H -0.274 1.274 6 H -0.261 1.261 7 C -0.530 4.530 8 H 0.049 0.951 9 C 0.008 3.992 10 C -0.114 4.114 11 C 0.524 3.476 12 O -0.585 6.585 13 N -0.690 5.690 14 C 0.155 3.845 15 H 0.118 0.882 16 C -0.102 4.102 17 C 0.069 3.931 18 H 0.069 0.931 19 C -0.143 4.143 20 C -0.151 4.151 21 C 0.035 3.965 22 O -0.389 6.389 23 C 0.468 3.532 24 O -0.546 6.546 25 O -0.502 6.502 26 H 0.268 0.732 27 H 0.013 0.987 28 H 0.004 0.996 29 H 0.094 0.906 30 H 0.104 0.896 31 H 0.420 0.580 32 H 0.093 0.907 33 H 0.134 0.866 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.055 0.945 40 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.960 -17.734 6.112 30.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.183 4.183 3 Si 0.763 3.237 4 H -0.196 1.196 5 H -0.199 1.199 6 H -0.186 1.186 7 C -0.567 4.567 8 H 0.068 0.932 9 C -0.030 4.030 10 C -0.154 4.154 11 C 0.313 3.687 12 O -0.465 6.465 13 N -0.343 5.343 14 C 0.048 3.952 15 H 0.135 0.865 16 C -0.140 4.140 17 C 0.011 3.989 18 H 0.087 0.913 19 C -0.180 4.180 20 C -0.188 4.188 21 C -0.041 4.041 22 O -0.308 6.308 23 C 0.309 3.691 24 O -0.435 6.435 25 O -0.315 6.315 26 H 0.077 0.923 27 H 0.031 0.969 28 H 0.022 0.978 29 H 0.113 0.887 30 H 0.122 0.878 31 H 0.258 0.742 32 H 0.112 0.888 33 H 0.152 0.848 34 H 0.107 0.893 35 H 0.112 0.888 36 H 0.098 0.902 37 H 0.105 0.895 38 H 0.111 0.889 39 H 0.073 0.927 40 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges 23.755 -16.864 6.106 29.765 hybrid contribution -0.261 0.728 -0.706 1.047 sum 23.494 -16.136 5.399 29.009 Atomic orbital electron populations 1.70024 1.07735 1.28117 1.52482 1.25785 0.95506 1.02785 0.94175 0.85830 0.79296 0.79518 0.79080 1.19614 1.19942 1.18560 1.21412 0.91134 0.93784 1.50416 0.93246 1.19200 0.94074 0.93511 0.96230 1.21448 0.89226 1.00014 1.04725 1.21150 0.91136 0.83209 0.73169 1.90614 1.71253 1.33160 1.51444 1.45605 1.05136 1.09143 1.74434 1.20581 0.81865 1.03748 0.89053 0.86456 1.21996 1.04128 0.93484 0.94368 1.23110 0.81681 0.98832 0.95252 0.91341 1.22963 0.99115 0.96838 0.99111 1.22923 0.95211 0.99784 1.00903 1.23525 1.00296 0.95850 0.84464 1.89147 1.23281 1.85170 1.33247 1.24372 0.80645 0.70922 0.93153 1.90744 1.58203 1.46655 1.47918 1.84452 1.24108 1.84519 1.38460 0.92319 0.96860 0.97775 0.88748 0.87766 0.74176 0.88839 0.84766 0.89337 0.88833 0.90166 0.89514 0.88889 0.92706 0.71112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.47 13.96 21.45 0.30 -60.17 16 2 C 0.02 0.93 5.47 84.65 0.46 1.39 16 3 Si 0.94 48.28 27.47 68.60 1.88 50.16 16 4 H -0.27 -13.59 7.11 99.48 0.71 -12.88 16 5 H -0.27 -13.36 7.11 99.48 0.71 -12.65 16 6 H -0.26 -13.36 6.54 99.48 0.65 -12.71 16 7 C -0.53 -31.91 9.66 25.60 0.25 -31.66 16 8 H 0.05 3.13 7.99 -2.91 -0.02 3.11 16 9 C 0.01 0.41 3.33 29.85 0.10 0.51 16 10 C -0.11 -4.80 5.64 29.85 0.17 -4.63 16 11 C 0.52 20.48 7.66 87.66 0.67 21.15 16 12 O -0.58 -27.19 15.65 -3.03 -0.05 -27.23 16 13 N -0.69 -19.70 3.58 -446.10 -1.60 -21.30 16 14 C 0.16 3.52 2.48 44.25 0.11 3.63 16 15 H 0.12 2.89 7.58 -2.39 -0.02 2.87 16 16 C -0.10 -1.33 4.42 30.60 0.14 -1.20 16 17 C 0.07 0.97 3.23 31.10 0.10 1.07 16 18 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 19 C -0.14 -1.23 6.63 31.61 0.21 -1.02 16 20 C -0.15 -1.48 7.09 31.61 0.22 -1.25 16 21 C 0.04 0.54 7.63 72.49 0.55 1.10 16 22 O -0.39 -7.61 9.46 -148.98 -1.41 -9.02 16 23 C 0.47 11.65 7.66 71.24 0.55 12.19 16 24 O -0.55 -18.63 17.08 21.98 0.38 -18.25 16 25 O -0.50 -8.09 13.23 -51.46 -0.68 -8.77 16 26 H 0.27 16.00 8.31 -92.70 -0.77 15.23 16 27 H 0.01 0.71 7.16 -2.39 -0.02 0.70 16 28 H 0.00 0.21 7.53 -2.39 -0.02 0.20 16 29 H 0.09 3.78 8.14 -2.39 -0.02 3.76 16 30 H 0.10 3.99 8.14 -2.39 -0.02 3.97 16 31 H 0.42 10.36 7.75 -92.71 -0.72 9.64 16 32 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 33 H 0.13 1.00 7.99 -2.39 -0.02 0.99 16 34 H 0.09 0.59 7.87 -2.39 -0.02 0.58 16 35 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.08 0.71 8.14 -2.38 -0.02 0.69 16 37 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.43 3.65 9.10 -74.06 -0.67 2.97 16 Total: -1.00 -83.33 336.63 1.96 -81.37 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -0.39 Total: 11.94 kcal Atomic # 6 Polarization: -2.25 SS G_CDS: 3.53 Total: 1.28 kcal Atomic # 7 Polarization: -80.17 SS G_CDS: -1.30 Total: -81.47 kcal Atomic # 8 Polarization: -61.51 SS G_CDS: -1.76 Total: -63.28 kcal Atomic # 14 Polarization: 48.28 SS G_CDS: 1.88 Total: 50.16 kcal Total: -83.33 1.96 -81.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608180627.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.692 kcal (2) G-P(sol) polarization free energy of solvation -83.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -218.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -216.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds