Wall clock time and date at job start Tue Mar 31 2020 05:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48494 * 109.47225 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.46866 * 120.00450 * 3 2 1 6 6 H 1.48498 * 109.47306 * 239.99734 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3 8 8 H 1.08002 * 120.00484 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00075 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47525 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47001 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00475 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99534 * 179.97438 * 11 10 9 14 14 C 1.46505 * 119.99724 * 180.02562 * 13 11 10 15 15 H 1.09000 * 109.46989 * 324.99747 * 14 13 11 16 16 C 1.52998 * 109.47085 * 205.00369 * 14 13 11 17 17 C 1.53004 * 109.47475 * 64.99994 * 16 14 13 18 18 H 1.08998 * 109.81842 * 305.56670 * 17 16 14 19 19 C 1.54375 * 109.83114 * 184.59029 * 17 16 14 20 20 C 1.55311 * 102.25186 * 219.12596 * 19 17 16 21 21 C 1.54951 * 100.93881 * 34.13576 * 20 19 17 22 22 O 1.43238 * 109.83033 * 66.45370 * 17 16 14 23 23 C 1.50695 * 109.47124 * 85.00315 * 14 13 11 24 24 O 1.20829 * 120.00112 * 359.97438 * 23 14 13 25 25 O 1.34228 * 120.00032 * 180.02562 * 23 14 13 26 26 H 0.97005 * 119.99656 * 179.97438 * 1 2 3 27 27 H 1.09009 * 109.46564 * 300.00329 * 9 7 2 28 28 H 1.08998 * 109.47358 * 59.99308 * 9 7 2 29 29 H 1.08995 * 109.46838 * 299.99933 * 10 9 7 30 30 H 1.09001 * 109.47054 * 59.99908 * 10 9 7 31 31 H 0.97000 * 120.00483 * 0.02562 * 13 11 10 32 32 H 1.09000 * 109.47070 * 184.99947 * 16 14 13 33 33 H 1.09001 * 109.47293 * 305.00106 * 16 14 13 34 34 H 1.09005 * 110.85080 * 337.31750 * 19 17 16 35 35 H 1.09006 * 110.85096 * 100.94095 * 19 17 16 36 36 H 1.08996 * 111.12712 * 276.21792 * 20 19 17 37 37 H 1.09002 * 111.16243 * 152.06226 * 20 19 17 38 38 H 1.09002 * 110.30479 * 204.64166 * 21 20 19 39 39 H 1.08998 * 110.39582 * 82.51064 * 21 20 19 40 40 H 0.96696 * 117.00128 * 179.97438 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1028 1.6966 -1.2124 7 6 2.0046 -1.1939 0.0056 8 1 3.0846 -1.1939 0.0052 9 6 1.2512 -2.4991 0.0123 10 6 2.2455 -3.6620 0.0183 11 6 1.4920 -4.9670 0.0256 12 8 0.2792 -4.9672 0.0256 13 7 2.1660 -6.1342 0.0312 14 6 1.4335 -7.4030 0.0378 15 1 0.5230 -7.2938 0.6270 16 6 2.3109 -8.4952 0.6526 17 6 2.5722 -8.1710 2.1249 18 1 2.9916 -7.1689 2.2139 19 6 3.5499 -9.2050 2.7234 20 6 2.9636 -9.4293 4.1440 21 6 1.4469 -9.2821 3.8628 22 8 1.3486 -8.2533 2.8651 23 6 1.0747 -7.7832 -1.3756 24 8 1.3973 -7.0675 -2.2942 25 8 0.3959 -8.9163 -1.6140 26 1 -0.4850 -0.8401 -0.0004 27 1 0.6248 -2.5524 0.9029 28 1 0.6241 -2.5613 -0.8770 29 1 2.8721 -3.6088 -0.8720 30 1 2.8721 -3.5996 0.9080 31 1 3.1360 -6.1342 0.0309 32 1 1.8016 -9.4559 0.5770 33 1 3.2593 -8.5436 0.1175 34 1 3.5362 -10.1305 2.1475 35 1 4.5591 -8.7971 2.7803 36 1 3.3107 -8.6635 4.8376 37 1 3.1994 -10.4271 4.5140 38 1 0.9216 -8.9815 4.7693 39 1 1.0385 -10.2183 3.4823 40 1 0.1882 -9.1178 -2.5367 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608180628.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:32 Heat of formation + Delta-G solvation = -195.108875 kcal Electronic energy + Delta-G solvation = -22908.271842 eV Core-core repulsion = 19301.280842 eV Total energy + Delta-G solvation = -3606.991000 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.74761 -39.67305 -38.93391 -36.19043 -35.36616 -33.72857 -32.53656 -31.94413 -30.67024 -28.61169 -25.33167 -24.80011 -22.42977 -22.05127 -21.39009 -20.74306 -19.97859 -18.12953 -17.33672 -17.10728 -16.89847 -16.17535 -16.06922 -15.76152 -15.48934 -14.70249 -14.51083 -13.96589 -13.76552 -13.65150 -13.43258 -13.34663 -12.53364 -12.38514 -12.14492 -12.11585 -11.96608 -11.63530 -11.52534 -11.42459 -11.26468 -11.19257 -10.78906 -10.61003 -10.10331 -10.06291 -9.88873 -9.81021 -9.34735 -9.06361 -8.48896 -8.23818 -6.27172 -3.96975 2.16563 2.66375 3.22986 3.47186 3.49682 3.51142 3.52635 3.69892 4.10875 4.28535 4.48334 4.60765 4.61848 4.75101 4.82759 4.93744 5.14862 5.26321 5.31158 5.35967 5.40609 5.42390 5.50652 5.52397 5.65437 5.70203 5.85434 6.13660 6.17047 6.42071 6.44714 6.76624 6.78101 7.57180 7.62887 7.70293 7.84327 8.24275 8.54030 8.65033 8.96722 9.76717 11.13837 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.017688 B = 0.003803 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.652933 B = 7361.035165 C = 8344.789350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.015 3.985 3 Si 1.071 2.929 4 H -0.283 1.283 5 H -0.288 1.288 6 H -0.288 1.288 7 C -0.608 4.608 8 H 0.049 0.951 9 C 0.024 3.976 10 C -0.120 4.120 11 C 0.518 3.482 12 O -0.530 6.530 13 N -0.722 5.722 14 C 0.162 3.838 15 H 0.133 0.867 16 C -0.130 4.130 17 C 0.080 3.920 18 H 0.089 0.911 19 C -0.151 4.151 20 C -0.157 4.157 21 C 0.048 3.952 22 O -0.371 6.371 23 C 0.463 3.537 24 O -0.501 6.501 25 O -0.518 6.518 26 H 0.272 0.728 27 H 0.015 0.985 28 H 0.015 0.985 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.403 0.597 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.060 0.940 40 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.735 -24.907 5.382 26.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.190 4.190 3 Si 0.899 3.101 4 H -0.208 1.208 5 H -0.215 1.215 6 H -0.215 1.215 7 C -0.646 4.646 8 H 0.067 0.933 9 C -0.014 4.014 10 C -0.160 4.160 11 C 0.308 3.692 12 O -0.405 6.405 13 N -0.377 5.377 14 C 0.054 3.946 15 H 0.150 0.850 16 C -0.168 4.168 17 C 0.023 3.977 18 H 0.107 0.893 19 C -0.189 4.189 20 C -0.195 4.195 21 C -0.028 4.028 22 O -0.290 6.290 23 C 0.302 3.698 24 O -0.387 6.387 25 O -0.329 6.329 26 H 0.083 0.917 27 H 0.033 0.967 28 H 0.033 0.967 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.237 0.763 32 H 0.114 0.886 33 H 0.103 0.897 34 H 0.098 0.902 35 H 0.103 0.897 36 H 0.098 0.902 37 H 0.101 0.899 38 H 0.103 0.897 39 H 0.078 0.922 40 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 7.634 -22.805 5.494 24.669 hybrid contribution 0.735 -2.087 -0.761 2.340 sum 8.369 -24.892 4.732 26.684 Atomic orbital electron populations 1.70731 1.06911 1.31000 1.46038 1.25846 0.96581 1.02664 0.93859 0.83533 0.74833 0.75370 0.76376 1.20791 1.21489 1.21500 1.22024 0.94149 0.91992 1.56459 0.93256 1.19026 0.93852 0.91120 0.97368 1.21714 1.00469 0.90987 1.02844 1.21629 0.88666 0.85558 0.73391 1.90666 1.14535 1.87466 1.47801 1.46004 1.09982 1.04116 1.77622 1.20283 0.99608 0.85660 0.89076 0.84973 1.22239 1.00351 0.98372 0.95877 1.22759 0.85013 0.99905 0.90070 0.89328 1.23184 0.99866 0.99676 0.96130 1.23273 0.95804 1.03083 0.97301 1.23398 0.95821 0.91590 0.92001 1.88528 1.35345 1.56037 1.49116 1.24303 0.74221 0.77862 0.93421 1.90744 1.50750 1.50867 1.46318 1.84523 1.69737 1.42038 1.36646 0.91726 0.96653 0.96711 0.89817 0.89902 0.76263 0.88586 0.89720 0.90222 0.89696 0.90180 0.89926 0.89657 0.92184 0.73445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -29.44 13.65 55.43 0.76 -28.68 16 2 C 0.01 0.44 5.46 -17.82 -0.10 0.35 16 3 Si 1.07 25.94 29.90 -169.99 -5.08 20.86 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.61 -17.92 9.11 -34.44 -0.31 -18.23 16 8 H 0.05 1.38 7.74 -52.49 -0.41 0.97 16 9 C 0.02 0.66 3.57 -27.88 -0.10 0.56 16 10 C -0.12 -2.56 5.64 -27.88 -0.16 -2.72 16 11 C 0.52 10.47 7.66 -10.99 -0.08 10.39 16 12 O -0.53 -13.00 15.65 5.55 0.09 -12.91 16 13 N -0.72 -10.58 3.98 -54.93 -0.22 -10.80 16 14 C 0.16 2.13 2.44 -69.08 -0.17 1.97 16 15 H 0.13 2.05 7.20 -51.93 -0.37 1.68 16 16 C -0.13 -1.13 4.29 -26.73 -0.11 -1.25 16 17 C 0.08 0.72 3.46 -26.01 -0.09 0.63 16 18 H 0.09 0.85 7.63 -51.93 -0.40 0.46 16 19 C -0.15 -0.91 6.54 -24.78 -0.16 -1.08 16 20 C -0.16 -0.95 7.16 -24.48 -0.18 -1.13 16 21 C 0.05 0.39 7.78 38.19 0.30 0.68 16 22 O -0.37 -4.26 10.55 -35.23 -0.37 -4.63 16 23 C 0.46 6.59 7.66 36.00 0.28 6.87 16 24 O -0.50 -9.05 17.08 -18.75 -0.32 -9.37 16 25 O -0.52 -5.52 13.23 -39.25 -0.52 -6.03 16 26 H 0.27 8.95 7.22 -40.82 -0.29 8.66 16 27 H 0.02 0.45 7.97 -51.92 -0.41 0.04 16 28 H 0.01 0.44 7.96 -51.93 -0.41 0.03 16 29 H 0.08 1.68 8.14 -51.93 -0.42 1.26 16 30 H 0.08 1.58 8.14 -51.93 -0.42 1.15 16 31 H 0.40 4.52 8.60 -40.82 -0.35 4.17 16 32 H 0.10 0.76 8.00 -51.93 -0.42 0.35 16 33 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.08 0.40 7.85 -51.93 -0.41 -0.01 16 35 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.41 2.69 9.10 45.56 0.41 3.10 16 LS Contribution 340.53 15.07 5.13 5.13 Total: -1.00 -39.38 340.53 -6.66 -46.04 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -5.24 Total: 3.35 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: -0.89 Total: -2.95 kcal Atomic # 7 Polarization: -40.02 SS G_CDS: 0.54 Total: -39.48 kcal Atomic # 8 Polarization: -31.82 SS G_CDS: -1.12 Total: -32.95 kcal Atomic # 14 Polarization: 25.94 SS G_CDS: -5.08 Total: 20.86 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -39.38 -6.66 -46.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608180628.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.071 kcal (2) G-P(sol) polarization free energy of solvation -39.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds