Wall clock time and date at job start Tue Mar 31 2020 05:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99579 * 2 1 4 4 H 1.48494 * 109.47225 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.46866 * 120.00450 * 3 2 1 6 6 H 1.48498 * 109.47306 * 239.99734 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.73118 * 2 1 3 8 8 H 1.08002 * 120.00484 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00075 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47525 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47001 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00475 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99534 * 179.97438 * 11 10 9 14 14 C 1.46505 * 119.99724 * 180.02562 * 13 11 10 15 15 H 1.09000 * 109.46989 * 324.99747 * 14 13 11 16 16 C 1.52998 * 109.47085 * 205.00369 * 14 13 11 17 17 C 1.53004 * 109.47475 * 64.99994 * 16 14 13 18 18 H 1.08998 * 109.81842 * 305.56670 * 17 16 14 19 19 C 1.54375 * 109.83114 * 184.59029 * 17 16 14 20 20 C 1.55311 * 102.25186 * 219.12596 * 19 17 16 21 21 C 1.54951 * 100.93881 * 34.13576 * 20 19 17 22 22 O 1.43238 * 109.83033 * 66.45370 * 17 16 14 23 23 C 1.50695 * 109.47124 * 85.00315 * 14 13 11 24 24 O 1.20829 * 120.00112 * 359.97438 * 23 14 13 25 25 O 1.34228 * 120.00032 * 180.02562 * 23 14 13 26 26 H 0.97005 * 119.99656 * 179.97438 * 1 2 3 27 27 H 1.09009 * 109.46564 * 300.00329 * 9 7 2 28 28 H 1.08998 * 109.47358 * 59.99308 * 9 7 2 29 29 H 1.08995 * 109.46838 * 299.99933 * 10 9 7 30 30 H 1.09001 * 109.47054 * 59.99908 * 10 9 7 31 31 H 0.97000 * 120.00483 * 0.02562 * 13 11 10 32 32 H 1.09000 * 109.47070 * 184.99947 * 16 14 13 33 33 H 1.09001 * 109.47293 * 305.00106 * 16 14 13 34 34 H 1.09005 * 110.85080 * 337.31750 * 19 17 16 35 35 H 1.09006 * 110.85096 * 100.94095 * 19 17 16 36 36 H 1.08996 * 111.12712 * 276.21792 * 20 19 17 37 37 H 1.09002 * 111.16243 * 152.06226 * 20 19 17 38 38 H 1.09002 * 110.30479 * 204.64166 * 21 20 19 39 39 H 1.08998 * 110.39582 * 82.51064 * 21 20 19 40 40 H 0.96696 * 117.00128 * 179.97438 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2840 2.7465 0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1028 1.6966 -1.2124 7 6 2.0046 -1.1939 0.0056 8 1 3.0846 -1.1939 0.0052 9 6 1.2512 -2.4991 0.0123 10 6 2.2455 -3.6620 0.0183 11 6 1.4920 -4.9670 0.0256 12 8 0.2792 -4.9672 0.0256 13 7 2.1660 -6.1342 0.0312 14 6 1.4335 -7.4030 0.0378 15 1 0.5230 -7.2938 0.6270 16 6 2.3109 -8.4952 0.6526 17 6 2.5722 -8.1710 2.1249 18 1 2.9916 -7.1689 2.2139 19 6 3.5499 -9.2050 2.7234 20 6 2.9636 -9.4293 4.1440 21 6 1.4469 -9.2821 3.8628 22 8 1.3486 -8.2533 2.8651 23 6 1.0747 -7.7832 -1.3756 24 8 1.3973 -7.0675 -2.2942 25 8 0.3959 -8.9163 -1.6140 26 1 -0.4850 -0.8401 -0.0004 27 1 0.6248 -2.5524 0.9029 28 1 0.6241 -2.5613 -0.8770 29 1 2.8721 -3.6088 -0.8720 30 1 2.8721 -3.5996 0.9080 31 1 3.1360 -6.1342 0.0309 32 1 1.8016 -9.4559 0.5770 33 1 3.2593 -8.5436 0.1175 34 1 3.5362 -10.1305 2.1475 35 1 4.5591 -8.7971 2.7803 36 1 3.3107 -8.6635 4.8376 37 1 3.1994 -10.4271 4.5140 38 1 0.9216 -8.9815 4.7693 39 1 1.0385 -10.2183 3.4823 40 1 0.1882 -9.1178 -2.5367 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608180628.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:31 Heat of formation + Delta-G solvation = -225.919320 kcal Electronic energy + Delta-G solvation = -22909.607883 eV Core-core repulsion = 19301.280842 eV Total energy + Delta-G solvation = -3608.327042 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.90538 -40.51932 -40.30335 -37.30008 -36.60909 -35.91814 -33.46928 -33.02659 -32.31747 -29.60481 -27.18401 -25.79940 -24.25988 -22.85788 -22.18678 -21.74516 -21.54951 -19.25161 -19.05917 -18.25934 -18.06067 -17.57263 -17.09401 -16.79665 -16.63259 -16.30659 -15.61350 -15.48239 -15.15744 -14.68863 -14.53268 -14.24591 -14.15690 -14.08212 -13.62206 -13.23168 -12.82368 -12.66727 -12.65537 -12.59244 -12.28742 -12.09670 -12.05049 -11.97802 -11.86342 -11.69757 -11.63931 -11.09558 -10.70913 -10.59407 -10.54261 -10.33792 -8.70202 -6.41979 1.03013 1.37565 1.54257 1.64923 1.82718 1.83598 2.27991 2.60633 2.90924 3.16752 3.47234 3.59821 3.84615 3.89519 4.00846 4.03293 4.18009 4.27269 4.31095 4.36793 4.40432 4.58610 4.74945 4.75499 4.85894 4.89008 4.96726 5.03014 5.09323 5.17210 5.29221 5.33099 5.35069 5.48042 5.92453 6.14307 6.16203 6.38064 6.50293 6.84812 7.14068 7.44640 8.69603 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.017688 B = 0.003803 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.652933 B = 7361.035165 C = 8344.789350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.046 4.046 3 Si 1.126 2.874 4 H -0.288 1.288 5 H -0.261 1.261 6 H -0.265 1.265 7 C -0.619 4.619 8 H 0.069 0.931 9 C 0.027 3.973 10 C -0.111 4.111 11 C 0.519 3.481 12 O -0.585 6.585 13 N -0.697 5.697 14 C 0.158 3.842 15 H 0.107 0.893 16 C -0.117 4.117 17 C 0.072 3.928 18 H 0.077 0.923 19 C -0.142 4.142 20 C -0.152 4.152 21 C 0.038 3.962 22 O -0.409 6.409 23 C 0.468 3.532 24 O -0.544 6.544 25 O -0.504 6.504 26 H 0.250 0.750 27 H -0.019 1.019 28 H -0.026 1.026 29 H 0.102 0.898 30 H 0.112 0.888 31 H 0.423 0.577 32 H 0.110 0.890 33 H 0.114 0.886 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.074 0.926 37 H 0.104 0.896 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.931 -26.449 5.691 29.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.243 4.243 3 Si 0.946 3.054 4 H -0.213 1.213 5 H -0.186 1.186 6 H -0.189 1.189 7 C -0.656 4.656 8 H 0.087 0.913 9 C -0.011 4.011 10 C -0.151 4.151 11 C 0.308 3.692 12 O -0.464 6.464 13 N -0.352 5.352 14 C 0.051 3.949 15 H 0.125 0.875 16 C -0.155 4.155 17 C 0.014 3.986 18 H 0.095 0.905 19 C -0.180 4.180 20 C -0.190 4.190 21 C -0.038 4.038 22 O -0.329 6.329 23 C 0.310 3.690 24 O -0.434 6.434 25 O -0.316 6.316 26 H 0.059 0.941 27 H 0.000 1.000 28 H -0.008 1.008 29 H 0.120 0.880 30 H 0.130 0.870 31 H 0.261 0.739 32 H 0.128 0.872 33 H 0.132 0.868 34 H 0.115 0.885 35 H 0.118 0.882 36 H 0.093 0.907 37 H 0.122 0.878 38 H 0.099 0.901 39 H 0.089 0.911 40 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges 10.884 -24.449 5.806 27.384 hybrid contribution -0.332 -1.744 -0.851 1.969 sum 10.552 -26.193 4.955 28.670 Atomic orbital electron populations 1.70898 1.08414 1.29648 1.48742 1.27729 0.96495 1.07543 0.92511 0.82856 0.73967 0.70189 0.78406 1.21337 1.18601 1.18941 1.22497 0.95274 0.92577 1.55300 0.91255 1.18864 0.94382 0.94001 0.93853 1.21510 0.99098 0.89383 1.05091 1.21376 0.87842 0.86832 0.73139 1.90649 1.16740 1.88296 1.50715 1.45625 1.10934 1.03333 1.75329 1.20463 0.99661 0.86010 0.88775 0.87535 1.22281 1.00768 0.96762 0.95665 1.22894 0.85099 1.00505 0.90066 0.90473 1.23183 0.99569 0.99456 0.95758 1.23268 0.94065 1.04165 0.97465 1.23593 0.97568 0.91263 0.91375 1.88500 1.36887 1.57341 1.50170 1.24356 0.73580 0.77974 0.93124 1.90736 1.52777 1.52344 1.47568 1.84470 1.68476 1.40173 1.38530 0.94068 1.00044 1.00777 0.87997 0.86973 0.73881 0.87184 0.86807 0.88480 0.88204 0.90681 0.87786 0.90053 0.91105 0.71095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -62.88 13.65 21.45 0.29 -62.59 16 2 C -0.05 -2.82 5.46 84.65 0.46 -2.36 16 3 Si 1.13 51.35 29.90 68.60 2.05 53.40 16 4 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 5 H -0.26 -10.73 7.11 99.48 0.71 -10.03 16 6 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 7 C -0.62 -36.67 9.11 25.60 0.23 -36.44 16 8 H 0.07 3.76 7.74 -2.91 -0.02 3.74 16 9 C 0.03 1.54 3.57 29.85 0.11 1.65 16 10 C -0.11 -4.73 5.64 29.85 0.17 -4.56 16 11 C 0.52 21.38 7.66 87.66 0.67 22.05 16 12 O -0.58 -30.25 15.65 -3.04 -0.05 -30.30 16 13 N -0.70 -19.90 3.98 -446.10 -1.78 -21.68 16 14 C 0.16 4.07 2.44 44.24 0.11 4.18 16 15 H 0.11 3.41 7.20 -2.39 -0.02 3.39 16 16 C -0.12 -1.74 4.29 30.59 0.13 -1.61 16 17 C 0.07 1.15 3.46 31.06 0.11 1.25 16 18 H 0.08 1.37 7.63 -2.39 -0.02 1.35 16 19 C -0.14 -1.24 6.54 31.86 0.21 -1.04 16 20 C -0.15 -1.47 7.16 32.06 0.23 -1.24 16 21 C 0.04 0.56 7.78 72.65 0.56 1.13 16 22 O -0.41 -9.20 10.55 -148.98 -1.57 -10.77 16 23 C 0.47 12.94 7.66 71.23 0.55 13.49 16 24 O -0.54 -19.51 17.08 21.96 0.37 -19.14 16 25 O -0.50 -9.85 13.23 -51.39 -0.68 -10.53 16 26 H 0.25 17.49 7.22 -92.70 -0.67 16.82 16 27 H -0.02 -1.20 7.97 -2.38 -0.02 -1.22 16 28 H -0.03 -1.71 7.96 -2.39 -0.02 -1.72 16 29 H 0.10 3.96 8.14 -2.39 -0.02 3.94 16 30 H 0.11 4.08 8.14 -2.39 -0.02 4.06 16 31 H 0.42 8.55 8.60 -92.71 -0.80 7.76 16 32 H 0.11 1.40 8.00 -2.39 -0.02 1.38 16 33 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.10 0.54 7.85 -2.38 -0.02 0.52 16 35 H 0.10 0.61 8.14 -2.38 -0.02 0.59 16 36 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.43 4.80 9.10 -74.06 -0.67 4.13 16 Total: -1.00 -90.71 340.53 1.87 -88.84 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -0.31 Total: 16.26 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: 3.54 Total: -3.49 kcal Atomic # 7 Polarization: -82.78 SS G_CDS: -1.48 Total: -84.26 kcal Atomic # 8 Polarization: -68.82 SS G_CDS: -1.92 Total: -70.74 kcal Atomic # 14 Polarization: 51.35 SS G_CDS: 2.05 Total: 53.40 kcal Total: -90.71 1.87 -88.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608180628.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.080 kcal (2) G-P(sol) polarization free energy of solvation -90.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -227.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -225.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds