Wall clock time and date at job start Tue Mar 31 2020 05:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48493 * 109.47326 * 90.00391 * 3 2 1 5 5 H 1.48506 * 109.46545 * 210.00141 * 3 2 1 6 6 H 1.48498 * 109.47210 * 329.99852 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99398 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46931 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47303 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99697 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00137 * 179.97438 * 11 10 9 14 14 C 1.46496 * 119.99867 * 179.97438 * 13 11 10 15 15 H 1.09000 * 109.47134 * 35.00873 * 14 13 11 16 16 C 1.52998 * 109.46894 * 155.00140 * 14 13 11 17 17 C 1.52996 * 109.47575 * 294.99999 * 16 14 13 18 18 H 1.09005 * 110.27392 * 55.63529 * 17 16 14 19 19 C 1.54943 * 110.31276 * 177.83086 * 17 16 14 20 20 C 1.55312 * 100.94175 * 155.36141 * 19 17 16 21 21 C 1.54378 * 102.25017 * 325.87091 * 20 19 17 22 22 O 1.43237 * 107.59265 * 21.35578 * 21 20 19 23 23 C 1.50695 * 109.47400 * 275.00256 * 14 13 11 24 24 O 1.20830 * 119.99962 * 0.02562 * 23 14 13 25 25 O 1.34234 * 120.00093 * 180.02562 * 23 14 13 26 26 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.46830 * 299.99601 * 9 7 2 28 28 H 1.08993 * 109.47221 * 59.99458 * 9 7 2 29 29 H 1.09004 * 109.46733 * 299.99896 * 10 9 7 30 30 H 1.09004 * 109.47253 * 59.99496 * 10 9 7 31 31 H 0.96999 * 120.00047 * 0.02562 * 13 11 10 32 32 H 1.08998 * 109.47261 * 55.00384 * 16 14 13 33 33 H 1.09000 * 109.47285 * 175.00138 * 16 14 13 34 34 H 1.08997 * 111.12739 * 273.27906 * 19 17 16 35 35 H 1.08998 * 111.12163 * 37.44610 * 19 17 16 36 36 H 1.09001 * 110.84715 * 207.67936 * 20 19 17 37 37 H 1.08998 * 110.84709 * 84.05766 * 20 19 17 38 38 H 1.09006 * 109.82791 * 261.83774 * 21 20 19 39 39 H 1.09007 * 109.83154 * 140.87270 * 21 20 19 40 40 H 0.96701 * 117.00076 * 180.02562 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 1.4000 5 1 3.5467 1.4400 -0.7001 6 1 1.4466 2.6526 -0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0014 11 6 5.5284 -2.6368 -0.0014 12 8 6.1348 -1.5865 -0.0009 13 7 6.2022 -3.8040 -0.0020 14 6 7.6672 -3.8041 -0.0027 15 1 8.0308 -2.9625 0.5870 16 6 8.1773 -5.1116 0.6063 17 6 7.7732 -5.1796 2.0804 18 1 6.6941 -5.0640 2.1819 19 6 8.2333 -6.5219 2.7029 20 6 8.3318 -6.1326 4.2032 21 6 8.7984 -4.6628 4.1303 22 8 8.4562 -4.1638 2.8320 23 6 8.1689 -3.6798 -1.4182 24 8 7.3834 -3.5989 -2.3327 25 8 9.4886 -3.6589 -1.6631 26 1 -0.4850 0.8401 0.0004 27 1 3.8751 -0.6798 -0.8895 28 1 3.8745 -0.6809 0.8904 29 1 3.6577 -3.1515 0.8880 30 1 3.6583 -3.1496 -0.8920 31 1 5.7172 -4.6441 -0.0028 32 1 7.7425 -5.9557 0.0711 33 1 9.2636 -5.1507 0.5253 34 1 7.4888 -7.3026 2.5477 35 1 9.2044 -6.8241 2.3109 36 1 9.0700 -6.7490 4.7162 37 1 7.3584 -6.2069 4.6879 38 1 9.8776 -4.6099 4.2743 39 1 8.2927 -4.0758 4.8972 40 1 9.7624 -3.5773 -2.5869 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608180629.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:33 Heat of formation + Delta-G solvation = -217.988409 kcal Electronic energy + Delta-G solvation = -22933.122630 eV Core-core repulsion = 19325.139498 eV Total energy + Delta-G solvation = -3607.983132 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.83695 -40.45114 -40.23369 -37.24237 -36.55665 -35.54952 -33.57412 -33.10123 -32.57488 -29.70316 -27.81136 -25.74744 -23.70857 -22.67519 -22.18487 -21.69847 -21.37867 -19.31724 -19.12060 -18.12081 -18.01257 -17.46388 -16.96720 -16.77374 -16.50155 -16.28483 -16.20350 -15.54283 -14.92798 -14.70162 -14.57181 -14.53341 -14.12141 -13.89960 -13.43926 -13.20965 -12.94772 -12.88707 -12.59620 -12.57469 -12.27256 -12.11233 -12.01112 -11.97668 -11.79007 -11.63526 -11.60237 -11.41688 -10.89823 -10.78931 -10.50278 -10.29177 -8.32512 -6.34991 1.08603 1.31437 1.33413 1.44216 1.49112 1.89640 2.33818 2.34275 2.88918 3.03175 3.48875 3.60815 3.92230 3.94556 4.06038 4.07019 4.19351 4.29040 4.36610 4.41552 4.47802 4.63356 4.72488 4.81038 4.90421 4.96589 4.98139 5.07374 5.11583 5.22503 5.33034 5.35631 5.42495 5.53414 5.59719 6.15189 6.22349 6.44392 6.70779 6.90136 7.20099 7.30337 8.83152 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.016606 B = 0.004146 C = 0.003638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.731924 B = 6752.427051 C = 7694.622017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.016 3.984 3 Si 0.936 3.064 4 H -0.266 1.266 5 H -0.267 1.267 6 H -0.277 1.277 7 C -0.528 4.528 8 H 0.053 0.947 9 C 0.005 3.995 10 C -0.115 4.115 11 C 0.521 3.479 12 O -0.581 6.581 13 N -0.700 5.700 14 C 0.158 3.842 15 H 0.110 0.890 16 C -0.107 4.107 17 C 0.072 3.928 18 H 0.072 0.928 19 C -0.143 4.143 20 C -0.152 4.152 21 C 0.040 3.960 22 O -0.408 6.408 23 C 0.468 3.532 24 O -0.543 6.543 25 O -0.504 6.504 26 H 0.268 0.732 27 H 0.004 0.996 28 H 0.011 0.989 29 H 0.111 0.889 30 H 0.101 0.899 31 H 0.422 0.578 32 H 0.116 0.884 33 H 0.111 0.889 34 H 0.103 0.897 35 H 0.093 0.907 36 H 0.100 0.900 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.060 0.940 40 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.096 -18.847 5.712 30.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.182 4.182 3 Si 0.760 3.240 4 H -0.191 1.191 5 H -0.191 1.191 6 H -0.202 1.202 7 C -0.566 4.566 8 H 0.071 0.929 9 C -0.033 4.033 10 C -0.154 4.154 11 C 0.311 3.689 12 O -0.460 6.460 13 N -0.355 5.355 14 C 0.051 3.949 15 H 0.128 0.872 16 C -0.144 4.144 17 C 0.014 3.986 18 H 0.090 0.910 19 C -0.180 4.180 20 C -0.190 4.190 21 C -0.036 4.036 22 O -0.328 6.328 23 C 0.310 3.690 24 O -0.433 6.433 25 O -0.317 6.317 26 H 0.077 0.923 27 H 0.022 0.978 28 H 0.029 0.971 29 H 0.129 0.871 30 H 0.119 0.881 31 H 0.261 0.739 32 H 0.134 0.866 33 H 0.130 0.870 34 H 0.122 0.878 35 H 0.111 0.889 36 H 0.118 0.882 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.079 0.921 40 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges 23.099 -17.807 5.795 29.736 hybrid contribution -0.229 0.818 -0.717 1.111 sum 22.870 -16.989 5.078 28.939 Atomic orbital electron populations 1.70016 1.07664 1.28080 1.52491 1.25756 0.95474 1.02673 0.94261 0.85871 0.79102 0.79760 0.79241 1.19079 1.19139 1.20194 1.21411 0.91042 0.93846 1.50318 0.92874 1.19224 0.94162 0.93718 0.96215 1.21495 0.88569 1.00072 1.05278 1.21309 0.91316 0.83193 0.73127 1.90641 1.71340 1.33335 1.50698 1.45658 1.05116 1.09329 1.75361 1.20461 0.81578 1.04094 0.88803 0.87194 1.22027 1.04252 0.93725 0.94409 1.23131 0.96763 0.88039 0.90619 0.91033 1.23306 1.03916 0.96391 0.94407 1.23127 1.03223 0.95124 0.97507 1.23279 1.00630 0.95122 0.84566 1.88446 1.77644 1.39373 1.27352 1.24342 0.80604 0.70962 0.93115 1.90741 1.57991 1.46677 1.47867 1.84478 1.24374 1.84479 1.38400 0.92334 0.97759 0.97109 0.87076 0.88122 0.73924 0.86559 0.87049 0.87833 0.88882 0.88185 0.90369 0.90503 0.92145 0.71129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.76 13.96 21.45 0.30 -59.46 16 2 C 0.02 0.98 5.47 84.66 0.46 1.44 16 3 Si 0.94 48.06 27.47 68.60 1.88 49.95 16 4 H -0.27 -13.11 7.11 99.48 0.71 -12.40 16 5 H -0.27 -13.87 6.54 99.48 0.65 -13.22 16 6 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 7 C -0.53 -31.17 9.66 25.60 0.25 -30.93 16 8 H 0.05 3.27 7.99 -2.91 -0.02 3.24 16 9 C 0.00 0.25 3.33 29.85 0.10 0.35 16 10 C -0.11 -4.51 5.64 29.85 0.17 -4.35 16 11 C 0.52 19.63 7.66 87.66 0.67 20.30 16 12 O -0.58 -27.21 15.64 -3.03 -0.05 -27.26 16 13 N -0.70 -18.40 4.02 -446.12 -1.79 -20.19 16 14 C 0.16 3.74 2.44 44.24 0.11 3.85 16 15 H 0.11 3.22 7.22 -2.39 -0.02 3.21 16 16 C -0.11 -1.45 4.46 30.59 0.14 -1.32 16 17 C 0.07 1.07 3.35 31.26 0.10 1.17 16 18 H 0.07 1.16 7.68 -2.38 -0.02 1.14 16 19 C -0.14 -1.20 6.57 32.05 0.21 -0.99 16 20 C -0.15 -1.45 7.02 31.86 0.22 -1.23 16 21 C 0.04 0.61 7.79 72.45 0.56 1.18 16 22 O -0.41 -8.70 10.61 -148.98 -1.58 -10.28 16 23 C 0.47 12.04 7.66 71.23 0.55 12.58 16 24 O -0.54 -18.34 17.08 21.95 0.37 -17.97 16 25 O -0.50 -9.10 13.23 -51.46 -0.68 -9.78 16 26 H 0.27 15.86 8.31 -92.70 -0.77 15.09 16 27 H 0.00 0.22 7.15 -2.39 -0.02 0.21 16 28 H 0.01 0.56 7.53 -2.39 -0.02 0.54 16 29 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 30 H 0.10 3.72 8.14 -2.38 -0.02 3.70 16 31 H 0.42 7.86 8.60 -92.71 -0.80 7.06 16 32 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.11 1.31 7.99 -2.39 -0.02 1.29 16 34 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.09 0.59 8.06 -2.39 -0.02 0.57 16 36 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 39 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 40 H 0.43 4.21 9.10 -74.06 -0.67 3.54 16 Total: -1.00 -84.86 338.58 1.54 -83.33 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -0.47 Total: 9.58 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: 3.54 Total: 2.07 kcal Atomic # 7 Polarization: -78.15 SS G_CDS: -1.49 Total: -79.65 kcal Atomic # 8 Polarization: -63.34 SS G_CDS: -1.93 Total: -65.28 kcal Atomic # 14 Polarization: 48.06 SS G_CDS: 1.88 Total: 49.95 kcal Total: -84.86 1.54 -83.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608180629.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.662 kcal (2) G-P(sol) polarization free energy of solvation -84.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -219.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -217.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds