Wall clock time and date at job start Tue Mar 31 2020 05:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 C 1.53001 * 109.47168 * 180.02562 * 9 7 2 11 11 N 1.46499 * 109.47073 * 179.97438 * 10 9 7 12 12 C 1.34784 * 119.99897 * 179.97438 * 11 10 9 13 13 O 1.21283 * 119.99641 * 0.02562 * 12 11 10 14 14 C 1.50694 * 119.99992 * 180.02562 * 12 11 10 15 15 H 1.09002 * 109.87164 * 304.29983 * 14 12 11 16 16 C 1.54100 * 109.88117 * 65.31219 * 14 12 11 17 17 C 1.54808 * 104.18952 * 121.45138 * 16 14 12 18 18 C 1.54999 * 102.09016 * 20.88277 * 17 16 14 19 19 H 1.08994 * 110.61716 * 81.47797 * 18 17 16 20 20 C 1.53005 * 110.61506 * 204.47496 * 18 17 16 21 21 C 1.52996 * 109.46889 * 185.00177 * 20 18 17 22 22 C 1.50703 * 109.46999 * 180.02562 * 21 20 18 23 23 O 1.20823 * 120.00097 * 359.97438 * 22 21 20 24 24 O 1.34227 * 119.99814 * 180.02562 * 22 21 20 25 25 O 1.43741 * 109.87940 * 183.29932 * 14 12 11 26 26 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 27 27 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 28 28 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 29 29 H 1.09002 * 109.46926 * 299.99825 * 10 9 7 30 30 H 1.08998 * 109.46837 * 60.00021 * 10 9 7 31 31 H 0.96991 * 120.00466 * 0.02562 * 11 10 9 32 32 H 1.09002 * 110.48718 * 240.12980 * 16 14 12 33 33 H 1.09003 * 110.48340 * 2.64137 * 16 14 12 34 34 H 1.09004 * 110.90599 * 139.08051 * 17 16 14 35 35 H 1.09000 * 110.90415 * 262.65008 * 17 16 14 36 36 H 1.09004 * 109.46672 * 305.00099 * 20 18 17 37 37 H 1.08995 * 109.47242 * 65.00042 * 20 18 17 38 38 H 1.09004 * 109.47399 * 299.99476 * 21 20 18 39 39 H 1.08995 * 109.47289 * 59.99894 * 21 20 18 40 40 H 0.96707 * 116.99422 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 7 1.5127 -4.9308 0.0001 12 6 2.1866 -6.0981 -0.0003 13 8 3.3994 -6.0981 -0.0007 14 6 1.4331 -7.4031 -0.0003 15 1 0.7478 -7.4353 0.8468 16 6 0.6464 -7.5541 -1.3167 17 6 1.1881 -8.8663 -1.9342 18 6 1.7909 -9.5819 -0.6984 19 1 1.0114 -10.0909 -0.1316 20 6 2.8800 -10.5682 -1.1251 21 6 3.3689 -11.3481 0.0969 22 6 4.4421 -12.3191 -0.3232 23 8 4.7808 -12.3813 -1.4813 24 8 5.0210 -13.1156 0.5890 25 8 2.3574 -8.5012 0.0770 26 1 -0.4850 0.8401 0.0004 27 1 0.6247 -2.5571 0.8897 28 1 0.6240 -2.5568 -0.8903 29 1 2.8719 -3.6044 -0.8906 30 1 2.8719 -3.6044 0.8894 31 1 0.5428 -4.9308 0.0000 32 1 -0.4214 -7.6395 -1.1154 33 1 0.8428 -6.7096 -1.9774 34 1 0.3797 -9.4546 -2.3685 35 1 1.9577 -8.6577 -2.6774 36 1 2.4735 -11.2625 -1.8606 37 1 3.7140 -10.0209 -1.5644 38 1 3.7755 -10.6538 0.8323 39 1 2.5350 -11.8954 0.5362 40 1 5.7046 -13.7217 0.2719 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608181992.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:45 Heat of formation + Delta-G solvation = -197.839549 kcal Electronic energy + Delta-G solvation = -21937.975614 eV Core-core repulsion = 18330.866202 eV Total energy + Delta-G solvation = -3607.109411 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.63412 -40.18049 -38.35748 -36.50743 -34.86963 -34.02473 -32.95981 -32.24682 -30.23214 -28.90759 -25.92474 -24.43765 -22.69824 -21.63280 -21.03363 -20.89437 -20.07265 -18.39756 -17.30225 -17.08234 -16.62338 -16.39140 -16.27020 -15.89010 -15.01807 -14.55233 -14.44803 -14.12983 -14.02675 -13.75258 -13.49695 -13.23047 -12.96061 -12.31833 -12.20599 -11.98961 -11.87881 -11.78962 -11.39251 -11.26921 -11.21405 -11.08141 -11.01760 -10.83667 -10.65337 -10.34591 -10.14646 -9.73173 -9.40359 -9.08214 -8.56345 -8.37325 -6.11135 -4.13835 1.90785 2.72148 2.91964 3.18677 3.28730 3.34981 3.39699 3.92670 4.28688 4.36367 4.41743 4.60792 4.63993 4.71818 4.87908 4.93491 5.06080 5.21460 5.26059 5.26293 5.35865 5.39681 5.53612 5.64850 5.72438 5.82976 5.91829 6.18948 6.29980 6.33024 6.65655 6.71961 6.89283 7.49714 7.57276 7.59270 7.87216 7.97889 8.26186 8.63228 8.92131 9.51092 11.00433 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.037278 B = 0.002473 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 750.926110 B =11317.533585 C =11740.600205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.279 1.279 5 H -0.272 1.272 6 H -0.286 1.286 7 C -0.522 4.522 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.123 3.877 11 N -0.721 5.721 12 C 0.504 3.496 13 O -0.531 6.531 14 C 0.061 3.939 15 H 0.093 0.907 16 C -0.148 4.148 17 C -0.147 4.147 18 C 0.072 3.928 19 H 0.076 0.924 20 C -0.102 4.102 21 C -0.113 4.113 22 C 0.479 3.521 23 O -0.518 6.518 24 O -0.519 6.519 25 O -0.343 6.343 26 H 0.262 0.738 27 H 0.023 0.977 28 H 0.023 0.977 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.397 0.603 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.116 0.884 39 H 0.106 0.894 40 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.480 -24.893 -0.658 24.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.205 1.205 5 H -0.197 1.197 6 H -0.212 1.212 7 C -0.560 4.560 8 H 0.078 0.922 9 C -0.024 4.024 10 C 0.001 3.999 11 N -0.373 5.373 12 C 0.288 3.712 13 O -0.407 6.407 14 C -0.001 4.001 15 H 0.111 0.889 16 C -0.186 4.186 17 C -0.185 4.185 18 C 0.015 3.985 19 H 0.094 0.906 20 C -0.139 4.139 21 C -0.151 4.151 22 C 0.322 3.678 23 O -0.406 6.406 24 O -0.331 6.331 25 O -0.261 6.261 26 H 0.072 0.928 27 H 0.041 0.959 28 H 0.041 0.959 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.231 0.769 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.105 0.895 37 H 0.104 0.896 38 H 0.134 0.866 39 H 0.124 0.876 40 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 0.260 -24.504 -0.724 24.516 hybrid contribution 0.156 0.605 -0.237 0.668 sum 0.416 -23.899 -0.961 23.922 Atomic orbital electron populations 1.69954 1.06082 1.26883 1.50401 1.25000 0.94908 0.99430 0.94973 0.86505 0.79842 0.82954 0.78218 1.20541 1.19725 1.21167 1.21053 0.93269 0.90375 1.51332 0.92239 1.19325 0.94186 0.91086 0.97851 1.21736 0.96055 0.81277 1.00864 1.46262 1.10478 1.06281 1.74230 1.20366 0.88383 0.85102 0.77373 1.90696 1.13778 1.87430 1.48784 1.22633 0.90988 0.87317 0.99145 0.88899 1.22940 1.00417 0.99411 0.95813 1.23142 1.01337 0.95745 0.98248 1.23250 0.94913 0.88951 0.91398 0.90572 1.21471 0.99240 0.96913 0.96315 1.21394 0.95995 0.96414 1.01294 1.23633 0.81574 0.79272 0.83315 1.90732 1.62234 1.67263 1.20372 1.84554 1.53662 1.50854 1.44034 1.89049 1.43891 1.21777 1.71430 0.92843 0.95913 0.95917 0.92542 0.92511 0.76933 0.89454 0.89520 0.89692 0.89925 0.89503 0.89596 0.86621 0.87605 0.73227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.91 13.29 55.43 0.74 -25.17 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.52 -14.40 9.11 -34.44 -0.31 -14.72 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 9 C 0.01 0.32 5.09 -27.89 -0.14 0.17 16 10 C 0.12 2.60 5.61 -4.04 -0.02 2.58 16 11 N -0.72 -12.30 5.53 -60.29 -0.33 -12.63 16 12 C 0.50 8.66 6.95 -10.98 -0.08 8.59 16 13 O -0.53 -11.58 16.53 -14.01 -0.23 -11.81 16 14 C 0.06 0.75 3.84 -27.31 -0.10 0.65 16 15 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 16 C -0.15 -1.41 6.62 -25.20 -0.17 -1.58 16 17 C -0.15 -1.24 6.59 -24.72 -0.16 -1.41 16 18 C 0.07 0.65 3.29 -25.67 -0.08 0.56 16 19 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 20 C -0.10 -0.88 4.26 -26.73 -0.11 -1.00 16 21 C -0.11 -0.87 5.76 -27.88 -0.16 -1.03 16 22 C 0.48 4.35 8.33 36.01 0.30 4.65 16 23 O -0.52 -6.35 16.74 -18.75 -0.31 -6.66 16 24 O -0.52 -3.62 13.42 -39.25 -0.53 -4.15 16 25 O -0.34 -4.55 10.31 -54.80 -0.57 -5.11 16 26 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 27 H 0.02 0.58 8.14 -51.92 -0.42 0.15 16 28 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 31 H 0.40 5.67 8.47 -40.82 -0.35 5.32 16 32 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.09 0.94 7.69 -51.93 -0.40 0.54 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.08 0.79 8.06 -51.93 -0.42 0.37 16 36 H 0.09 0.65 8.10 -51.93 -0.42 0.23 16 37 H 0.09 0.95 8.10 -51.93 -0.42 0.53 16 38 H 0.12 0.97 8.06 -51.93 -0.42 0.55 16 39 H 0.11 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.41 1.21 9.10 45.56 0.41 1.62 16 LS Contribution 344.49 15.07 5.19 5.19 Total: -1.00 -35.75 344.49 -7.56 -43.32 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -5.35 Total: 1.71 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: -1.15 Total: -0.98 kcal Atomic # 7 Polarization: -38.21 SS G_CDS: 0.40 Total: -37.80 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: -1.64 Total: -27.74 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -35.75 -7.56 -43.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608181992.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.523 kcal (2) G-P(sol) polarization free energy of solvation -35.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds