Wall clock time and date at job start Tue Mar 31 2020 05:26:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86798 * 119.99787 * 2 1 4 4 H 1.48498 * 109.46984 * 264.98435 * 3 2 1 5 5 H 1.48500 * 109.47222 * 24.98713 * 3 2 1 6 6 H 1.48498 * 109.47102 * 144.98815 * 3 2 1 7 7 C 1.38951 * 119.99724 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99682 * 201.38904 * 7 2 1 9 9 N 1.37096 * 120.00237 * 21.39484 * 7 2 1 10 10 C 1.46499 * 119.99978 * 11.50451 * 9 7 2 11 11 C 1.50699 * 109.47158 * 264.66917 * 10 9 7 12 12 O 1.20826 * 120.00068 * 359.97438 * 11 10 9 13 13 O 1.34234 * 120.00092 * 180.02562 * 11 10 9 14 14 C 1.34778 * 119.99699 * 191.50795 * 9 7 2 15 15 O 1.21291 * 120.00413 * 359.97438 * 14 9 7 16 16 C 1.50701 * 119.99832 * 179.97438 * 14 9 7 17 17 O 1.42891 * 109.47325 * 179.97438 * 16 14 9 18 18 C 1.42902 * 114.00191 * 179.97438 * 17 16 14 19 19 C 1.52999 * 109.47199 * 179.97438 * 18 17 16 20 20 C 1.54273 * 110.03597 * 292.91268 * 19 18 17 21 21 C 1.54965 * 104.15880 * 217.13586 * 20 19 18 22 22 C 1.54892 * 102.77931 * 37.88685 * 21 20 19 23 23 C 1.53872 * 110.03433 * 175.69448 * 19 18 17 24 24 H 0.96994 * 120.00067 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47068 * 24.67095 * 10 9 7 26 26 H 1.09001 * 109.47119 * 144.66824 * 10 9 7 27 27 H 0.96695 * 116.99765 * 179.97438 * 13 11 10 28 28 H 1.09002 * 109.47145 * 59.99441 * 16 14 9 29 29 H 1.08999 * 109.47088 * 300.00272 * 16 14 9 30 30 H 1.08994 * 109.47478 * 300.00505 * 18 17 16 31 31 H 1.09009 * 109.46780 * 60.00709 * 18 17 16 32 32 H 1.09003 * 110.01753 * 54.30162 * 19 18 17 33 33 H 1.08994 * 110.48242 * 335.78067 * 20 19 18 34 34 H 1.08998 * 110.48341 * 98.42717 * 20 19 18 35 35 H 1.08996 * 110.72101 * 279.57341 * 21 20 19 36 36 H 1.08999 * 110.91981 * 156.29835 * 21 20 19 37 37 H 1.09000 * 110.48762 * 203.40415 * 22 21 20 38 38 H 1.08996 * 110.59930 * 80.81487 * 22 21 20 39 39 H 1.09005 * 110.03389 * 238.57801 * 23 19 18 40 40 H 1.09002 * 110.03417 * 359.97438 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.6015 1.9852 -1.3947 5 1 1.3965 2.6809 0.5914 6 1 3.4886 1.4731 0.8033 7 6 2.0088 -1.2034 0.0005 8 1 3.0331 -1.2354 0.3417 9 7 1.3942 -2.3500 -0.4321 10 6 0.1062 -2.2736 -1.1259 11 6 -1.0107 -2.4852 -0.1365 12 8 -0.7568 -2.6803 1.0286 13 8 -2.2875 -2.4579 -0.5497 14 6 1.9750 -3.5474 -0.2189 15 8 3.0415 -3.6106 0.3551 16 6 1.2991 -4.8078 -0.6939 17 8 2.1048 -5.9377 -0.3535 18 6 1.5510 -7.1905 -0.7609 19 6 2.4929 -8.3230 -0.3475 20 6 3.8073 -8.2370 -1.1506 21 6 4.1855 -9.7158 -1.4182 22 6 2.8105 -10.3791 -1.6801 23 6 1.8596 -9.6845 -0.6836 24 1 -0.4850 0.8400 0.0004 25 1 0.0005 -1.2924 -1.5888 26 1 0.0614 -3.0448 -1.8948 27 1 -2.9692 -2.5992 0.1214 28 1 1.1710 -4.7659 -1.7756 29 1 0.3237 -4.8993 -0.2160 30 1 0.5813 -7.3315 -0.2837 31 1 1.4276 -7.1981 -1.8439 32 1 2.7033 -8.2624 0.7203 33 1 3.6463 -7.7086 -2.0902 34 1 4.5820 -7.7447 -0.5628 35 1 4.6661 -10.1552 -0.5441 36 1 4.8285 -9.8007 -2.2942 37 1 2.8587 -11.4493 -1.4788 38 1 2.4868 -10.1989 -2.7051 39 1 1.7631 -10.2850 0.2211 40 1 0.8809 -9.5384 -1.1407 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608183747.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:12 Heat of formation + Delta-G solvation = -194.459013 kcal Electronic energy + Delta-G solvation = -23196.921257 eV Core-core repulsion = 19589.958437 eV Total energy + Delta-G solvation = -3606.962820 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.32479 -40.19784 -39.51788 -37.85724 -36.97811 -36.39357 -33.83198 -31.52453 -29.77571 -29.53670 -28.90024 -26.28389 -25.09480 -22.90347 -21.53214 -21.18127 -20.46288 -19.09357 -18.77035 -18.39307 -17.60343 -17.39446 -16.90327 -16.78741 -16.31462 -16.20511 -15.93323 -15.71491 -15.17991 -14.76201 -14.18899 -14.16912 -13.72540 -13.56956 -13.47984 -13.24575 -12.77808 -12.64186 -12.39779 -12.20418 -12.16671 -12.12558 -11.95957 -11.88549 -11.67319 -11.61124 -11.47034 -11.31792 -10.97702 -10.63163 -10.45870 -9.96332 -8.46958 -5.97591 1.35041 1.42816 1.53987 1.62572 1.79745 2.11291 2.46646 2.51385 3.01348 3.21897 3.70298 3.72284 3.78147 3.93939 4.01336 4.20122 4.30923 4.38608 4.40793 4.49856 4.58453 4.69261 4.76810 4.78133 4.86728 4.91046 4.92284 5.07815 5.12109 5.26686 5.37346 5.43228 5.47145 5.50378 5.86693 5.90781 6.17800 6.40201 7.05864 7.23540 7.39611 7.85859 8.58722 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.024423 B = 0.003999 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.166142 B = 6999.876139 C = 7872.778625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.002 3.998 3 Si 0.995 3.005 4 H -0.258 1.258 5 H -0.276 1.276 6 H -0.282 1.282 7 C -0.342 4.342 8 H 0.078 0.922 9 N -0.440 5.440 10 C 0.133 3.867 11 C 0.496 3.504 12 O -0.555 6.555 13 O -0.514 6.514 14 C 0.443 3.557 15 O -0.613 6.613 16 C 0.067 3.933 17 O -0.392 6.392 18 C 0.058 3.942 19 C -0.094 4.094 20 C -0.119 4.119 21 C -0.123 4.123 22 C -0.119 4.119 23 C -0.112 4.112 24 H 0.278 0.722 25 H 0.134 0.866 26 H 0.124 0.876 27 H 0.415 0.585 28 H 0.103 0.897 29 H 0.071 0.929 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.044 0.956 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.188 -14.468 -8.684 17.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.199 4.199 3 Si 0.819 3.181 4 H -0.182 1.182 5 H -0.201 1.201 6 H -0.207 1.207 7 C -0.469 4.469 8 H 0.096 0.904 9 N -0.161 5.161 10 C 0.008 3.992 11 C 0.339 3.661 12 O -0.445 6.445 13 O -0.326 6.326 14 C 0.233 3.767 15 O -0.499 6.499 16 C -0.013 4.013 17 O -0.311 6.311 18 C -0.018 4.018 19 C -0.113 4.113 20 C -0.156 4.156 21 C -0.161 4.161 22 C -0.157 4.157 23 C -0.150 4.150 24 H 0.088 0.912 25 H 0.152 0.848 26 H 0.141 0.859 27 H 0.274 0.726 28 H 0.121 0.879 29 H 0.088 0.912 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.063 0.937 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.287 -14.335 -8.286 16.881 hybrid contribution -0.363 1.135 1.054 1.591 sum -3.650 -13.200 -7.232 15.488 Atomic orbital electron populations 1.69884 1.06668 1.29045 1.47629 1.25935 0.96273 1.02174 0.95508 0.84925 0.77611 0.76395 0.79210 1.18231 1.20124 1.20695 1.19661 0.97565 0.85111 1.44606 0.90433 1.43578 1.17364 1.04954 1.50160 1.21122 0.79334 1.06983 0.91743 1.23912 0.83587 0.69615 0.89026 1.90630 1.84843 1.47401 1.21590 1.84452 1.16837 1.84780 1.46513 1.20688 0.87456 0.85185 0.83420 1.90497 1.25609 1.86875 1.46870 1.22074 0.93393 0.84782 1.01042 1.88000 1.47220 1.14273 1.81570 1.22999 0.96734 0.82420 0.99604 1.21810 0.95411 0.93961 1.00134 1.22375 0.96207 0.97602 0.99453 1.22533 0.97823 0.93980 1.01737 1.22356 0.94047 0.99888 0.99360 1.22123 0.99399 0.93228 1.00223 0.91207 0.84839 0.85883 0.72569 0.87918 0.91158 0.92496 0.91272 0.92141 0.91895 0.93708 0.91482 0.90738 0.90167 0.90886 0.90761 0.90415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -45.46 9.27 21.66 0.20 -45.25 16 2 C 0.00 0.12 4.95 84.93 0.42 0.54 16 3 Si 1.00 41.94 29.60 68.60 2.03 43.97 16 4 H -0.26 -10.10 7.11 99.48 0.71 -9.40 16 5 H -0.28 -11.18 7.11 99.48 0.71 -10.47 16 6 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 7 C -0.34 -19.58 9.42 84.04 0.79 -18.79 16 8 H 0.08 4.83 7.31 -2.91 -0.02 4.81 16 9 N -0.44 -22.80 2.17 -639.60 -1.39 -24.18 16 10 C 0.13 5.56 4.98 85.63 0.43 5.99 16 11 C 0.50 20.98 6.05 71.24 0.43 21.41 16 12 O -0.55 -28.74 17.03 21.96 0.37 -28.37 16 13 O -0.51 -16.45 13.42 -51.46 -0.69 -17.14 16 14 C 0.44 23.14 7.52 87.66 0.66 23.80 16 15 O -0.61 -38.06 16.11 15.97 0.26 -37.80 16 16 C 0.07 2.60 5.03 71.24 0.36 2.95 16 17 O -0.39 -15.50 9.71 -129.94 -1.26 -16.77 16 18 C 0.06 1.60 4.98 71.98 0.36 1.95 16 19 C -0.09 -2.34 3.19 -10.07 -0.03 -2.37 16 20 C -0.12 -2.96 6.22 31.70 0.20 -2.77 16 21 C -0.12 -2.23 6.91 31.91 0.22 -2.01 16 22 C -0.12 -1.76 6.83 31.67 0.22 -1.55 16 23 C -0.11 -1.92 6.46 31.32 0.20 -1.72 16 24 H 0.28 13.28 8.31 -92.71 -0.77 12.51 16 25 H 0.13 5.80 6.01 -2.39 -0.01 5.78 16 26 H 0.12 3.84 6.66 -2.39 -0.02 3.82 16 27 H 0.41 9.74 9.10 -74.06 -0.67 9.07 16 28 H 0.10 3.10 7.41 -2.39 -0.02 3.08 16 29 H 0.07 2.60 7.56 -2.39 -0.02 2.58 16 30 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.07 1.57 8.02 -2.38 -0.02 1.55 16 32 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.06 1.59 7.77 -2.39 -0.02 1.57 16 34 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 40 H 0.08 1.15 7.67 -2.39 -0.02 1.13 16 Total: -1.00 -78.14 332.14 4.15 -73.99 By element: Atomic # 1 Polarization: 23.74 SS G_CDS: 0.38 Total: 24.12 kcal Atomic # 6 Polarization: 23.19 SS G_CDS: 4.25 Total: 27.44 kcal Atomic # 7 Polarization: -68.25 SS G_CDS: -1.19 Total: -69.44 kcal Atomic # 8 Polarization: -98.76 SS G_CDS: -1.32 Total: -100.08 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Total: -78.14 4.15 -73.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608183747.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.472 kcal (2) G-P(sol) polarization free energy of solvation -78.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds