Wall clock time and date at job start Tue Mar 31 2020 05:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86800 * 120.00023 * 2 1 4 4 H 1.48501 * 109.46987 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47471 * 300.00169 * 3 2 1 6 6 H 1.48499 * 109.46999 * 60.00557 * 3 2 1 7 7 C 1.38945 * 119.99897 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00086 * 201.75244 * 7 2 1 9 9 N 1.37104 * 120.00041 * 22.02663 * 7 2 1 10 10 C 1.46498 * 119.99919 * 34.31291 * 9 7 2 11 11 C 1.52999 * 109.46951 * 93.46067 * 10 9 7 12 12 C 1.50698 * 109.47298 * 179.97438 * 11 10 9 13 13 O 1.20821 * 119.99973 * 0.02562 * 12 11 10 14 14 O 1.34228 * 120.00309 * 179.97438 * 12 11 10 15 15 C 1.34775 * 120.00136 * 214.32234 * 9 7 2 16 16 O 1.21287 * 120.00253 * 180.02562 * 15 9 7 17 17 C 1.50705 * 120.00004 * 359.97438 * 15 9 7 18 18 C 1.52998 * 109.47233 * 180.02562 * 17 15 9 19 19 O 1.42900 * 110.01373 * 64.30267 * 18 17 15 20 20 C 1.54269 * 110.03098 * 302.91254 * 18 17 15 21 21 C 1.54967 * 104.15642 * 217.13989 * 20 18 17 22 22 C 1.54887 * 102.77984 * 37.88650 * 21 20 18 23 23 C 1.53878 * 110.03174 * 185.69321 * 18 17 15 24 24 H 0.97009 * 119.99708 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47266 * 213.45857 * 10 9 7 26 26 H 1.08996 * 109.47203 * 333.46476 * 10 9 7 27 27 H 1.09001 * 109.47453 * 300.00095 * 11 10 9 28 28 H 1.09008 * 109.47035 * 59.99831 * 11 10 9 29 29 H 0.96693 * 117.00372 * 179.97438 * 14 12 11 30 30 H 1.09003 * 109.47271 * 300.00904 * 17 15 9 31 31 H 1.09001 * 109.46594 * 60.00244 * 17 15 9 32 32 H 0.96696 * 113.99755 * 300.69480 * 19 18 17 33 33 H 1.09000 * 110.48438 * 335.77937 * 20 18 17 34 34 H 1.08993 * 110.49067 * 98.42672 * 20 18 17 35 35 H 1.09001 * 110.71682 * 279.57275 * 21 20 18 36 36 H 1.09005 * 110.76325 * 156.22541 * 21 20 18 37 37 H 1.09010 * 110.48411 * 203.41012 * 22 21 20 38 38 H 1.08995 * 110.48605 * 80.76548 * 22 21 20 39 39 H 1.08996 * 110.03345 * 238.56900 * 23 18 17 40 40 H 1.09004 * 110.03053 * 0.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8894 2.3965 -1.2124 6 1 1.8895 2.3964 1.2126 7 6 2.0088 -1.2033 -0.0005 8 1 3.0311 -1.2368 0.3461 9 7 1.3983 -2.3471 -0.4464 10 6 0.4301 -2.2806 -1.5437 11 6 1.1450 -2.5409 -2.8711 12 6 0.1490 -2.4731 -4.0000 13 8 -1.0134 -2.2401 -3.7668 14 8 0.5532 -2.6706 -5.2646 15 6 1.6888 -3.5327 0.1251 16 8 1.1491 -4.5446 -0.2696 17 6 2.6852 -3.6012 1.2537 18 6 2.8313 -5.0517 1.7177 19 8 3.3829 -5.8481 0.6672 20 6 1.4575 -5.6123 2.1402 21 6 1.7750 -6.5141 3.3599 22 6 2.8804 -5.7175 4.0964 23 6 3.7359 -5.1190 2.9607 24 1 -0.4850 0.8401 0.0004 25 1 -0.3422 -3.0349 -1.3931 26 1 -0.0273 -1.2915 -1.5653 27 1 1.9174 -1.7866 -3.0218 28 1 1.6025 -3.5301 -2.8496 29 1 -0.1220 -2.6176 -5.9547 30 1 3.6508 -3.2313 0.9089 31 1 2.3363 -2.9871 2.0840 32 1 2.8521 -5.8551 -0.1410 33 1 0.7875 -4.8025 2.4290 34 1 1.0209 -6.2005 1.3332 35 1 2.1497 -7.4846 3.0347 36 1 0.8956 -6.6308 3.9934 37 1 3.4813 -6.3830 4.7164 38 1 2.4406 -4.9247 4.7013 39 1 4.5951 -5.7597 2.7630 40 1 4.0704 -4.1180 3.2336 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608185219.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:10 Heat of formation + Delta-G solvation = -193.755872 kcal Electronic energy + Delta-G solvation = -23768.756154 eV Core-core repulsion = 20161.823824 eV Total energy + Delta-G solvation = -3606.932330 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -39.90499 -39.47017 -37.73763 -35.82139 -35.03290 -34.21045 -32.03684 -31.14419 -29.62773 -28.37794 -25.57381 -25.24228 -23.36833 -20.66254 -20.55724 -19.40066 -19.15845 -17.81907 -16.99929 -16.23478 -15.99136 -15.75049 -15.51321 -15.15830 -14.97077 -14.31489 -14.18812 -13.93791 -13.10117 -12.94417 -12.82643 -12.60614 -12.30612 -12.11905 -11.65809 -11.44753 -11.34592 -11.18645 -11.11936 -10.95193 -10.86891 -10.72907 -10.54573 -10.46356 -10.32077 -10.19680 -10.13292 -10.07023 -9.29058 -9.20380 -8.51351 -7.71525 -6.49856 -4.20071 2.64070 3.02471 3.15363 3.18245 3.37971 3.76512 4.02728 4.59392 4.74274 4.86549 4.97101 5.09750 5.31318 5.56459 5.59349 5.74672 5.79483 5.81861 5.87686 5.94106 6.01918 6.11350 6.15954 6.25260 6.29190 6.36985 6.43377 6.53400 6.55485 6.69306 6.78258 6.82681 6.89244 7.23789 7.38898 7.74477 8.21189 8.27910 8.33792 8.94125 9.34401 9.77556 10.50938 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.013594 B = 0.006096 C = 0.004656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.174915 B = 4592.305166 C = 6012.545996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.850 5.850 2 C 0.045 3.955 3 Si 0.912 3.088 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.280 1.280 7 C -0.349 4.349 8 H 0.094 0.906 9 N -0.434 5.434 10 C 0.123 3.877 11 C -0.124 4.124 12 C 0.483 3.517 13 O -0.514 6.514 14 O -0.525 6.525 15 C 0.471 3.529 16 O -0.607 6.607 17 C -0.144 4.144 18 C 0.148 3.852 19 O -0.569 6.569 20 C -0.133 4.133 21 C -0.127 4.127 22 C -0.123 4.123 23 C -0.113 4.113 24 H 0.272 0.728 25 H 0.065 0.935 26 H 0.118 0.882 27 H 0.103 0.897 28 H 0.098 0.902 29 H 0.401 0.599 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.384 0.616 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.579 -4.600 0.334 6.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.163 4.163 3 Si 0.738 3.262 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.206 1.206 7 C -0.476 4.476 8 H 0.112 0.888 9 N -0.151 5.151 10 C -0.001 4.001 11 C -0.163 4.163 12 C 0.325 3.675 13 O -0.402 6.402 14 O -0.336 6.336 15 C 0.261 3.739 16 O -0.495 6.495 17 C -0.184 4.184 18 C 0.107 3.893 19 O -0.379 6.379 20 C -0.170 4.170 21 C -0.164 4.164 22 C -0.160 4.160 23 C -0.151 4.151 24 H 0.082 0.918 25 H 0.083 0.917 26 H 0.136 0.864 27 H 0.121 0.879 28 H 0.116 0.884 29 H 0.259 0.741 30 H 0.102 0.898 31 H 0.112 0.888 32 H 0.235 0.765 33 H 0.086 0.914 34 H 0.099 0.901 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.084 0.916 39 H 0.091 0.909 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.579 -4.969 0.960 6.825 hybrid contribution -0.524 1.302 -0.944 1.691 sum 4.055 -3.667 0.016 5.467 Atomic orbital electron populations 1.69932 1.06275 1.28055 1.44245 1.25383 0.95067 1.00037 0.95781 0.86118 0.80138 0.81799 0.78161 1.19003 1.20412 1.20573 1.19491 0.97188 0.85245 1.45708 0.88838 1.43447 1.37983 1.05943 1.27752 1.21222 0.90900 1.05898 0.82066 1.21850 0.97758 1.05021 0.91682 1.23781 0.89194 0.71578 0.82943 1.90704 1.20382 1.44567 1.84507 1.84588 1.46485 1.84381 1.18171 1.20452 0.85117 0.84010 0.84336 1.90460 1.56923 1.35143 1.66942 1.22187 0.99880 0.97251 0.99091 1.21503 0.92119 0.88541 0.87112 1.86309 1.53693 1.71448 1.26458 1.22961 0.97077 0.99332 0.97665 1.22540 0.97911 0.98747 0.97210 1.22345 0.97220 0.99259 0.97211 1.22159 0.98428 1.01467 0.93050 0.91765 0.91687 0.86427 0.87875 0.88408 0.74122 0.89759 0.88761 0.76473 0.91440 0.90069 0.91786 0.92149 0.92003 0.91641 0.90872 0.90952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -21.79 11.32 55.50 0.63 -21.16 16 2 C 0.04 1.07 4.94 -17.47 -0.09 0.98 16 3 Si 0.91 18.54 29.61 -169.99 -5.03 13.51 16 4 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 5 H -0.28 -5.72 7.11 56.52 0.40 -5.31 16 6 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 7 C -0.35 -8.25 8.69 -14.93 -0.13 -8.38 16 8 H 0.09 2.11 6.99 -52.49 -0.37 1.74 16 9 N -0.43 -10.16 2.55 -114.81 -0.29 -10.45 16 10 C 0.12 2.85 4.23 -4.04 -0.02 2.83 16 11 C -0.12 -2.38 6.12 -27.88 -0.17 -2.55 16 12 C 0.48 8.74 8.33 36.00 0.30 9.04 16 13 O -0.51 -10.87 16.74 -18.75 -0.31 -11.18 16 14 O -0.52 -7.40 13.42 -39.25 -0.53 -7.92 16 15 C 0.47 10.43 7.08 -10.98 -0.08 10.35 16 16 O -0.61 -13.98 12.14 -9.16 -0.11 -14.09 16 17 C -0.14 -2.73 3.29 -27.88 -0.09 -2.82 16 18 C 0.15 2.56 0.98 -89.50 -0.09 2.48 16 19 O -0.57 -10.47 12.89 -49.94 -0.64 -11.11 16 20 C -0.13 -2.29 4.65 -25.03 -0.12 -2.40 16 21 C -0.13 -1.78 6.91 -24.70 -0.17 -1.95 16 22 C -0.12 -1.58 6.83 -25.07 -0.17 -1.76 16 23 C -0.11 -1.65 6.27 -25.61 -0.16 -1.81 16 24 H 0.27 6.61 8.31 -40.82 -0.34 6.27 16 25 H 0.06 1.61 7.49 -51.93 -0.39 1.22 16 26 H 0.12 2.99 5.30 -51.93 -0.28 2.72 16 27 H 0.10 1.89 8.14 -51.93 -0.42 1.46 16 28 H 0.10 1.82 8.14 -51.92 -0.42 1.39 16 29 H 0.40 3.72 9.10 45.56 0.41 4.14 16 30 H 0.08 1.55 7.65 -51.93 -0.40 1.16 16 31 H 0.09 1.79 8.10 -51.93 -0.42 1.37 16 32 H 0.38 7.14 6.96 45.56 0.32 7.45 16 33 H 0.07 1.25 7.79 -51.93 -0.40 0.84 16 34 H 0.08 1.53 7.17 -51.93 -0.37 1.15 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.69 8.14 -51.92 -0.42 0.27 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.07 1.05 7.95 -51.93 -0.41 0.64 16 40 H 0.07 0.98 7.67 -51.93 -0.40 0.58 16 LS Contribution 327.64 15.07 4.94 4.94 Total: -1.00 -28.66 327.64 -6.71 -35.37 By element: Atomic # 1 Polarization: 22.48 SS G_CDS: -4.38 Total: 18.10 kcal Atomic # 6 Polarization: 4.99 SS G_CDS: -0.98 Total: 4.01 kcal Atomic # 7 Polarization: -31.95 SS G_CDS: 0.34 Total: -31.61 kcal Atomic # 8 Polarization: -42.71 SS G_CDS: -1.60 Total: -44.31 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.03 Total: 13.51 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -28.66 -6.71 -35.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608185219.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.389 kcal (2) G-P(sol) polarization free energy of solvation -28.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds