Wall clock time and date at job start Tue Mar 31 2020 05:26:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86800 * 120.00023 * 2 1 4 4 H 1.48501 * 109.46987 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47471 * 300.00169 * 3 2 1 6 6 H 1.48499 * 109.46999 * 60.00557 * 3 2 1 7 7 C 1.38945 * 119.99897 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00086 * 201.75244 * 7 2 1 9 9 N 1.37104 * 120.00041 * 22.02663 * 7 2 1 10 10 C 1.46498 * 119.99919 * 34.31291 * 9 7 2 11 11 C 1.52999 * 109.46951 * 93.46067 * 10 9 7 12 12 C 1.50698 * 109.47298 * 179.97438 * 11 10 9 13 13 O 1.20821 * 119.99973 * 0.02562 * 12 11 10 14 14 O 1.34228 * 120.00309 * 179.97438 * 12 11 10 15 15 C 1.34775 * 120.00136 * 214.32234 * 9 7 2 16 16 O 1.21287 * 120.00253 * 180.02562 * 15 9 7 17 17 C 1.50705 * 120.00004 * 359.97438 * 15 9 7 18 18 C 1.52998 * 109.47233 * 180.02562 * 17 15 9 19 19 O 1.42900 * 110.01373 * 64.30267 * 18 17 15 20 20 C 1.54269 * 110.03098 * 302.91254 * 18 17 15 21 21 C 1.54967 * 104.15642 * 217.13989 * 20 18 17 22 22 C 1.54887 * 102.77984 * 37.88650 * 21 20 18 23 23 C 1.53878 * 110.03174 * 185.69321 * 18 17 15 24 24 H 0.97009 * 119.99708 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47266 * 213.45857 * 10 9 7 26 26 H 1.08996 * 109.47203 * 333.46476 * 10 9 7 27 27 H 1.09001 * 109.47453 * 300.00095 * 11 10 9 28 28 H 1.09008 * 109.47035 * 59.99831 * 11 10 9 29 29 H 0.96693 * 117.00372 * 179.97438 * 14 12 11 30 30 H 1.09003 * 109.47271 * 300.00904 * 17 15 9 31 31 H 1.09001 * 109.46594 * 60.00244 * 17 15 9 32 32 H 0.96696 * 113.99755 * 300.69480 * 19 18 17 33 33 H 1.09000 * 110.48438 * 335.77937 * 20 18 17 34 34 H 1.08993 * 110.49067 * 98.42672 * 20 18 17 35 35 H 1.09001 * 110.71682 * 279.57275 * 21 20 18 36 36 H 1.09005 * 110.76325 * 156.22541 * 21 20 18 37 37 H 1.09010 * 110.48411 * 203.41012 * 22 21 20 38 38 H 1.08995 * 110.48605 * 80.76548 * 22 21 20 39 39 H 1.08996 * 110.03345 * 238.56900 * 23 18 17 40 40 H 1.09004 * 110.03053 * 0.02562 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8894 2.3965 -1.2124 6 1 1.8895 2.3964 1.2126 7 6 2.0088 -1.2033 -0.0005 8 1 3.0311 -1.2368 0.3461 9 7 1.3983 -2.3471 -0.4464 10 6 0.4301 -2.2806 -1.5437 11 6 1.1450 -2.5409 -2.8711 12 6 0.1490 -2.4731 -4.0000 13 8 -1.0134 -2.2401 -3.7668 14 8 0.5532 -2.6706 -5.2646 15 6 1.6888 -3.5327 0.1251 16 8 1.1491 -4.5446 -0.2696 17 6 2.6852 -3.6012 1.2537 18 6 2.8313 -5.0517 1.7177 19 8 3.3829 -5.8481 0.6672 20 6 1.4575 -5.6123 2.1402 21 6 1.7750 -6.5141 3.3599 22 6 2.8804 -5.7175 4.0964 23 6 3.7359 -5.1190 2.9607 24 1 -0.4850 0.8401 0.0004 25 1 -0.3422 -3.0349 -1.3931 26 1 -0.0273 -1.2915 -1.5653 27 1 1.9174 -1.7866 -3.0218 28 1 1.6025 -3.5301 -2.8496 29 1 -0.1220 -2.6176 -5.9547 30 1 3.6508 -3.2313 0.9089 31 1 2.3363 -2.9871 2.0840 32 1 2.8521 -5.8551 -0.1410 33 1 0.7875 -4.8025 2.4290 34 1 1.0209 -6.2005 1.3332 35 1 2.1497 -7.4846 3.0347 36 1 0.8956 -6.6308 3.9934 37 1 3.4813 -6.3830 4.7164 38 1 2.4406 -4.9247 4.7013 39 1 4.5951 -5.7597 2.7630 40 1 4.0704 -4.1180 3.2336 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608185219.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:09 Heat of formation + Delta-G solvation = -212.574498 kcal Electronic energy + Delta-G solvation = -23769.572190 eV Core-core repulsion = 20161.823824 eV Total energy + Delta-G solvation = -3607.748367 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.42634 -40.97872 -39.26485 -37.21713 -36.75438 -35.57733 -33.82823 -32.82105 -31.12489 -29.60267 -27.13520 -26.93350 -24.94988 -22.11930 -21.79361 -21.05468 -20.61183 -19.29967 -18.61434 -17.86844 -17.57815 -17.23606 -16.99525 -16.59222 -16.44627 -15.92404 -15.77106 -15.49659 -14.47733 -14.37783 -14.36851 -14.17132 -13.81439 -13.50918 -13.26698 -13.06374 -12.89173 -12.69361 -12.61068 -12.57385 -12.22459 -12.06972 -11.96766 -11.94341 -11.84586 -11.67428 -11.50163 -11.39937 -11.03775 -10.67276 -10.27532 -9.56219 -8.32039 -6.07855 1.17536 1.40794 1.50006 1.61732 1.92590 2.06751 2.35333 3.01589 3.05880 3.38012 3.74525 3.81758 3.99209 4.02064 4.11617 4.34837 4.38047 4.49891 4.51547 4.61081 4.71985 4.74447 4.84406 4.95124 4.97967 5.00395 5.08505 5.14018 5.21470 5.27454 5.35775 5.48679 5.50342 5.52966 5.58990 5.95016 6.37923 6.84413 6.98749 7.11216 7.54864 7.97778 8.69633 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.013594 B = 0.006096 C = 0.004656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.174915 B = 4592.305166 C = 6012.545996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.003 3.997 3 Si 0.978 3.022 4 H -0.251 1.251 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.355 4.355 8 H 0.106 0.894 9 N -0.447 5.447 10 C 0.129 3.871 11 C -0.116 4.116 12 C 0.494 3.506 13 O -0.550 6.550 14 O -0.507 6.507 15 C 0.462 3.538 16 O -0.621 6.621 17 C -0.136 4.136 18 C 0.144 3.856 19 O -0.573 6.573 20 C -0.134 4.134 21 C -0.121 4.121 22 C -0.117 4.117 23 C -0.111 4.111 24 H 0.271 0.729 25 H 0.035 0.965 26 H 0.095 0.905 27 H 0.115 0.885 28 H 0.104 0.896 29 H 0.427 0.573 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.380 0.620 33 H 0.047 0.953 34 H 0.057 0.943 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.087 0.913 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.616 -4.578 0.797 8.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.201 4.201 3 Si 0.802 3.198 4 H -0.174 1.174 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.483 4.483 8 H 0.124 0.876 9 N -0.165 5.165 10 C 0.004 3.996 11 C -0.154 4.154 12 C 0.338 3.662 13 O -0.441 6.441 14 O -0.321 6.321 15 C 0.253 3.747 16 O -0.509 6.509 17 C -0.176 4.176 18 C 0.103 3.897 19 O -0.382 6.382 20 C -0.172 4.172 21 C -0.159 4.159 22 C -0.154 4.154 23 C -0.149 4.149 24 H 0.081 0.919 25 H 0.053 0.947 26 H 0.113 0.887 27 H 0.133 0.867 28 H 0.123 0.877 29 H 0.288 0.712 30 H 0.111 0.889 31 H 0.112 0.888 32 H 0.230 0.770 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.105 0.895 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.641 -4.967 1.398 8.410 hybrid contribution -1.209 1.222 -1.160 2.074 sum 5.432 -3.745 0.239 6.602 Atomic orbital electron populations 1.70056 1.07965 1.28698 1.45896 1.26205 0.95548 1.03061 0.95277 0.85100 0.79558 0.77542 0.77592 1.17408 1.20758 1.20798 1.19827 0.97615 0.85371 1.45450 0.87638 1.43663 1.38072 1.06461 1.28279 1.20965 0.90883 1.03421 0.84304 1.21614 0.97738 1.05700 0.90394 1.23407 0.88090 0.70785 0.83944 1.90704 1.21700 1.46424 1.85291 1.84503 1.47109 1.83304 1.17147 1.21074 0.85394 0.83471 0.84749 1.90449 1.57529 1.35546 1.67420 1.22183 0.99032 0.98734 0.97613 1.21705 0.92946 0.87167 0.87857 1.86310 1.53731 1.71626 1.26558 1.22885 0.96692 0.99079 0.98532 1.22524 0.99113 0.98308 0.95948 1.22359 0.96655 0.99657 0.96767 1.22196 0.98164 1.02571 0.91944 0.91922 0.94691 0.88746 0.86655 0.87746 0.71186 0.88918 0.88845 0.76954 0.93430 0.92454 0.91388 0.90837 0.89455 0.90887 0.90384 0.89751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -46.70 11.32 21.66 0.25 -46.45 16 2 C 0.00 0.12 4.94 84.93 0.42 0.54 16 3 Si 0.98 37.57 29.61 68.60 2.03 39.60 16 4 H -0.25 -8.94 7.11 99.48 0.71 -8.23 16 5 H -0.28 -10.90 7.11 99.48 0.71 -10.19 16 6 H -0.28 -10.87 7.11 99.48 0.71 -10.16 16 7 C -0.36 -16.75 8.69 84.04 0.73 -16.02 16 8 H 0.11 4.62 6.99 -2.91 -0.02 4.60 16 9 N -0.45 -21.28 2.55 -635.55 -1.62 -22.90 16 10 C 0.13 6.15 4.23 86.38 0.37 6.52 16 11 C -0.12 -4.43 6.12 29.85 0.18 -4.25 16 12 C 0.49 17.67 8.33 71.24 0.59 18.26 16 13 O -0.55 -23.62 16.74 21.98 0.37 -23.25 16 14 O -0.51 -13.23 13.42 -51.39 -0.69 -13.92 16 15 C 0.46 20.79 7.08 87.66 0.62 21.42 16 16 O -0.62 -29.46 12.14 11.01 0.13 -29.32 16 17 C -0.14 -5.08 3.29 29.85 0.10 -4.98 16 18 C 0.14 4.86 0.98 -10.07 -0.01 4.85 16 19 O -0.57 -20.70 12.89 -134.92 -1.74 -22.44 16 20 C -0.13 -4.62 4.65 31.70 0.15 -4.47 16 21 C -0.12 -3.20 6.91 31.91 0.22 -2.98 16 22 C -0.12 -2.67 6.83 31.67 0.22 -2.45 16 23 C -0.11 -2.96 6.27 31.32 0.20 -2.76 16 24 H 0.27 13.53 8.31 -92.70 -0.77 12.76 16 25 H 0.03 1.83 7.49 -2.39 -0.02 1.81 16 26 H 0.09 5.00 5.30 -2.39 -0.01 4.99 16 27 H 0.12 4.13 8.14 -2.39 -0.02 4.11 16 28 H 0.10 3.85 8.14 -2.38 -0.02 3.83 16 29 H 0.43 6.83 9.10 -74.06 -0.67 6.15 16 30 H 0.09 3.29 7.65 -2.39 -0.02 3.27 16 31 H 0.09 3.51 8.10 -2.39 -0.02 3.49 16 32 H 0.38 14.24 6.96 -74.06 -0.52 13.73 16 33 H 0.05 1.79 7.79 -2.39 -0.02 1.77 16 34 H 0.06 2.22 7.17 -2.39 -0.02 2.20 16 35 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 37 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 38 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.08 2.02 7.95 -2.39 -0.02 2.00 16 40 H 0.08 2.04 7.67 -2.38 -0.02 2.02 16 Total: -1.00 -62.66 327.64 2.39 -60.27 By element: Atomic # 1 Polarization: 44.85 SS G_CDS: -0.12 Total: 44.73 kcal Atomic # 6 Polarization: 9.89 SS G_CDS: 3.78 Total: 13.67 kcal Atomic # 7 Polarization: -67.97 SS G_CDS: -1.37 Total: -69.35 kcal Atomic # 8 Polarization: -87.00 SS G_CDS: -1.93 Total: -88.93 kcal Atomic # 14 Polarization: 37.57 SS G_CDS: 2.03 Total: 39.60 kcal Total: -62.66 2.39 -60.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608185219.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.306 kcal (2) G-P(sol) polarization free energy of solvation -62.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds