Wall clock time and date at job start Tue Mar 31 2020 05:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31466 * 1 3 3 Si 1.86797 * 119.99512 * 2 1 4 4 H 1.48500 * 109.47181 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47514 * 300.00120 * 3 2 1 6 6 H 1.48507 * 109.47205 * 60.00499 * 3 2 1 7 7 C 1.38879 * 120.00535 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00513 * 157.46423 * 7 2 1 9 9 N 1.37194 * 119.99758 * 337.47210 * 7 2 1 10 10 C 1.46499 * 120.00158 * 326.39042 * 9 7 2 11 11 C 1.52996 * 109.47488 * 264.54881 * 10 9 7 12 12 C 1.50701 * 109.47215 * 179.97438 * 11 10 9 13 13 O 1.20823 * 120.00268 * 359.97438 * 12 11 10 14 14 O 1.34234 * 119.99665 * 179.97438 * 12 11 10 15 15 C 1.34774 * 120.00293 * 146.39938 * 9 7 2 16 16 O 1.21506 * 120.00497 * 179.97438 * 15 9 7 17 17 O 1.34668 * 120.00136 * 359.97438 * 15 9 7 18 18 C 1.45200 * 117.00250 * 180.02562 * 17 15 9 19 19 C 1.53002 * 109.46700 * 89.99990 * 18 17 15 20 20 C 1.53001 * 109.46555 * 179.97438 * 19 18 17 21 21 C 1.52996 * 109.47450 * 300.00095 * 20 19 18 22 22 C 1.52998 * 109.47148 * 59.99874 * 21 20 19 23 23 C 1.52998 * 109.47365 * 300.00206 * 22 21 20 24 24 H 0.96998 * 120.00258 * 359.97438 * 1 2 3 25 25 H 1.09006 * 109.47245 * 24.54562 * 10 9 7 26 26 H 1.08994 * 109.47504 * 144.54215 * 10 9 7 27 27 H 1.09003 * 109.47082 * 299.99847 * 11 10 9 28 28 H 1.08996 * 109.47676 * 59.99570 * 11 10 9 29 29 H 0.96699 * 116.99583 * 179.97438 * 14 12 11 30 30 H 1.08996 * 109.46673 * 330.00174 * 18 17 15 31 31 H 1.08999 * 109.47339 * 299.99880 * 19 18 17 32 32 H 1.08992 * 109.47487 * 59.99884 * 19 18 17 33 33 H 1.09000 * 109.46945 * 179.97438 * 20 19 18 34 34 H 1.09004 * 109.46873 * 60.00485 * 20 19 18 35 35 H 1.09006 * 109.46896 * 299.99942 * 21 20 19 36 36 H 1.08995 * 109.47146 * 180.02562 * 21 20 19 37 37 H 1.08999 * 109.47168 * 180.02562 * 22 21 20 38 38 H 1.09000 * 109.46892 * 60.00582 * 22 21 20 39 39 H 1.09006 * 109.47000 * 300.00129 * 23 22 21 40 40 H 1.09000 * 109.47263 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3147 0.0000 0.0000 3 14 2.2485 1.6178 0.0000 4 1 3.7085 1.3466 0.0006 5 1 1.8897 2.3966 -1.2125 6 1 1.8898 2.3965 1.2126 7 6 2.0092 -1.2027 -0.0005 8 1 3.0273 -1.2382 -0.3590 9 7 1.4018 -2.3457 0.4542 10 6 0.4303 -2.2734 1.5483 11 6 1.1333 -2.5678 2.8749 12 6 0.1340 -2.4928 4.0005 13 8 -1.0217 -2.2304 3.7658 14 8 0.5281 -2.7177 5.2639 15 6 1.6989 -3.5352 -0.1056 16 8 1.1613 -4.5476 0.2974 17 8 2.5917 -3.6017 -1.1116 18 6 2.8624 -4.9157 -1.6669 19 6 1.8935 -5.1922 -2.8183 20 6 2.1793 -6.5766 -3.4038 21 6 3.6171 -6.6232 -3.9247 22 6 4.5859 -6.3466 -2.7734 23 6 4.3002 -4.9622 -2.1878 24 1 -0.4850 0.8400 0.0004 25 1 -0.0055 -1.2748 1.5820 26 1 -0.3577 -3.0083 1.3838 27 1 1.5691 -3.5664 2.8414 28 1 1.9213 -1.8330 3.0396 29 1 -0.1487 -2.6580 5.9520 30 1 2.7315 -5.6714 -0.8924 31 1 0.8692 -5.1586 -2.4472 32 1 2.0243 -4.4365 -3.5927 33 1 1.4888 -6.7739 -4.2238 34 1 2.0487 -7.3326 -2.6295 35 1 3.7476 -5.8672 -4.6991 36 1 3.8205 -7.6093 -4.3422 37 1 5.6102 -6.3793 -3.1446 38 1 4.4554 -7.1026 -1.9991 39 1 4.4308 -4.2062 -2.9622 40 1 4.9902 -4.7653 -1.3673 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608185341.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:23 Heat of formation + Delta-G solvation = -210.517028 kcal Electronic energy + Delta-G solvation = -23421.905979 eV Core-core repulsion = 19814.246831 eV Total energy + Delta-G solvation = -3607.659148 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.52510 -41.11040 -39.32468 -37.55441 -37.03535 -36.41311 -33.86217 -32.43903 -31.74714 -30.69774 -27.16392 -26.03334 -23.66701 -23.41245 -22.20753 -21.38169 -20.81603 -20.05400 -19.14859 -18.08300 -17.63905 -17.62552 -17.03998 -16.78099 -16.31530 -16.13378 -15.25583 -15.13382 -15.11509 -14.58260 -14.47105 -14.12331 -13.85970 -13.66323 -13.53108 -13.17543 -13.10916 -12.85583 -12.63536 -12.56731 -12.21932 -12.08414 -12.05381 -11.97631 -11.75232 -11.70305 -11.57684 -11.37809 -11.32538 -10.92389 -10.78761 -9.68350 -8.34457 -6.09991 1.17407 1.40651 1.46957 1.57925 1.66654 1.99310 2.27734 2.38871 3.02732 3.61084 3.74854 3.76237 3.93965 4.03657 4.09101 4.25428 4.26377 4.34948 4.48014 4.51200 4.53864 4.66056 4.68851 4.84887 4.92371 5.04254 5.08548 5.18835 5.21759 5.29321 5.29619 5.35809 5.46012 5.50954 5.57507 5.69559 5.96312 6.36528 6.99370 7.06974 7.40634 7.96757 8.70138 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.014005 B = 0.005412 C = 0.004310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.797074 B = 5172.356557 C = 6495.535235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C -0.001 4.001 3 Si 0.988 3.012 4 H -0.255 1.255 5 H -0.281 1.281 6 H -0.273 1.273 7 C -0.350 4.350 8 H 0.096 0.904 9 N -0.437 5.437 10 C 0.150 3.850 11 C -0.121 4.121 12 C 0.498 3.502 13 O -0.548 6.548 14 O -0.505 6.505 15 C 0.600 3.400 16 O -0.646 6.646 17 O -0.365 6.365 18 C 0.097 3.903 19 C -0.132 4.132 20 C -0.109 4.109 21 C -0.118 4.118 22 C -0.109 4.109 23 C -0.109 4.109 24 H 0.273 0.727 25 H 0.106 0.894 26 H 0.038 0.962 27 H 0.102 0.898 28 H 0.120 0.880 29 H 0.428 0.572 30 H 0.062 0.938 31 H 0.033 0.967 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.061 0.939 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.555 -7.480 -0.717 11.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.203 4.203 3 Si 0.811 3.189 4 H -0.179 1.179 5 H -0.207 1.207 6 H -0.198 1.198 7 C -0.477 4.477 8 H 0.114 0.886 9 N -0.163 5.163 10 C 0.027 3.973 11 C -0.159 4.159 12 C 0.341 3.659 13 O -0.439 6.439 14 O -0.319 6.319 15 C 0.356 3.644 16 O -0.544 6.544 17 O -0.279 6.279 18 C 0.041 3.959 19 C -0.170 4.170 20 C -0.147 4.147 21 C -0.155 4.155 22 C -0.146 4.146 23 C -0.147 4.147 24 H 0.083 0.917 25 H 0.123 0.877 26 H 0.056 0.944 27 H 0.121 0.879 28 H 0.138 0.862 29 H 0.290 0.710 30 H 0.081 0.919 31 H 0.052 0.948 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.080 0.920 35 H 0.087 0.913 36 H 0.107 0.893 37 H 0.112 0.888 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.275 -7.619 -1.016 11.294 hybrid contribution -0.884 0.848 0.562 1.348 sum 7.390 -6.771 -0.454 10.034 Atomic orbital electron populations 1.70086 1.07818 1.28898 1.46406 1.26265 0.95759 1.03125 0.95190 0.84964 0.79170 0.76846 0.77933 1.17857 1.20653 1.19798 1.19773 0.97603 0.85027 1.45305 0.88600 1.42570 1.40354 1.03515 1.29898 1.21001 0.89261 1.04155 0.82893 1.21645 0.98070 1.05785 0.90439 1.23201 0.87816 0.71006 0.83833 1.90710 1.21937 1.46095 1.85116 1.84498 1.47436 1.82741 1.17232 1.18650 0.80821 0.85139 0.79836 1.90757 1.58931 1.35978 1.68735 1.86359 1.58197 1.35532 1.47795 1.22826 0.97132 0.81382 0.94576 1.21910 0.97803 0.99793 0.97511 1.21487 0.98568 0.94063 1.00571 1.21593 0.93000 1.03108 0.97789 1.21519 1.00743 0.94213 0.98158 1.21636 0.91976 0.99949 1.01155 0.91693 0.87655 0.94356 0.87944 0.86153 0.71035 0.91948 0.94767 0.91452 0.90325 0.91999 0.91307 0.89345 0.88781 0.91584 0.90837 0.91347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -49.21 11.34 21.65 0.25 -48.96 16 2 C 0.00 -0.05 4.92 84.90 0.42 0.37 16 3 Si 0.99 39.95 29.61 68.60 2.03 41.98 16 4 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 5 H -0.28 -11.29 7.11 99.48 0.71 -10.59 16 6 H -0.27 -10.69 7.11 99.48 0.71 -9.99 16 7 C -0.35 -18.51 8.99 84.01 0.76 -17.75 16 8 H 0.10 4.98 7.67 -2.91 -0.02 4.96 16 9 N -0.44 -23.20 2.56 -764.69 -1.96 -25.16 16 10 C 0.15 7.54 4.19 86.38 0.36 7.90 16 11 C -0.12 -4.81 6.10 29.85 0.18 -4.62 16 12 C 0.50 18.00 8.33 71.24 0.59 18.60 16 13 O -0.55 -23.55 16.74 21.97 0.37 -23.18 16 14 O -0.51 -13.21 13.42 -51.46 -0.69 -13.90 16 15 C 0.60 31.53 8.28 129.79 1.08 32.60 16 16 O -0.65 -35.31 15.27 19.82 0.30 -35.01 16 17 O -0.36 -17.25 8.96 -55.78 -0.50 -17.75 16 18 C 0.10 3.57 2.46 30.59 0.08 3.64 16 19 C -0.13 -4.47 5.56 30.60 0.17 -4.30 16 20 C -0.11 -2.63 5.92 30.59 0.18 -2.45 16 21 C -0.12 -2.19 5.92 30.59 0.18 -2.00 16 22 C -0.11 -2.14 5.92 30.59 0.18 -1.96 16 23 C -0.11 -3.01 5.58 30.59 0.17 -2.84 16 24 H 0.27 14.09 8.31 -92.71 -0.77 13.32 16 25 H 0.11 5.72 5.30 -2.38 -0.01 5.71 16 26 H 0.04 2.07 7.55 -2.39 -0.02 2.06 16 27 H 0.10 4.01 8.14 -2.39 -0.02 4.00 16 28 H 0.12 4.43 8.14 -2.39 -0.02 4.41 16 29 H 0.43 6.76 9.10 -74.06 -0.67 6.09 16 30 H 0.06 2.47 7.16 -2.39 -0.02 2.45 16 31 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 33 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 35 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 36 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 40 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -70.36 334.19 4.51 -65.84 By element: Atomic # 1 Polarization: 28.58 SS G_CDS: 0.37 Total: 28.96 kcal Atomic # 6 Polarization: 22.84 SS G_CDS: 4.34 Total: 27.19 kcal Atomic # 7 Polarization: -72.40 SS G_CDS: -1.71 Total: -74.12 kcal Atomic # 8 Polarization: -89.33 SS G_CDS: -0.52 Total: -89.85 kcal Atomic # 14 Polarization: 39.95 SS G_CDS: 2.03 Total: 41.98 kcal Total: -70.36 4.51 -65.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608185341.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.674 kcal (2) G-P(sol) polarization free energy of solvation -70.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -215.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -210.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds