Wall clock time and date at job start Tue Mar 31 2020 05:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86808 * 120.00169 * 2 1 4 4 H 1.48496 * 109.47316 * 240.00362 * 3 2 1 5 5 H 1.48505 * 109.46851 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46879 * 119.99943 * 3 2 1 7 7 C 1.37877 * 120.00014 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99762 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00004 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46882 * 179.97438 * 9 7 2 11 11 N 1.46904 * 109.46887 * 179.97438 * 10 9 7 12 12 C 1.48051 * 111.00156 * 290.12772 * 11 10 9 13 13 C 1.51200 * 105.67155 * 213.08040 * 12 11 10 14 14 C 1.38295 * 131.70631 * 197.46731 * 13 12 11 15 15 C 1.38289 * 120.28259 * 180.02562 * 14 13 12 16 16 C 1.38054 * 120.13231 * 359.66562 * 15 14 13 17 17 C 1.39300 * 119.86615 * 0.63150 * 16 15 14 18 18 C 1.48457 * 120.10620 * 179.66909 * 17 16 15 19 19 N 1.34051 * 126.67253 * 179.41095 * 18 17 16 20 20 N 1.28991 * 107.26519 * 180.26316 * 19 18 17 21 21 N 1.28727 * 108.94656 * 0.02562 * 20 19 18 22 22 H 0.96996 * 125.34515 * 180.02562 * 21 20 19 23 23 N 1.28874 * 109.31728 * 359.97438 * 21 20 19 24 24 C 1.38235 * 108.25787 * 17.50482 * 13 12 11 25 25 C 1.48060 * 110.99982 * 175.15763 * 11 10 9 26 26 H 0.96999 * 119.99851 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.47023 * 59.99724 * 9 7 2 28 28 H 1.08999 * 109.46829 * 299.99681 * 9 7 2 29 29 H 1.08996 * 109.47439 * 60.00074 * 10 9 7 30 30 H 1.08999 * 109.47205 * 299.99545 * 10 9 7 31 31 H 1.08997 * 110.21052 * 94.02824 * 12 11 10 32 32 H 1.09001 * 110.27299 * 332.16465 * 12 11 10 33 33 H 1.08005 * 119.85771 * 0.06531 * 14 13 12 34 34 H 1.07996 * 119.93364 * 179.97438 * 15 14 13 35 35 H 1.07999 * 120.07243 * 180.32929 * 16 15 14 36 36 H 1.08998 * 110.20891 * 27.86132 * 25 11 10 37 37 H 1.08989 * 110.21270 * 265.95506 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5108 -4.9342 0.0012 12 6 0.8340 -5.1556 1.2992 13 6 0.8543 -6.6511 1.5206 14 6 0.1232 -7.4662 2.3655 15 6 0.3390 -8.8321 2.3759 16 6 1.2819 -9.3912 1.5368 17 6 2.0259 -8.5751 0.6878 18 6 3.0464 -9.1699 -0.2115 19 7 3.8244 -8.5140 -1.0841 20 7 4.5660 -9.3915 -1.6706 21 7 4.2836 -10.5571 -1.2030 22 1 4.7012 -11.3882 -1.4779 23 7 3.3595 -10.4464 -0.3116 24 6 1.8058 -7.2003 0.6816 25 6 2.4382 -6.0824 -0.1155 26 1 -0.4850 0.8401 0.0004 27 1 0.6247 -2.5571 -0.8896 28 1 0.6241 -2.5567 0.8903 29 1 2.8719 -3.6043 0.8905 30 1 2.8719 -3.6043 -0.8895 31 1 -0.1938 -4.7955 1.2542 32 1 1.3752 -4.6493 2.0985 33 1 -0.6198 -7.0341 3.0195 34 1 -0.2348 -9.4633 3.0383 35 1 1.4458 -10.4587 1.5420 36 1 3.4110 -5.8248 0.3034 37 1 2.5432 -6.3772 -1.1595 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609495088.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:29 Heat of formation + Delta-G solvation = 160.210085 kcal Electronic energy + Delta-G solvation = -21256.842566 eV Core-core repulsion = 18037.153774 eV Total energy + Delta-G solvation = -3219.688792 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -44.58119 -40.29498 -37.01077 -34.58090 -33.76980 -33.32751 -31.49845 -30.94272 -28.75939 -27.40881 -25.33219 -24.66959 -24.15670 -22.42955 -21.20141 -20.84857 -19.93805 -19.23858 -17.27882 -16.55166 -16.26415 -15.72689 -15.42475 -15.01098 -14.51327 -14.27055 -13.92230 -13.57424 -13.19932 -12.88704 -12.53990 -12.44138 -12.30807 -11.88863 -11.84617 -11.48502 -11.31237 -11.14760 -11.09118 -11.00920 -10.96191 -10.82901 -10.52743 -9.88419 -9.37549 -9.13548 -8.81564 -8.69078 -8.30502 -7.78681 -5.96537 -3.99042 0.59907 1.08103 1.28918 2.07303 2.26474 3.36310 3.40488 3.43043 3.55299 3.69859 4.07605 4.38403 4.47205 4.58696 4.75451 4.95464 5.06579 5.30328 5.39424 5.39658 5.43758 5.57241 5.70824 5.84141 5.93899 6.09493 6.14461 6.18613 6.24871 6.33004 6.34971 6.44357 6.58662 6.80998 6.95453 7.32657 7.43958 7.76400 7.90742 8.01684 8.09947 8.45501 9.07898 9.64517 11.14812 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.023000 B = 0.003539 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.086584 B = 7910.809600 C = 8975.510133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.054 0.946 9 C 0.029 3.971 10 C 0.052 3.948 11 N -0.502 5.502 12 C 0.077 3.923 13 C -0.096 4.096 14 C -0.080 4.080 15 C -0.125 4.125 16 C -0.084 4.084 17 C -0.010 4.010 18 C 0.226 3.774 19 N -0.260 5.260 20 N -0.050 5.050 21 N -0.231 5.231 22 H 0.474 0.526 23 N -0.300 5.300 24 C -0.052 4.052 25 C 0.074 3.926 26 H 0.261 0.739 27 H 0.026 0.974 28 H 0.017 0.983 29 H 0.026 0.974 30 H 0.068 0.932 31 H 0.095 0.905 32 H 0.065 0.935 33 H 0.129 0.871 34 H 0.131 0.869 35 H 0.132 0.868 36 H 0.062 0.938 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.246 -23.592 3.040 24.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.562 4.562 8 H 0.072 0.928 9 C -0.008 4.008 10 C -0.075 4.075 11 N -0.226 5.226 12 C -0.051 4.051 13 C -0.096 4.096 14 C -0.099 4.099 15 C -0.143 4.143 16 C -0.104 4.104 17 C -0.014 4.014 18 C -0.053 4.053 19 N -0.133 5.133 20 N -0.046 5.046 21 N -0.077 5.077 22 H 0.328 0.672 23 N -0.152 5.152 24 C -0.055 4.055 25 C -0.053 4.053 26 H 0.071 0.929 27 H 0.045 0.955 28 H 0.035 0.965 29 H 0.044 0.956 30 H 0.086 0.914 31 H 0.113 0.887 32 H 0.083 0.917 33 H 0.147 0.853 34 H 0.149 0.851 35 H 0.150 0.850 36 H 0.080 0.920 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.212 -23.388 2.089 23.856 hybrid contribution 1.018 0.292 0.802 1.328 sum 5.230 -23.096 2.890 23.857 Atomic orbital electron populations 1.69960 1.06012 1.26676 1.50569 1.24983 0.94825 0.99140 0.95298 0.86660 0.79575 0.83159 0.78606 1.20201 1.21304 1.20311 1.21154 0.92981 0.91028 1.51018 0.92780 1.19052 0.93885 0.89914 0.97963 1.22636 0.96970 0.88283 0.99635 1.65466 1.25388 1.02415 1.29321 1.21705 1.02063 0.89272 0.92062 1.20825 0.96001 0.96842 0.95952 1.20719 0.98484 0.92999 0.97744 1.20946 0.98818 0.94724 0.99780 1.21002 0.95149 0.99544 0.94742 1.16645 0.95943 0.91291 0.97524 1.23735 0.98437 0.85489 0.97684 1.76204 1.05694 1.23512 1.07904 1.78955 1.18643 0.88421 1.18562 1.47713 1.24626 1.11082 1.24252 0.67245 1.74891 1.07867 1.21031 1.11374 1.20661 0.96019 0.92337 0.96435 1.21755 0.94771 0.88191 1.00611 0.92948 0.95549 0.96499 0.95552 0.91398 0.88688 0.91669 0.85309 0.85070 0.84965 0.91975 0.88334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.93 13.29 55.43 0.74 -26.19 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 4 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.52 -14.87 9.11 -34.44 -0.31 -15.18 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.03 0.76 5.03 -27.88 -0.14 0.62 16 10 C 0.05 1.11 4.57 -3.82 -0.02 1.09 16 11 N -0.50 -9.59 5.48 -234.92 -1.29 -10.88 16 12 C 0.08 1.30 5.70 -4.10 -0.02 1.28 16 13 C -0.10 -1.40 6.26 -104.36 -0.65 -2.05 16 14 C -0.08 -0.93 10.03 -39.54 -0.40 -1.33 16 15 C -0.12 -1.25 10.03 -39.63 -0.40 -1.65 16 16 C -0.08 -0.92 9.70 -39.25 -0.38 -1.30 16 17 C -0.01 -0.14 5.87 -104.92 -0.62 -0.75 16 18 C 0.23 2.99 7.93 -156.30 -1.24 1.75 16 19 N -0.26 -3.69 10.82 32.16 0.35 -3.34 16 20 N -0.05 -0.59 13.47 60.35 0.81 0.22 16 21 N -0.23 -1.93 7.90 60.35 0.48 -1.45 16 22 H 0.47 1.48 8.96 -340.37 -3.05 -1.57 16 23 N -0.30 -3.24 12.08 32.17 0.39 -2.85 16 24 C -0.05 -0.78 6.12 -104.03 -0.64 -1.42 16 25 C 0.07 1.24 5.69 -4.11 -0.02 1.22 16 26 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 27 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.02 0.45 7.52 -51.93 -0.39 0.06 16 29 H 0.03 0.55 7.83 -51.93 -0.41 0.15 16 30 H 0.07 1.45 8.13 -51.93 -0.42 1.03 16 31 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 32 H 0.07 1.12 7.61 -51.93 -0.40 0.72 16 33 H 0.13 1.23 8.06 -52.48 -0.42 0.80 16 34 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 35 H 0.13 1.20 7.88 -52.49 -0.41 0.78 16 36 H 0.06 1.03 7.81 -51.93 -0.41 0.63 16 37 H 0.10 1.68 7.38 -51.94 -0.38 1.29 16 LS Contribution 316.98 15.07 4.78 4.78 Total: -1.00 -33.19 316.98 -10.80 -44.00 By element: Atomic # 1 Polarization: 2.21 SS G_CDS: -7.10 Total: -4.89 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: -4.94 Total: -16.12 kcal Atomic # 7 Polarization: -45.97 SS G_CDS: 1.48 Total: -44.49 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -33.19 -10.80 -44.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609495088.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 204.207 kcal (2) G-P(sol) polarization free energy of solvation -33.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 171.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 160.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds