Wall clock time and date at job start Tue Mar 31 2020 05:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86808 * 120.00169 * 2 1 4 4 H 1.48496 * 109.47316 * 240.00362 * 3 2 1 5 5 H 1.48505 * 109.46851 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46879 * 119.99943 * 3 2 1 7 7 C 1.37877 * 120.00014 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99762 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00004 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.46882 * 179.97438 * 9 7 2 11 11 N 1.46904 * 109.46887 * 179.97438 * 10 9 7 12 12 C 1.48051 * 111.00156 * 290.12772 * 11 10 9 13 13 C 1.51200 * 105.67155 * 213.08040 * 12 11 10 14 14 C 1.38295 * 131.70631 * 197.46731 * 13 12 11 15 15 C 1.38289 * 120.28259 * 180.02562 * 14 13 12 16 16 C 1.38054 * 120.13231 * 359.66562 * 15 14 13 17 17 C 1.39300 * 119.86615 * 0.63150 * 16 15 14 18 18 C 1.48457 * 120.10620 * 179.66909 * 17 16 15 19 19 N 1.34051 * 126.67253 * 179.41095 * 18 17 16 20 20 N 1.28991 * 107.26519 * 180.26316 * 19 18 17 21 21 N 1.28727 * 108.94656 * 0.02562 * 20 19 18 22 22 H 0.96996 * 125.34515 * 180.02562 * 21 20 19 23 23 N 1.28874 * 109.31728 * 359.97438 * 21 20 19 24 24 C 1.38235 * 108.25787 * 17.50482 * 13 12 11 25 25 C 1.48060 * 110.99982 * 175.15763 * 11 10 9 26 26 H 0.96999 * 119.99851 * 359.97438 * 1 2 3 27 27 H 1.08996 * 109.47023 * 59.99724 * 9 7 2 28 28 H 1.08999 * 109.46829 * 299.99681 * 9 7 2 29 29 H 1.08996 * 109.47439 * 60.00074 * 10 9 7 30 30 H 1.08999 * 109.47205 * 299.99545 * 10 9 7 31 31 H 1.08997 * 110.21052 * 94.02824 * 12 11 10 32 32 H 1.09001 * 110.27299 * 332.16465 * 12 11 10 33 33 H 1.08005 * 119.85771 * 0.06531 * 14 13 12 34 34 H 1.07996 * 119.93364 * 179.97438 * 15 14 13 35 35 H 1.07999 * 120.07243 * 180.32929 * 16 15 14 36 36 H 1.08998 * 110.20891 * 27.86132 * 25 11 10 37 37 H 1.08989 * 110.21270 * 265.95506 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5108 -4.9342 0.0012 12 6 0.8340 -5.1556 1.2992 13 6 0.8543 -6.6511 1.5206 14 6 0.1232 -7.4662 2.3655 15 6 0.3390 -8.8321 2.3759 16 6 1.2819 -9.3912 1.5368 17 6 2.0259 -8.5751 0.6878 18 6 3.0464 -9.1699 -0.2115 19 7 3.8244 -8.5140 -1.0841 20 7 4.5660 -9.3915 -1.6706 21 7 4.2836 -10.5571 -1.2030 22 1 4.7012 -11.3882 -1.4779 23 7 3.3595 -10.4464 -0.3116 24 6 1.8058 -7.2003 0.6816 25 6 2.4382 -6.0824 -0.1155 26 1 -0.4850 0.8401 0.0004 27 1 0.6247 -2.5571 -0.8896 28 1 0.6241 -2.5567 0.8903 29 1 2.8719 -3.6043 0.8905 30 1 2.8719 -3.6043 -0.8895 31 1 -0.1938 -4.7955 1.2542 32 1 1.3752 -4.6493 2.0985 33 1 -0.6198 -7.0341 3.0195 34 1 -0.2348 -9.4633 3.0383 35 1 1.4458 -10.4587 1.5420 36 1 3.4110 -5.8248 0.3034 37 1 2.5432 -6.3772 -1.1595 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609495088.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:28 Heat of formation + Delta-G solvation = 136.972550 kcal Electronic energy + Delta-G solvation = -21257.850221 eV Core-core repulsion = 18037.153774 eV Total energy + Delta-G solvation = -3220.696447 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -45.45930 -41.42668 -38.29578 -35.48164 -35.39996 -34.63005 -33.13521 -31.92015 -30.40924 -28.63590 -26.91237 -25.65240 -25.32191 -23.98025 -22.29238 -22.00754 -21.54016 -20.08881 -18.54080 -18.14958 -17.40314 -16.90282 -16.71348 -16.40364 -16.22239 -15.50739 -15.00139 -14.98039 -14.52902 -14.15095 -14.09609 -13.71471 -13.47206 -13.41292 -13.25355 -12.96130 -12.72056 -12.43668 -12.39631 -12.29634 -12.17375 -11.97446 -11.94726 -11.76244 -11.37483 -11.27589 -10.53621 -9.99407 -9.62663 -9.18046 -8.18186 -6.29687 -0.31310 0.18408 0.31728 1.31046 1.41713 1.43102 1.45188 1.52969 2.41855 2.64227 2.74485 3.06213 3.15092 3.17037 3.39371 3.58115 4.07563 4.17683 4.30083 4.32674 4.40421 4.44488 4.50787 4.56141 4.61433 4.72797 4.83563 4.91639 5.00998 5.04475 5.35533 5.43304 5.45519 5.50369 5.61381 5.63605 5.78038 5.90034 5.92779 6.06366 6.29266 6.86342 7.12331 7.39155 8.93838 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.023000 B = 0.003539 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.086584 B = 7910.809600 C = 8975.510133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.966 3.034 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.547 4.547 8 H 0.060 0.940 9 C 0.039 3.961 10 C 0.070 3.930 11 N -0.520 5.520 12 C 0.078 3.922 13 C -0.113 4.113 14 C -0.078 4.078 15 C -0.108 4.108 16 C -0.076 4.076 17 C -0.019 4.019 18 C 0.210 3.790 19 N -0.297 5.297 20 N -0.060 5.060 21 N -0.198 5.198 22 H 0.495 0.505 23 N -0.288 5.288 24 C -0.073 4.073 25 C 0.083 3.917 26 H 0.264 0.736 27 H -0.007 1.007 28 H -0.002 1.002 29 H 0.030 0.970 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.057 0.943 33 H 0.151 0.849 34 H 0.174 0.826 35 H 0.158 0.842 36 H 0.057 0.943 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.769 -25.701 4.130 26.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.790 3.210 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.585 4.585 8 H 0.078 0.922 9 C 0.002 3.998 10 C -0.058 4.058 11 N -0.244 5.244 12 C -0.050 4.050 13 C -0.113 4.113 14 C -0.097 4.097 15 C -0.125 4.125 16 C -0.096 4.096 17 C -0.023 4.023 18 C -0.070 4.070 19 N -0.169 5.169 20 N -0.055 5.055 21 N -0.049 5.049 22 H 0.354 0.646 23 N -0.141 5.141 24 C -0.076 4.076 25 C -0.044 4.044 26 H 0.073 0.927 27 H 0.011 0.989 28 H 0.016 0.984 29 H 0.048 0.952 30 H 0.084 0.916 31 H 0.101 0.899 32 H 0.075 0.925 33 H 0.169 0.831 34 H 0.191 0.809 35 H 0.175 0.825 36 H 0.075 0.925 37 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.759 -25.528 3.166 26.160 hybrid contribution 0.830 0.759 0.458 1.214 sum 5.589 -24.769 3.624 25.649 Atomic orbital electron populations 1.70100 1.07782 1.27866 1.51264 1.25949 0.95759 1.03256 0.94566 0.85488 0.78264 0.78020 0.79182 1.19257 1.20725 1.19099 1.21582 0.93541 0.92216 1.51179 0.92165 1.18856 0.94046 0.91580 0.95331 1.22250 0.95671 0.88217 0.99631 1.65306 1.25938 1.02155 1.30968 1.21590 1.00874 0.91739 0.90775 1.20672 0.97639 0.95190 0.97846 1.21047 0.98056 0.93648 0.96953 1.21408 0.97867 0.94160 0.99098 1.21369 0.94185 1.00512 0.93517 1.16832 0.96508 0.90722 0.98191 1.23799 0.98902 0.86154 0.98096 1.76189 1.06810 1.24855 1.09025 1.78893 1.18694 0.89085 1.18808 1.47785 1.23196 1.11392 1.22572 0.64601 1.74839 1.07969 1.19800 1.11466 1.20490 0.97034 0.92874 0.97235 1.21561 0.94184 0.88096 1.00570 0.92707 0.98878 0.98389 0.95219 0.91612 0.89910 0.92478 0.83127 0.80904 0.82450 0.92497 0.89248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.51 13.29 21.45 0.28 -57.23 16 2 C 0.00 0.17 5.46 84.66 0.46 0.63 16 3 Si 0.97 44.90 29.54 68.60 2.03 46.93 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 7 C -0.55 -31.92 9.11 25.60 0.23 -31.68 16 8 H 0.06 3.36 7.74 -2.91 -0.02 3.33 16 9 C 0.04 2.17 5.03 29.85 0.15 2.32 16 10 C 0.07 3.15 4.57 86.30 0.39 3.55 16 11 N -0.52 -20.96 5.48 -897.14 -4.91 -25.88 16 12 C 0.08 2.78 5.70 85.49 0.49 3.26 16 13 C -0.11 -3.29 6.26 -19.69 -0.12 -3.41 16 14 C -0.08 -1.64 10.03 22.30 0.22 -1.42 16 15 C -0.11 -1.73 10.03 22.24 0.22 -1.51 16 16 C -0.08 -1.41 9.70 22.48 0.22 -1.20 16 17 C -0.02 -0.48 5.87 -20.06 -0.12 -0.60 16 18 C 0.21 5.33 7.93 137.38 1.09 6.42 16 19 N -0.30 -8.39 10.82 -52.18 -0.56 -8.95 16 20 N -0.06 -1.34 13.47 37.02 0.50 -0.84 16 21 N -0.20 -2.90 7.90 37.02 0.29 -2.61 16 22 H 0.49 1.79 8.96 -347.54 -3.12 -1.33 16 23 N -0.29 -5.56 12.08 -52.13 -0.63 -6.19 16 24 C -0.07 -2.23 6.12 -19.48 -0.12 -2.35 16 25 C 0.08 2.91 5.69 85.48 0.49 3.39 16 26 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 27 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 28 H 0.00 -0.13 7.52 -2.39 -0.02 -0.15 16 29 H 0.03 1.30 7.83 -2.39 -0.02 1.28 16 30 H 0.07 2.94 8.13 -2.39 -0.02 2.92 16 31 H 0.08 3.06 8.14 -2.39 -0.02 3.04 16 32 H 0.06 2.07 7.61 -2.39 -0.02 2.06 16 33 H 0.15 2.46 8.06 -2.91 -0.02 2.43 16 34 H 0.17 1.39 8.06 -2.91 -0.02 1.37 16 35 H 0.16 2.14 7.88 -2.91 -0.02 2.12 16 36 H 0.06 1.99 7.81 -2.39 -0.02 1.97 16 37 H 0.09 3.22 7.38 -2.39 -0.02 3.20 16 Total: -1.00 -74.06 316.98 -1.40 -75.47 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: -2.01 Total: 1.88 kcal Atomic # 6 Polarization: -26.20 SS G_CDS: 3.61 Total: -22.59 kcal Atomic # 7 Polarization: -96.66 SS G_CDS: -5.03 Total: -101.69 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -74.06 -1.40 -75.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609495088.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 212.440 kcal (2) G-P(sol) polarization free energy of solvation -74.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds